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2005-08-15	amwaterhouse	Use default fileChooser for now	commit \| commitdiff \| tree
2005-08-15	amwaterhouse	super.setconsensus	commit \| commitdiff \| tree
2005-08-15	amwaterhouse	Percentage precalculated in aafrequency	commit \| commitdiff \| tree
2005-08-15	amwaterhouse	isGap slightly more efficient	commit \| commitdiff \| tree
2005-08-15	amwaterhouse	Add taylor to default colour check	commit \| commitdiff \| tree
2005-08-15	amwaterhouse	Hashtable now in array, not vector	commit \| commitdiff \| tree
2005-08-15	amwaterhouse	IgnoreGapsConsensus	commit \| commitdiff \| tree
2005-08-15	amwaterhouse	Dont color Checking... red	commit \| commitdiff \| tree
2005-08-15	amwaterhouse	Declare variables outside loops	commit \| commitdiff \| tree
2005-08-15	amwaterhouse	Calculate gap and nogap ratio here	commit \| commitdiff \| tree
2005-08-09	amwaterhouse	Add notes on proxy settings	commit \| commitdiff \| tree
2005-08-09	amwaterhouse	InstallAnywhere readme	commit \| commitdiff \| tree
2005-08-09	amwaterhouse	New classes	commit \| commitdiff \| tree
2005-08-09	amwaterhouse	Cache.getDefault	commit \| commitdiff \| tree
2005-08-09	amwaterhouse	Proxy server, default browser, multiple links added	commit \| commitdiff \| tree
2005-08-09	amwaterhouse	cache.getDefault	commit \| commitdiff \| tree
2005-08-09	amwaterhouse	Try/catch loading default icons	commit \| commitdiff \| tree
2005-08-09	amwaterhouse	Splash screen is repainted when checking latest version	commit \| commitdiff \| tree
2005-08-09	amwaterhouse	Handle multiple url links	commit \| commitdiff \| tree
2005-08-09	amwaterhouse	Can give a name to new browser window	commit \| commitdiff \| tree
2005-08-09	amwaterhouse	Properties file is used in preference to viewport/cache...	commit \| commitdiff \| tree
2005-08-09	amwaterhouse	Edit/add/delete a sequence link	commit \| commitdiff \| tree
2005-08-09	amwaterhouse	Applet handles multiple sequence links	commit \| commitdiff \| tree
2005-08-04	amwaterhouse	Add docs in build	commit \| commitdiff \| tree
2005-08-03	amwaterhouse	Fix for user entering number in search window	commit \| commitdiff \| tree
2005-08-03	amwaterhouse	Version 2.02	commit \| commitdiff \| tree
2005-08-03	amwaterhouse	1 & -1	commit \| commitdiff \| tree
2005-08-03	amwaterhouse	Trees aren't save in headless state in this version	commit \| commitdiff \| tree
2005-08-03	amwaterhouse	Loading thread moved to io.FileLoader	commit \| commitdiff \| tree
2005-08-03	amwaterhouse	Use Container to get fontMetrics	commit \| commitdiff \| tree
2005-08-03	amwaterhouse	FileLoading removed from desktop	commit \| commitdiff \| tree
2005-08-03	amwaterhouse	Can run headless=true	commit \| commitdiff \| tree
2005-08-02	amwaterhouse	Use font.getName, not font.getFontName	commit \| commitdiff \| tree
2005-07-29	amwaterhouse	Remove ref to ServletGUI	commit \| commitdiff \| tree
2005-07-29	amwaterhouse	use 1 & -1 if start/end not specified	commit \| commitdiff \| tree
2005-07-29	amwaterhouse	if endRes <1, calc the endRes	commit \| commitdiff \| tree
2005-07-29	amwaterhouse	Correct label for end res in copy	commit \| commitdiff \| tree
2005-07-19	amwaterhouse	v2.02	commit \| commitdiff \| tree
2005-07-18	amwaterhouse	backslash irrelevant in java	commit \| commitdiff \| tree
2005-07-18	amwaterhouse	Copy seq ordering bug fixed	commit \| commitdiff \| tree
2005-07-18	amwaterhouse	Output redirected to output.txt	commit \| commitdiff \| tree
2005-07-18	amwaterhouse	Remove .txt, add command line instruction	commit \| commitdiff \| tree
2005-07-12	amwaterhouse	homepage must have http:// at beginning	commit \| commitdiff \| tree
2005-07-11	amwaterhouse	put jalview.jar first in jnlp	commit \| commitdiff \| tree
2005-07-11	amwaterhouse	Version changes	commit \| commitdiff \| tree
2005-07-11	amwaterhouse	Jnlp info updated	commit \| commitdiff \| tree
2005-07-11	amwaterhouse	Must check if group.sequences are null in remove gaps	commit \| commitdiff \| tree
2005-07-11	amwaterhouse	Consume if enter pressed	commit \| commitdiff \| tree
2005-07-11	amwaterhouse	Listen for return key	commit \| commitdiff \| tree
