git://source.jalview.org
/
jalview.git
/ search
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
|
commitdiff
|
tree
first
⋅
prev
⋅
next
Merge branch 'JAL-3878_ws-overhaul-3' into with_ws_overhaul-3
2021-09-14
Jim Procter
JAL-3829 test flakiness and human flakiness
commit
|
commitdiff
|
tree
2021-09-14
Jim Procter
JAL-3829 more info on test fail - seems to be flaky
commit
|
commitdiff
|
tree
2021-09-14
Jim Procter
Merge branch 'develop' into releases/Release_2_11_2_Branch
commit
|
commitdiff
|
tree
2021-09-14
Jim Procter
Merge branch 'features/r2_11_2/JAL-3829_3dbeacons'...
commit
|
commitdiff
|
tree
2021-09-14
Jim Procter
JAL-3551 - doc tweak
commit
|
commitdiff
|
tree
2021-09-14
Jim Procter
JAL-3855 JAL-3829 better checks on PDB or mmCIF file...
commit
|
commitdiff
|
tree
2021-09-14
Jim Procter
JAL-3829 JAL-3855 moved routing for retrieving structures...
commit
|
commitdiff
|
tree
2021-09-14
Jim Procter
JAL-3829 JAL-3855 ignore case when detecting alphafold ID
commit
|
commitdiff
|
tree
2021-09-14
Jim Procter
JAL-3855 detect an alphafold model and import its temperatur...
commit
|
commitdiff
|
tree
2021-09-14
Jim Procter
JAL-3829 move mock query and responses to files
commit
|
commitdiff
|
tree
2021-09-14
Jim Procter
Merge branch 'develop' into features/r2_11_2/JAL-3829_3dbeacons
commit
|
commitdiff
|
tree
2021-09-14
Jim Procter
Merge branch 'feature/JAL-2422ChimeraX' into develop
commit
|
commitdiff
|
tree
2021-09-14
Jim Procter
JAL-3829 3d-beacons doesn’t work as a sequence source...
commit
|
commitdiff
|
tree
2021-09-14
Jim Procter
JAL-3829 avoid sending rubbish to PDBe search api
commit
|
commitdiff
|
tree
2021-09-14
Jim Procter
JAL-3829 some providers don’t provide model quality...
commit
|
commitdiff
|
tree
2021-09-14
Jim Procter
JAL-3829 allow multiple URL mocks and include P01308...
commit
|
commitdiff
|
tree
2021-09-13
Jim Procter
Merge branch 'releases/Release_2_11_2_Branch' into...
commit
|
commitdiff
|
tree
2021-09-13
Jim Procter
Merge branch 'features/r2_11_2/JAL-3829_3dbeacons'...
commit
|
commitdiff
|
tree
2021-09-13
Jim Procter
Merge branch 'features/r2_11_2/JAL-3829_3dbeacons'...
commit
|
commitdiff
|
tree
2021-09-13
Jim Procter
JAL-3829 ensure unmock the FTS PDB and TDB clients...
commit
|
commitdiff
|
tree
2021-09-13
Jim Procter
JAL-3829 minimal test of additional TDB filters - not...
commit
|
commitdiff
|
tree
2021-09-13
Jim Procter
JAL-3829 select single best TDB structure and select...
commit
|
commitdiff
|
tree
2021-09-12
Jim Procter
JAL-3829 JalviewJS workarounds/patches
commit
|
commitdiff
|
tree
2021-09-12
Jim Procter
JAL-3829 upgrade Jmol to 14.31.53, SwingJS-JSMol to...
commit
|
commitdiff
|
tree
2021-09-11
Jim Procter
JAL-3829 ensure tests use mocked service - proper exception...
commit
|
commitdiff
|
tree
2021-09-11
Jim Procter
JAL-3829 patch failing tests and todo for future
commit
|
commitdiff
|
tree
2021-09-10
Jim Procter
JAL-3829 provide both PDBe queries and 3D-Beacons queries...
commit
|
commitdiff
|
tree
2021-09-10
Jim Procter
JAL-3829 insert title for structures from PDBe
commit
|
commitdiff
|
tree
2021-09-10
Jim Procter
JAL-3829 update for v1.0 3d-beacons api spec
commit
|
commitdiff
|
tree
2021-09-10
Jim Procter
JAL-3829 point at production 3d-beacons url
commit
|
commitdiff
|
tree
2021-09-08
Jim Procter
JAL-3829 refactor and JAL-3391 JAL-2935 first stab...
commit
|
commitdiff
|
tree
2021-09-08
Jim Procter
JAL-3829 allow client-side selection of structures...
