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2017-02-10	Jim Procter	Merge branch 'develop' into spike/matrix_annot	commit \| commitdiff \| tree
2017-02-09	Jim Procter	Merge branch 'features/JAL-2316' into develop	commit \| commitdiff \| tree
2017-02-09	Jim Procter	Merge branch 'develop' into features/JAL-2316	commit \| commitdiff \| tree
2017-02-08	Jim Procter	JAL-2316 tidying preferences help page	commit \| commitdiff \| tree
2017-02-08	Jim Procter	JAL-2316 tidied up documentation for Links tab	commit \| commitdiff \| tree
2017-02-08	Jim Procter	JAL-2366 updated default URL to www.jalview.org/services...	commit \| commitdiff \| tree
2017-02-07	Jim Procter	Merge branch 'features/JAL-2371collectionColourScheme...	commit \| commitdiff \| tree
2017-01-23	Jim Procter	JAL-2349 test for ContactMatrixI/ContactListI/ContactListPro...	commit \| commitdiff \| tree
2017-01-23	Jim Procter	JAL-2349 colour shade computation refactored to annotation...	commit \| commitdiff \| tree
2017-01-23	Jim Procter	JAL-2349 ContactMatrixI provided max/min getters	commit \| commitdiff \| tree
2017-01-23	Jim Procter	JAL-2349 Abstract logic for colouring and computing...	commit \| commitdiff \| tree
2017-01-22	Jim Procter	JAL-2349 bean holds mean and max for a range	commit \| commitdiff \| tree
2017-01-18	Jim Procter	JAL-2349 bean for getting max/min/avg for contact range	commit \| commitdiff \| tree
2017-01-17	Jim Procter	JAL-2349 rename ContactMatrixTest to SeqDistanceContactMatrix	commit \| commitdiff \| tree
2017-01-17	Jim Procter	JAL-2349 javadoc dummy contact matrix	commit \| commitdiff \| tree
2017-01-17	Jim Procter	JAL-2349 better names for getColourForRange parameters	commit \| commitdiff \| tree
2017-01-16	Jim Procter	JAL-2349 JAL-2382 Contact prediction/CASP-RR importer	commit \| commitdiff \| tree
2017-01-16	Jim Procter	JAL-2349 JAL-2382 contact matrix datamodel object	commit \| commitdiff \| tree
2017-01-16	Jim Procter	JAL-2349 JAL-2382 example contact prediction in RR...	commit \| commitdiff \| tree
2016-12-16	Jim Procter	JAL-2360 report line number when threshold cannot be...	commit \| commitdiff \| tree
2016-12-14	Jim Procter	Merge branch 'patch/JAL-2197_jpredforjnets' into develop	commit \| commitdiff \| tree
2016-12-12	Jim Procter	JAL-2349 fixed rendering method and switched to using...	commit \| commitdiff \| tree
2016-12-12	Jim Procter	JAL-2349 method to get display colour to represent...	commit \| commitdiff \| tree
2016-12-12	Jim Procter	JAL-2349 method to get contact intensity for given...	commit \| commitdiff \| tree
2016-12-05	Jim Procter	JAL-2349 contact map interface todo	commit \| commitdiff \| tree
2016-12-05	Jim Procter	JAL-2349 tidying	commit \| commitdiff \| tree
2016-12-04	Jim Procter	JAL-2348 make debug message reporting renderer used...	commit \| commitdiff \| tree
2016-12-04	Jim Procter	JAL-2349 contact renderer prototype (that doesn’t hang!)	commit \| commitdiff \| tree
2016-12-04	Jim Procter	JAL-2349 add dummy contact for both applet and application	commit \| commitdiff \| tree
2016-12-04	Jim Procter	JAL-2348 JAL-2349 make contact maps non-editable so...	commit \| commitdiff \| tree
2016-12-04	Jim Procter	JAL-2348 adjustable height for any non-label render...	commit \| commitdiff \| tree
2016-12-04	Jim Procter	JAL-2348 JAL-2349 refactored contact map renderer and...	commit \| commitdiff \| tree
2016-12-04	Jim Procter	JAL-2348 contact map renderer refactored from hacked...	commit \| commitdiff \| tree
