| 2007-03-23 |
amwaterhouse | loadingFromArchive flag added
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commit | commitdiff | tree |
| 2007-03-23 |
amwaterhouse | run halt hidden, help moved to menu item for stupid...
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commit | commitdiff | tree |
| 2007-03-22 |
amwaterhouse | save structures
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commit | commitdiff | tree |
| 2007-03-22 |
amwaterhouse | Commented out userDefColours for compilation. Class...
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commit | commitdiff | tree |
| 2007-03-22 |
amwaterhouse | Now a JPanel, plus some modifications
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commit | commitdiff | tree |
| 2007-03-22 |
amwaterhouse | Check exploded pos is not the same as current frame
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commit | commitdiff | tree |
| 2007-03-22 |
amwaterhouse | Set gatherViewsHere false when making a new tab
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commit | commitdiff | tree |
| 2007-03-22 |
amwaterhouse | Saves structures
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commit | commitdiff | tree |
| 2007-03-22 |
amwaterhouse | Jalview colours added to Jmol
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commit | commitdiff | tree |
| 2007-03-22 |
amwaterhouse | Saves Jmol status
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commit | commitdiff | tree |
| 2007-02-27 |
amwaterhouse | Uncomment graphics 2d bit
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commit | commitdiff | tree |
| 2007-02-27 |
amwaterhouse | Launch applet jmol
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commit | commitdiff | tree |
| 2007-02-27 |
amwaterhouse | Use paintAlignment
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commit | commitdiff | tree |
| 2007-02-27 |
amwaterhouse | check conservation length
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commit | commitdiff | tree |
| 2007-02-27 |
amwaterhouse | Structure listener
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commit | commitdiff | tree |
| 2007-02-27 |
amwaterhouse | remove p+3 < query.length
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commit | commitdiff | tree |
| 2007-02-27 |
amwaterhouse | No longer use ref to seqcanvas for painting
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commit | commitdiff | tree |
| 2007-02-27 |
amwaterhouse | blank space for chain name if empty
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commit | commitdiff | tree |
| 2007-02-27 |
amwaterhouse | keep record of atomIndeX
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commit | commitdiff | tree |
| 2007-02-27 |
amwaterhouse | jmol added
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commit | commitdiff | tree |
| 2007-02-27 |
amwaterhouse | jmol
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commit | commitdiff | tree |
| 2007-02-12 |
amwaterhouse | version 3.7
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commit | commitdiff | tree |
| 2007-02-12 |
amwaterhouse | date added
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commit | commitdiff | tree |
| 2007-02-12 |
amwaterhouse | >0 rather than -1 check
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commit | commitdiff | tree |
| 2007-02-12 |
amwaterhouse | Reload jar files
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commit | commitdiff | tree |
| 2007-02-12 |
amwaterhouse | Hashtable for previously loaded pdb files
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commit | commitdiff | tree |
| 2007-02-12 |
amwaterhouse | Make checkbox bigger for text on mac
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commit | commitdiff | tree |
| 2007-02-07 |
amwaterhouse | formatted
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commit | commitdiff | tree |
| 2007-02-07 |
amwaterhouse | restore unformatted state
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commit | commitdiff | tree |
| 2007-02-07 |
amwaterhouse | Formatting
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commit | commitdiff | tree |
| 2007-02-07 |
amwaterhouse | formatting
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commit | commitdiff | tree |
| 2007-02-07 |
amwaterhouse | Extend annotation if too short
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commit | commitdiff | tree |
| 2007-02-07 |
amwaterhouse | reload, just close this frame and open a new one
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commit | commitdiff | tree |
| 2007-02-07 |
amwaterhouse | 2.2.1 changes
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commit | commitdiff | tree |
| 2007-02-07 |
amwaterhouse | removed
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commit | commitdiff | tree |
| 2007-02-06 |
amwaterhouse | 2.2.1 updates
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commit | commitdiff | tree |
| 2007-02-06 |
amwaterhouse | Dont add null description to tooltip
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commit | commitdiff | tree |
| 2007-02-06 |
amwaterhouse | Applet params cant read tab character
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commit | commitdiff | tree |
| 2007-02-06 |
amwaterhouse | Allow for frame insets
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commit | commitdiff | tree |
| 2007-02-06 |
amwaterhouse | Format label
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commit | commitdiff | tree |
| 2007-02-05 |
amwaterhouse | Alignment editing columns 0 and 1 fixed
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commit | commitdiff | tree |
| 2007-02-05 |
amwaterhouse | Fixed bug in trim right annotation adjust
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commit | commitdiff | tree |
| 2007-02-05 |
amwaterhouse | stop flickering annotationPanel
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commit | commitdiff | tree |
| 2007-02-05 |
amwaterhouse | Fixed bug in trim right annotation adjust
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commit | commitdiff | tree |
| 2007-02-05 |
amwaterhouse | image is panel size
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commit | commitdiff | tree |
| 2007-02-05 |
amwaterhouse | applet can define groups as parameters
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commit | commitdiff | tree |
| 2007-02-02 |
amwaterhouse | Dont add group if seqs not found
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commit | commitdiff | tree |
| 2007-02-02 |
amwaterhouse | getWidth -1 for trim right
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commit | commitdiff | tree |
| 2007-02-02 |
amwaterhouse | check annotation size when cutting
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commit | commitdiff | tree |
| 2007-02-02 |
amwaterhouse | annotation might have been deleted
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commit | commitdiff | tree |
| 2007-02-02 |
amwaterhouse | catch control down before editing null pointer
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commit | commitdiff | tree |
| 2007-02-02 |
amwaterhouse | 22 = scrollbar and insets widthcvs diff gui/AlignmentPanel...