commit
|
commitdiff
|
tree
2021-09-08
Jim Procter
JAL-3829 JAL-3868 TODO
commit
|
commitdiff
|
tree
2021-09-08
Jim Procter
JAL-3829 formatting
commit
|
commitdiff
|
tree
2021-09-08
Jim Procter
JAL-3829 integration test verifying mock response is...
commit
|
commitdiff
|
tree
2021-09-06
Jim Procter
JAL-3829 work in progress - look up additional metadata...
commit
|
commitdiff
|
tree
2021-09-06
Jim Procter
JAL-3829 look up column in FTS data
commit
|
commitdiff
|
tree
2021-09-06
Jim Procter
JAL-3829 mocking for PDBFTS for related query to UniprotFTS...
commit
|
commitdiff
|
tree
2021-09-06
Jim Procter
JAL-3829 pull out structure chooser query source tests...
commit
|
commitdiff
|
tree
2021-09-03
Jim Procter
JAL-3829 JAL-3865 test structure chooser queries to...
commit
|
commitdiff
|
tree
2021-09-03
Jim Procter
JAL-3829 use sequence dependent constructor for structure...
commit
|
commitdiff
|
tree
2021-09-03
Jim Procter
JAL-3829 mocking for testing 3D-Beacons FTS endpoint
commit
|
commitdiff
|
tree
2021-09-03
Jim Procter
JAL-3863 promote non-canonical version of dbref to...
commit
|
commitdiff
|
tree
2021-09-03
Jim Procter
JAL-3829 comments on the 3D structure chooser’s initialisati...
commit
|
commitdiff
|
tree
2021-09-03
Jim Procter
JAL-3865 isolate PDB and TDB clients and last query...
commit
|
commitdiff
|
tree
2021-09-03
Jim Procter
JAL-3863 passing test to verify a uniprot accession...
commit
|
commitdiff
|
tree
2021-09-03
Jim Procter
JAL-3829 JAL-3865 StructureChooserQuerySource implementation...
commit
|
commitdiff
|
tree
2021-09-03
Jim Procter
JAL-3855 don’t need to query Alphafold2 repository...
commit
|
commitdiff
|
tree
2021-09-03
Jim Procter
JAL-3829 refactored FilterOption provider to the StructureCh...
commit
|
commitdiff
|
tree
2021-09-02
Jim Procter
Merge branch 'develop' into features/r2_11_2/JAL-3829_3dbeacons
commit
|
commitdiff
|
tree
2021-09-02
Jim Procter
Merge branch 'cherry-pick/r2_11_2_JAL-3509' into develop
commit
|
commitdiff
|
tree
2021-08-30
Jim Procter
JAL-3863 fix test and note about fragility
commit
|
commitdiff
|
tree
2021-08-30
Jim Procter
JAL-3863 add canonical DBRefEntry flag to Jalview project
commit
|
commitdiff
|
tree
2021-08-30
Jim Procter
JAL-3829 generalised Alphafold retrieval mechanism...
commit
|
commitdiff
|
tree
2021-08-30
Jim Procter
JAL-3863 mark first accession retrieved from Uniprot...
commit
|
commitdiff
|
tree
2021-08-30
Jim Procter
JAL-3829 Structure chooser specific FTS interface and...
commit
|
commitdiff
|
tree
2021-08-30
Jim Procter
Merge branch 'feature/JAL-3855_ebi_alphafold_import...
commit
|
commitdiff
|
tree
2021-08-30
Jim Procter
JAL-3829 3d-beacons structure chooser logic (not yet...
commit
|
commitdiff
|
tree
2021-08-30
Jim Procter
JAL-3829 pulled out more of the FTS dependent parts...
commit
|
commitdiff
|
tree
2021-08-30
Jim Procter
JAL-3829 updated tests for 3db fetcher’s working FTS...
commit
|
commitdiff
|
tree
2021-08-30
Jim Procter
JAL-3829 proof in principle 3d-beacons sequence fetcher...
commit
|
commitdiff
|
tree
2021-08-30
Jim Procter
JAL-3829 3d-beacons has a custom alignment retrieval...
commit
|
commitdiff
|
tree
2021-08-30
Jim Procter
JAL-3674 Jmol seems to sometimes return a null for...
commit
|
commitdiff
|
tree
2021-08-30
Jim Procter
JAL-3829 fixed up the 3d-beacons data columns definitions...
commit
|
commitdiff
|
tree
2021-08-30
Jim Procter
JAL-3829 JAL-2176 - TODO re unused argument in FTSRestClientI
commit
|
commitdiff
|
tree
2021-08-30
Jim Procter
JAL-3829 tidying up PDBFTSRestClient test responses...
