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2005-10-27	amwaterhouse	Allow old style groups file	commit \| commitdiff \| tree
2005-10-27	amwaterhouse	Remove system.out	commit \| commitdiff \| tree
2005-10-27	amwaterhouse	Remove static refs to applet	commit \| commitdiff \| tree
2005-10-27	amwaterhouse	MyGraphics added to enhance applet GUI	commit \| commitdiff \| tree
2005-10-26	amwaterhouse	Groups file is now feature file	commit \| commitdiff \| tree
2005-10-26	amwaterhouse	Parsing updates	commit \| commitdiff \| tree
2005-10-26	amwaterhouse	vamsasDemo new branch	commit \| commitdiff \| tree
2005-10-26	amwaterhouse	Used for sequence feature mapping	commit \| commitdiff \| tree
2005-10-07	amwaterhouse	comma separated rgb values	commit \| commitdiff \| tree
2005-10-07	amwaterhouse	getalignment method added	commit \| commitdiff \| tree
2005-10-07	amwaterhouse	Quick fix for reading sequence	commit \| commitdiff \| tree
2005-10-07	amwaterhouse	Select all cutandpaste	commit \| commitdiff \| tree
2005-10-07	amwaterhouse	Don't exit if file not found and not headless	commit \| commitdiff \| tree
2005-10-05	amwaterhouse	Sequence start end added for the time being	commit \| commitdiff \| tree
2005-10-03	amwaterhouse	Remove float width	commit \| commitdiff \| tree
2005-10-03	amwaterhouse	Request focus for new frames	commit \| commitdiff \| tree
2005-10-03	amwaterhouse	Return if no searchString	commit \| commitdiff \| tree
2005-10-03	amwaterhouse	Keylistener added to internalFrame	commit \| commitdiff \| tree
2005-10-03	amwaterhouse	Remove development code	commit \| commitdiff \| tree
2005-10-03	amwaterhouse	Remove redundancy from eclipse	commit \| commitdiff \| tree
2005-09-30	amwaterhouse	Remove redundancy from Eclipse	commit \| commitdiff \| tree
2005-09-30	amwaterhouse	Restore file before eclipse changes	commit \| commitdiff \| tree
2005-09-30	amwaterhouse	Remove redundancy in Eclipse	commit \| commitdiff \| tree
2005-09-29	amwaterhouse	Take into account scroll value	commit \| commitdiff \| tree
2005-09-28	amwaterhouse	use lower case home.png	commit \| commitdiff \| tree
2005-09-28	amwaterhouse	Applet frame name	commit \| commitdiff \| tree
2005-09-28	amwaterhouse	Set frame size each applet	commit \| commitdiff \| tree
2005-09-28	amwaterhouse	Remove latestVersion if null	commit \| commitdiff \| tree
2005-09-28	amwaterhouse	Remove latestVersion if null	commit \| commitdiff \| tree
2005-09-28	amwaterhouse	2.06	commit \| commitdiff \| tree
2005-09-28	amwaterhouse	Put clip back in	commit \| commitdiff \| tree
2005-09-28	amwaterhouse	Change font	commit \| commitdiff \| tree
2005-09-28	amwaterhouse	More features for PCA	commit \| commitdiff \| tree
2005-09-28	amwaterhouse	Wrap alignment with annotations	commit \| commitdiff \| tree
2005-09-28	amwaterhouse	New params	commit \| commitdiff \| tree
2005-09-27	amwaterhouse	Show labels in wrapped view	commit \| commitdiff \| tree
2005-09-23	amwaterhouse	Draw labels, anti alias	commit \| commitdiff \| tree
2005-09-23	amwaterhouse	Capture output as details	commit \| commitdiff \| tree
2005-09-23	amwaterhouse	Right click copy/paste popup	commit \| commitdiff \| tree
2005-09-23	amwaterhouse	Now an InternalFrame with menus	commit \| commitdiff \| tree
2005-09-22	amwaterhouse	SetAnnotationVisible - ignore if wrapped	commit \| commitdiff \| tree
2005-09-22	amwaterhouse	Create Instance of FormatAdapter	commit \| commitdiff \| tree
2005-09-22	amwaterhouse	Dont calculate conservation for nucleotides	commit \| commitdiff \| tree
2005-09-22	amwaterhouse	isNucleotide	commit \| commitdiff \| tree
2005-09-22	amwaterhouse	Create instance of FormatAdapter	commit \| commitdiff \| tree
2005-09-22	amwaterhouse	Add nucleotide names	commit \| commitdiff \| tree
2005-09-22	amwaterhouse	Display nucleotides	commit \| commitdiff \| tree
2005-09-22	amwaterhouse	Break if regex not found	commit \| commitdiff \| tree
2005-09-22	amwaterhouse	If Mac user hasnt selected file format, give warning	commit \| commitdiff \| tree
2005-09-22	amwaterhouse	Wrap alignment with annotations	commit \| commitdiff \| tree
2005-09-22	amwaterhouse	Check if filefilter is null	commit \| commitdiff \| tree