2005-07-11	amwaterhouse	check groupsize is non zero	commit \| commitdiff \| tree
2005-07-11	amwaterhouse	setIconImage	commit \| commitdiff \| tree
2005-07-11	amwaterhouse	typo	commit \| commitdiff \| tree
2005-07-11	amwaterhouse	image changed	commit \| commitdiff \| tree
2005-07-11	amwaterhouse	libraries??	commit \| commitdiff \| tree
2005-07-11	amwaterhouse	Add test case if code version not found	commit \| commitdiff \| tree
2005-07-11	amwaterhouse	Version changes	commit \| commitdiff \| tree
2005-07-11	amwaterhouse	Write jalview.version in resources	commit \| commitdiff \| tree
2005-07-11	amwaterhouse	this.installIcons	commit \| commitdiff \| tree
2005-07-11	amwaterhouse	Release and build date methods changed	commit \| commitdiff \| tree
2005-07-11	amwaterhouse	Writes .build_properties file for build date and version	commit \| commitdiff \| tree
2005-07-07	amwaterhouse	Runs if no files to open and -nodisplay is not used	commit \| commitdiff \| tree
2005-07-07	amwaterhouse	press del to cut	commit \| commitdiff \| tree
2005-07-07	amwaterhouse	delete markers from start to end	commit \| commitdiff \| tree
2005-07-07	amwaterhouse	Remove all gaps must check jSize	commit \| commitdiff \| tree
2005-07-06	amwaterhouse	Remove group if sequences are null	commit \| commitdiff \| tree
2005-07-06	amwaterhouse	Help file url changed	commit \| commitdiff \| tree
2005-07-06	amwaterhouse	dont add null group	commit \| commitdiff \| tree
2005-07-06	amwaterhouse	Sequence to Uppercase before checksum	commit \| commitdiff \| tree
2005-06-30	amwaterhouse	Formatting changes	commit \| commitdiff \| tree
2005-06-30	amwaterhouse	Not used in Jalview	commit \| commitdiff \| tree
2005-06-30	amwaterhouse	Put all libraries in Project space	commit \| commitdiff \| tree
2005-06-30	amwaterhouse	dont check disk space, redirect stdout	commit \| commitdiff \| tree
2005-06-30	amwaterhouse	wsld missing from cvs archive	commit \| commitdiff \| tree
2005-06-20	amwaterhouse	readme	commit \| commitdiff \| tree
2005-06-17	amwaterhouse	Target is 1.4	commit \| commitdiff \| tree
2005-06-16	amwaterhouse	Moved to new repository	commit \| commitdiff \| tree
2005-06-16	amwaterhouse	moved to new repository	commit \| commitdiff \| tree
2005-06-16	amwaterhouse	InstallAnywhere config	commit \| commitdiff \| tree
2005-06-16	amwaterhouse	dont add sequence twice to new group	commit \| commitdiff \| tree
2005-06-16	amwaterhouse	Sort Groups modified	commit \| commitdiff \| tree
2005-06-16	amwaterhouse	dont convert to uppercase	commit \| commitdiff \| tree
2005-06-16	amwaterhouse	textarea replaces textfield - can cut and paste sequence...	commit \| commitdiff \| tree
2005-06-16	amwaterhouse	remove gaps applies to selected area	commit \| commitdiff \| tree
2005-06-15	amwaterhouse	use .jalview.uniprot.xml	commit \| commitdiff \| tree
2005-06-15	amwaterhouse	Check colours not null	commit \| commitdiff \| tree
2005-06-15	amwaterhouse	check colourscheme is not null	commit \| commitdiff \| tree
2005-06-15	amwaterhouse	paintrefresher	commit \| commitdiff \| tree
2005-06-15	amwaterhouse	add/remove updated	commit \| commitdiff \| tree
2005-06-15	amwaterhouse	Column selection changed	commit \| commitdiff \| tree
2005-06-15	amwaterhouse	REmove commented out lines	commit \| commitdiff \| tree
2005-06-15	amwaterhouse	allow for fastpaint	commit \| commitdiff \| tree
2005-06-15	amwaterhouse	add / remove editable columns	commit \| commitdiff \| tree
2005-06-15	amwaterhouse	Tooltip changed	commit \| commitdiff \| tree
2005-06-14	amwaterhouse	change name of uniprot file	commit \| commitdiff \| tree
2005-06-14	amwaterhouse	add version	commit \| commitdiff \| tree
2005-06-14	amwaterhouse	remove system.out	commit \| commitdiff \| tree
2005-06-14	amwaterhouse	update conservation colours after edit	commit \| commitdiff \| tree
2005-06-14	amwaterhouse	ToolTip updated	commit \| commitdiff \| tree
2005-06-14	amwaterhouse	add value to conservation mouseover	commit \| commitdiff \| tree
2005-06-14	amwaterhouse	if seq is null, dont check pdb	commit \| commitdiff \| tree
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