commit
|
commitdiff
|
tree
2021-08-30
Jim Procter
JAL-3829 Javadoc for FTSColumnPreferences
commit
|
commitdiff
|
tree
2021-08-30
Jim Procter
JAL-3829 pushed the PDBFTSClient specific code to new...
commit
|
commitdiff
|
tree
2021-08-30
Jim Procter
JAL-3829 removed unneeded attribute in FTS core
commit
|
commitdiff
|
tree
2021-07-27
Jim Procter
JAL-3674 Jmol seems to sometimes return a null for...
commit
|
commitdiff
|
tree
2021-07-27
Jim Procter
JAL-3855 suppress NPE when trying to retrieve SIFTS...
commit
|
commitdiff
|
tree
2021-07-27
Jim Procter
JAL-3855 ALPHAFOLD database source based on the PDB...
commit
|
commitdiff
|
tree
2021-07-27
Jim Procter
JAL-3855 check if an alpha fold ID and retrieve using...
commit
|
commitdiff
|
tree
2021-07-27
Jim Procter
JAL-3855 check for existence of an alpha fold model...
commit
|
commitdiff
|
tree
2021-07-27
Jim Procter
JAL-3855 convenience method to check a URL will return...
commit
|
commitdiff
|
tree
2021-07-25
Jim Procter
JAL-3854 patched SeqSeqUtils.deUniquify to not use...
commit
|
commitdiff
|
tree
2021-07-25
Jim Procter
JAL-2994 disable tests for FileUtils path search methods...
commit
|
commitdiff
|
tree
2021-07-25
Jim Procter
JAL-3848 slivka preferences in javascript
commit
|
commitdiff
|
tree
2021-07-25
Jim Procter
JAL-3848 reinstate Fetch DB References submenu
commit
|
commitdiff
|
tree
2021-07-25
Jim Procter
JAL-3848 update jalview core with slivka classes, example...
commit
|
commitdiff
|
tree
2021-07-25
Jim Procter
JAL-3848 add compbio and jalview to direct connection...
commit
|
commitdiff
|
tree
2021-07-25
Jim Procter
JAL-3853 - tweak test again - since failed a few commits...
commit
|
commitdiff
|
tree
2021-07-25
Jim Procter
JAL-3848 update swingJS runtime and transpiler to 3.3.1
commit
|
commitdiff
|
tree
2021-07-25
Jim Procter
Merge branch 'improvement/JAL-3848_slivka_0.8' of https...
commit
|
commitdiff
|
tree
2021-07-22
Jim Procter
JAL-3848 enable slivka services dialog in JalviewJS
commit
|
commitdiff
|
tree
2021-07-22
Jim Procter
JAL-3853 JAL-1870 toggle to enable/disable posterior...
commit
|
commitdiff
|
tree
2021-07-22
Jim Procter
JAL-3853 JAL-1870 patch tests for annotation colour...
commit
|
commitdiff
|
tree
2021-07-22
Jim Procter
JAL-1950 patch groovy bootstrap for importing hmmer3...
commit
|
commitdiff
|
tree
2021-07-22
Jim Procter
JAL-3853 patch sequence annotation report code and...
commit
|
commitdiff
|
tree
2021-07-22
Jim Procter
JAL-3848 ensure annotation from a service gets a calcId...
commit
|
commitdiff
|
tree
2021-07-22
Jim Procter
JAL-3848 don’t include sequence limits in sequence...
commit
|
commitdiff
|
tree
2021-07-22
Jim Procter
JAL-3848 - actually test the Slivka and JABAWS disorder...
commit
|
commitdiff
|
tree
2021-07-13
Jim Procter
JAL-3842 fix automatic what's new link for custom version...
commit
|
commitdiff
|
tree
2021-06-30
Jim Procter
JAL-3842 JAL-3746 (need to cherry pick to develop)...
commit
|
commitdiff
|
tree
2014-10-23
Jim Procter
Merge branch 'hotfix/JAL-1521' into Release_2_8_1_Branch
commit
|
commitdiff
|
tree
2014-10-23
Jim Procter
JAL-1521 patch is to remove xerces from classpath....
commit
|
commitdiff
|
tree
2014-10-23
Jim Procter
JAL-1521 test to check registry is returning sources
commit
|
commitdiff
|
tree
2014-10-23
Jim Procter
Merge branch 'Release_2_8_1_Branch'
commit
|
commitdiff
|
tree
2014-10-23
Jim Procter
patch fixes JAL-1558
commit
|
commitdiff
|
tree
2014-10-23
Jim Procter
Merge branch 'Release_2_8_1_Branch'
commit
|
commitdiff
|
tree
next