2016-12-04	Jim Procter	JAL-2348 row renderer factory interface	commit \| commitdiff \| tree
2016-12-04	Jim Procter	JAL-2348 row renderer interface	commit \| commitdiff \| tree
2016-12-04	Jim Procter	JAL-2349 dummy contact matrix annotation row	commit \| commitdiff \| tree
2016-12-04	Jim Procter	JAL-2349 interfaces and logic for adding contact matrices...	commit \| commitdiff \| tree
2016-12-04	Jim Procter	JAL-2348 custom renderer type	commit \| commitdiff \| tree
2016-12-02	Jim Procter	basic hack to get (almost) equal height density plot	commit \| commitdiff \| tree
2016-11-30	Jim Procter	Merge branch 'features/JAL-2320_closeChimeraAction...	commit \| commitdiff \| tree
2016-11-29	Jim Procter	Merge branch 'documentation/JAL-2325_release2101' into...	commit \| commitdiff \| tree
2016-11-29	Jim Procter	JAL-2325 update release date in whatsNew	commit \| commitdiff \| tree
2016-11-29	Jim Procter	Merge branch 'develop' of http://source.jalview.org...	commit \| commitdiff \| tree
2016-11-29	Jim Procter	Merge branch 'documentation/JAL-2325_release2101' into...	commit \| commitdiff \| tree
2016-11-28	Jim Procter	JAL-2325 JAL-1878 update minimum versions of JRE for...	commit \| commitdiff \| tree
2016-11-28	Jim Procter	Merge branch 'documentation/JAL-2325_release2101' into...	commit \| commitdiff \| tree
2016-11-28	Jim Procter	JAL-2325 finalise release notes	commit \| commitdiff \| tree
2016-11-25	Jim Procter	Merge branch 'documentation/JAL-2325_release2101' into...	commit \| commitdiff \| tree
2016-11-25	Jim Procter	JAL-2325 JAL-2273 update vms bound to different installers	commit \| commitdiff \| tree
2016-11-25	Jim Procter	JAL-2325 more ignores on sourcedist build	commit \| commitdiff \| tree
2016-11-24	Jim Procter	Merge branch 'documentation/JAL-2325_release2101' into...	commit \| commitdiff \| tree
2016-11-24	Jim Procter	JAL-2325 exclude .class and .* files (install anywhere...	commit \| commitdiff \| tree
2016-11-24	Jim Procter	Merge branch 'documentation/JAL-2325_release2101' into...	commit \| commitdiff \| tree
2016-11-24	Jim Procter	JAL-2325 applied BSD license for chimera/StrucViz2...	commit \| commitdiff \| tree
2016-11-24	Jim Procter	JAL-2325 apply license to new source files	commit \| commitdiff \| tree
2016-11-24	Jim Procter	JAL-2325 update release date to next Tuesday	commit \| commitdiff \| tree
2016-11-24	Jim Procter	JAL-2325 tidy up release notes	commit \| commitdiff \| tree
2016-11-23	Jim Procter	JAL-2325 remove 2.10.0 what’s new	commit \| commitdiff \| tree
2016-11-23	Jim Procter	JAL-2325 latest release to 2.10	commit \| commitdiff \| tree
2016-11-23	Jim Procter	JAL-1738 Ctrl/Cmd/Alt modifiers and mention that B...	commit \| commitdiff \| tree
2016-11-23	Jim Procter	JAL-1738 hint about using the task switching key combination...	commit \| commitdiff \| tree
2016-11-23	Jim Procter	JAL-1738 mention Ctrl/Cmd/Alt modifiers and mention...	commit \| commitdiff \| tree
2016-11-23	Jim Procter	JAL-1738 mention Ctrl or Cmd for toggle behaviour in...	commit \| commitdiff \| tree
2016-11-23	Jim Procter	JAL-2325 updated what’s new for 2.10.1	commit \| commitdiff \| tree
2016-11-23	Jim Procter	JAL-2325 reword ‘tame tooltip’ JAL-1723 release note	commit \| commitdiff \| tree
2016-11-23	Jim Procter	JAL-2325 rejig authors and add Kira	commit \| commitdiff \| tree
2016-11-23	Jim Procter	JAL-2282 JAL-2325 added link to help text from release...	commit \| commitdiff \| tree