2005-09-21	amwaterhouse	Jalview	commit \| commitdiff \| tree
2005-09-21	amwaterhouse	Sequences must be aligned before PCA	commit \| commitdiff \| tree
2005-09-21	amwaterhouse	Next active Frame losing focus bug fixed	commit \| commitdiff \| tree
2005-09-20	amwaterhouse	Use gtk icons	commit \| commitdiff \| tree
2005-09-20	amwaterhouse	GTK icons	commit \| commitdiff \| tree
2005-09-20	amwaterhouse	Add carriage return after memory settings	commit \| commitdiff \| tree
2005-09-20	amwaterhouse	Checks end of sequence before drawing text	commit \| commitdiff \| tree
2005-09-20	amwaterhouse	Format label left align	commit \| commitdiff \| tree
2005-09-20	amwaterhouse	Optimise copy image	commit \| commitdiff \| tree
2005-09-20	amwaterhouse	PCAPanel checks viewport selection group	commit \| commitdiff \| tree
2005-09-20	amwaterhouse	PCAPanel checks viewport selection	commit \| commitdiff \| tree
2005-09-20	amwaterhouse	PCAPanel just requires viewport	commit \| commitdiff \| tree
2005-09-20	amwaterhouse	Help gets bounds from help map file	commit \| commitdiff \| tree
2005-09-20	amwaterhouse	New methods in treePanel	commit \| commitdiff \| tree
2005-09-20	amwaterhouse	Null pointer if user presses shift before anything...	commit \| commitdiff \| tree
2005-09-20	amwaterhouse	Align labels format left	commit \| commitdiff \| tree
2005-09-20	amwaterhouse	Optimise graphics copy object	commit \| commitdiff \| tree
2005-09-20	amwaterhouse	Use selectionGroup to find chosen sequences	commit \| commitdiff \| tree
2005-09-20	amwaterhouse	Make sure fontmetrics is not null	commit \| commitdiff \| tree
2005-09-19	amwaterhouse	Make sure fontmetrics exists for headless state	commit \| commitdiff \| tree
2005-09-19	amwaterhouse	Dont add ServiceListeners if desktop is null	commit \| commitdiff \| tree
2005-09-19	amwaterhouse	Alignment of node labels modified	commit \| commitdiff \| tree
2005-09-19	amwaterhouse	ShowDistances, placeHolders and bootstraps have their...	commit \| commitdiff \| tree
2005-09-16	amwaterhouse	Check image is not null in fast paint	commit \| commitdiff \| tree
2005-09-16	amwaterhouse	Set distanceMenu selected true	commit \| commitdiff \| tree
2005-09-15	amwaterhouse	Memory settings added to help	commit \| commitdiff \| tree
2005-09-15	amwaterhouse	Correct date	commit \| commitdiff \| tree
2005-09-15	amwaterhouse	Copy uses fasta format	commit \| commitdiff \| tree
2005-09-15	amwaterhouse	2.05b	commit \| commitdiff \| tree
2005-09-15	amwaterhouse	Add Uracil as X unknown	commit \| commitdiff \| tree
2005-09-15	amwaterhouse	OptionPane warning for out of memory	commit \| commitdiff \| tree
2005-09-15	amwaterhouse	remove system.out	commit \| commitdiff \| tree
2005-09-15	amwaterhouse	Remove key listener	commit \| commitdiff \| tree
2005-09-15	amwaterhouse	Dont add time to build date	commit \| commitdiff \| tree
2005-09-15	amwaterhouse	Add main-class to jar files	commit \| commitdiff \| tree
2005-09-15	amwaterhouse	Use equalsIgnoreCase	commit \| commitdiff \| tree
2005-09-15	amwaterhouse	Applet has main method, excutable	commit \| commitdiff \| tree
2005-09-15	amwaterhouse	Logger moved to prefs so that class not found error...	commit \| commitdiff \| tree
2005-09-14	amwaterhouse	Preferences updated	commit \| commitdiff \| tree
2005-09-14	amwaterhouse	Move bootStrap/distance settings outside thread	commit \| commitdiff \| tree
2005-09-14	amwaterhouse	Add end of consensus test for wrapped edit	commit \| commitdiff \| tree
2005-09-14	amwaterhouse	fullSeqId should follow preference value	commit \| commitdiff \| tree
2005-09-14	amwaterhouse	Make new frame selected	commit \| commitdiff \| tree
2005-09-14	amwaterhouse	Remove system out tests	commit \| commitdiff \| tree
2005-09-14	amwaterhouse	Copy and paste uses FASTA format	commit \| commitdiff \| tree
2005-09-14	amwaterhouse	Call methods in treeCanvas on init	commit \| commitdiff \| tree
2005-09-14	amwaterhouse	offy changes	commit \| commitdiff \| tree
2005-09-14	amwaterhouse	OutOfMemory try catch	commit \| commitdiff \| tree
2005-09-14	amwaterhouse	Use font size, not font height	commit \| commitdiff \| tree
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