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commit | commitdiff | tree |
| 2007-02-02 |
amwaterhouse | Must allow for scollbar and frame insets when getting...
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commit | commitdiff | tree |
| 2007-02-02 |
amwaterhouse | LookandFeel must be set in headless state as window...
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commit | commitdiff | tree |
| 2007-02-01 |
amwaterhouse | removed deprecated bits
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commit | commitdiff | tree |
| 2007-02-01 |
amwaterhouse | find colours uncommented
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commit | commitdiff | tree |
| 2007-02-01 |
amwaterhouse | sequence.getStart() in findTrueIndex
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commit | commitdiff | tree |
| 2007-02-01 |
amwaterhouse | get fontmetrics from pg
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commit | commitdiff | tree |
| 2007-02-01 |
amwaterhouse | Dont add null tooltip
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commit | commitdiff | tree |
| 2007-02-01 |
amwaterhouse | New description
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commit | commitdiff | tree |
| 2007-02-01 |
amwaterhouse | tooltips
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commit | commitdiff | tree |
| 2007-02-01 |
amwaterhouse | set description for groups
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commit | commitdiff | tree |
| 2007-02-01 |
amwaterhouse | Doesnt move with mouse, friendlier for mac users
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commit | commitdiff | tree |
| 2007-02-01 |
amwaterhouse | Dont repaint tooltip
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commit | commitdiff | tree |
| 2007-02-01 |
amwaterhouse | One class for edit name/description
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commit | commitdiff | tree |
| 2007-01-31 |
amwaterhouse | slightly larger window edit name/desc
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commit | commitdiff | tree |
| 2007-01-31 |
amwaterhouse | edit annotation name/description
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commit | commitdiff | tree |
| 2007-01-31 |
amwaterhouse | Can edit annotation name/description
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commit | commitdiff | tree |
| 2007-01-31 |
amwaterhouse | Consensus, conservation, quality labels may have changed
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commit | commitdiff | tree |
| 2007-01-31 |
amwaterhouse | aligned not used
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commit | commitdiff | tree |
| 2007-01-31 |
amwaterhouse | Dont export annotations if not visible
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commit | commitdiff | tree |
| 2007-01-31 |
amwaterhouse | Unique name for new group and treegroup
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commit | commitdiff | tree |
| 2007-01-31 |
amwaterhouse | Adjust features when cutting and pasting
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commit | commitdiff | tree |
| 2007-01-31 |
amwaterhouse | make new dataset seq if residues deleted
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commit | commitdiff | tree |
| 2007-01-31 |
amwaterhouse | copy feature: check for null values
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commit | commitdiff | tree |
| 2007-01-31 |
amwaterhouse | aligned not used
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commit | commitdiff | tree |
| 2007-01-30 |
amwaterhouse | Check valid residues in ss
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commit | commitdiff | tree |
| 2007-01-30 |
amwaterhouse | Check seqs in group exist in this alignment
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commit | commitdiff | tree |
| 2007-01-30 |
amwaterhouse | Any character non aa or nucleotide is a space
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commit | commitdiff | tree |
| 2007-01-30 |
amwaterhouse | moved painting routine
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commit | commitdiff | tree |
| 2007-01-30 |
amwaterhouse | consensusColouring never used
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commit | commitdiff | tree |
| 2007-01-30 |
amwaterhouse | Draw helices correctly
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commit | commitdiff | tree |
| 2007-01-30 |
amwaterhouse | Use util toHexString
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commit | commitdiff | tree |
| 2007-01-30 |
amwaterhouse | Output groups in annotation file
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commit | commitdiff | tree |
| 2007-01-29 |
amwaterhouse | Dont clear graphics g before drawing the image
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commit | commitdiff | tree |
| 2007-01-29 |
amwaterhouse | Image for labels, stops flickering
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commit | commitdiff | tree |
| 2007-01-29 |
amwaterhouse | New view copies annotations across
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commit | commitdiff | tree |
| 2007-01-29 |
amwaterhouse | Tooltips for group names, descriptions
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commit | commitdiff | tree |
| 2007-01-29 |
amwaterhouse | Description added
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commit | commitdiff | tree |
| 2007-01-29 |
amwaterhouse | SequenceGroup parsing added to annotation file
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commit | commitdiff | tree |
| 2007-01-29 |
amwaterhouse | ID_ITALICS option in preferences
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commit | commitdiff | tree |
| 2007-01-29 |
amwaterhouse | scaleAbove, left and right set when tab selection changes
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commit | commitdiff | tree |
| 2007-01-29 |
amwaterhouse | Marios annotation bug fixed
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commit | commitdiff | tree |
| 2007-01-26 |
amwaterhouse | AnnotationId is hashcode of object
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commit | commitdiff | tree |
| 2007-01-26 |
amwaterhouse | Only set the sequence oncecvs diff datamodel/Alignment...
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commit | commitdiff | tree |
| 2007-01-26 |
amwaterhouse | Adjusts annotations for sequence edits
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commit | commitdiff | tree |
| 2007-01-26 |
amwaterhouse | If its null, set tip empty
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commit | commitdiff | tree |
| 2007-01-25 |
amwaterhouse | Command takes alignment, not gapChar
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commit | commitdiff | tree |
| 2007-01-25 |
amwaterhouse | Annotations move when full alignment edited
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commit | commitdiff | tree |
| 2007-01-25 |
amwaterhouse | Annotation adjustment moved to EditCommand
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commit | commitdiff | tree |
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