2016-11-23	Jim Procter	JAL-2325 updated what’s new for 2.10.1	commit \| commitdiff \| tree
2016-11-23	Jim Procter	Merge branch 'develop' of http://source.jalview.org...	commit \| commitdiff \| tree
2016-11-23	Jim Procter	JAL-2282 revised docs about warning message.	commit \| commitdiff \| tree
2016-11-23	Jim Procter	Merge branch 'documentation/JAL-2325_release2101' into...	commit \| commitdiff \| tree
2016-11-23	Jim Procter	JAL-2325 JAL-2332 release notes	commit \| commitdiff \| tree
2016-11-23	Jim Procter	Merge branch 'documentation/JAL-2325_release2101' into...	commit \| commitdiff \| tree
2016-11-23	Jim Procter	Merge branch 'bug/JAL-2323disulfideOverview' into develop	commit \| commitdiff \| tree
2016-11-23	Jim Procter	JAL-2325 moved disulphide/contact bug fixes (JAL-2323...	commit \| commitdiff \| tree
2016-11-23	Jim Procter	JAL-2325 release notes formatting	commit \| commitdiff \| tree
2016-11-23	Jim Procter	JAL-2325 release notes	commit \| commitdiff \| tree
2016-11-23	Jim Procter	Merge branch 'documentation/JAL-2325_release2101' into...	commit \| commitdiff \| tree
2016-11-23	Jim Procter	Merge branch 'develop' of http://source.jalview.org...	commit \| commitdiff \| tree
2016-11-23	Jim Procter	JAL-2325 release notes	commit \| commitdiff \| tree
2016-11-22	Jim Procter	JAL-2197 changed tooltip for Jnet annotation rows to...	commit \| commitdiff \| tree
2016-11-22	Jim Procter	Merge branch 'features/JAL-2177_update_jmol_to_14.6...	commit \| commitdiff \| tree
2016-11-22	Jim Procter	JAL-2325 update release date for 2.10.1	commit \| commitdiff \| tree
2016-11-22	Jim Procter	Merge branch 'develop' into documentation/JAL-2325_release2101	commit \| commitdiff \| tree
2016-11-22	Jim Procter	Merge branch 'develop' of http://source.jalview.org...	commit \| commitdiff \| tree
2016-11-22	Jim Procter	Merge branch 'features/JAL-1738_JAL-345_selectionfromhighlig...	commit \| commitdiff \| tree
2016-11-22	Jim Procter	Merge branch 'develop' of http://source.jalview.org...	commit \| commitdiff \| tree
2016-11-22	Jim Procter	JAL-1738 JAL-345 changed keystroke to ‘B’ (with modifiers...	commit \| commitdiff \| tree
2016-11-21	Jim Procter	JAL-2325 JAL-2118 2.10.0 patch in release note	commit \| commitdiff \| tree
2016-11-21	Jim Procter	JAL-2335 patched FeatureRendererModel.findFeaturesAtRes...	commit \| commitdiff \| tree
2016-11-21	Jim Procter	JAL-2335 failing test for FeatureRendererModel.findFeaturesA...	commit \| commitdiff \| tree
2016-11-21	Jim Procter	Merge branch 'documentation/JAL-2325_release2101' into...	commit \| commitdiff \| tree
2016-11-21	Jim Procter	Merge branch 'develop' into documentation/JAL-2325_release2101	commit \| commitdiff \| tree
2016-11-21	Jim Procter	JAL-2284 documentation for the new command-line option	commit \| commitdiff \| tree
2016-11-21	Jim Procter	JAL-2325 post-document JAL-2284 released in 2.10.0	commit \| commitdiff \| tree
2016-11-21	Jim Procter	JAL-2325 release notes for JAL-2317	commit \| commitdiff \| tree
2016-11-21	Jim Procter	JAL-1888 JAL-2325 release 2.9.0b1 notes updated post...	commit \| commitdiff \| tree
2016-11-21	Jim Procter	Merge branch 'documentation/JAL-2325_release2101' into...	commit \| commitdiff \| tree
2016-11-21	Jim Procter	JAL-1723 release notes and note in documentation about...	commit \| commitdiff \| tree
2016-11-21	Jim Procter	JAL-2325 update release 2.10.0 release notes for JAL...	commit \| commitdiff \| tree
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