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JAL-2089 update release date for 2.9.1
2016-05-30
Jim Procter
JAL-2089 update release date for 2.9.1
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2016-05-30
Jim Procter
JAL-1552 fix JAL-2122 resolve File->string before adding...
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2016-05-26
Jim Procter
JAL-2030 - add servlet-api-3.1.jar to installAnywhere...
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2016-05-26
Jim Procter
Merge branch 'develop' of http://source.jalview.org...
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2016-05-26
Jim Procter
JAL-2121 refactor todo
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2016-05-26
Jim Procter
JAL-2089 update developer doc
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2016-05-26
Jim Procter
Merge branch 'develop' of http://source.jalview.org...
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2016-05-26
Jim Procter
JAL-1400 JAL-2089 allow configurable signature algorithms
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2016-05-26
Jim Procter
JAL-1551 formatting
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2016-05-26
Jim Procter
JAL-1552 refactor shared dataflavor hander
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2016-05-26
Jim Procter
JAL-1552 extra debug logging for dataflavor if drop...
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2016-05-25
Jim Procter
JAL-1522 patch - try to pick best text dataflavor
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2016-05-06
Jim Procter
Merge branch 'features/JAL-192_scalerelativetoseq'...
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2016-05-06
Jim Procter
JAL-192 fix javadoc
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2016-05-06
Jim Procter
JAL-192 JAL-2099 unused variables
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2016-05-06
Jim Procter
JAL-1551 formatting
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2016-05-06
Jim Procter
JAL-192 JAL-2099 reuse refactored scale code for wrapped...
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2016-05-06
Jim Procter
JAL-192 JAL-2099 factored out calculation from rendering...
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2016-05-06
Jim Procter
JAL-192 JAL-2099 factored out calculation from rendering...
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2016-05-06
Jim Procter
JAL-192 JAL-2099 factored out calculation from rendering...
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2016-05-06
Jim Procter
JAL-2100 centre triangles on hidden column vertical...
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2016-05-06
Jim Procter
JAL-2100 optimisation
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2016-05-06
Jim Procter
JAL-2100 triangles shown below in jvdesktop unwrapped...
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2016-05-06
Jim Procter
JAL-192 patch off-by-one for pathological gap case
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2016-05-05
Jim Procter
JAL-192 patch for off-by one and pathological case...
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2016-05-04
Jim Procter
Revert "JAL-2074 removed xerces to explore wierdness"
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2016-05-03
Jim Procter
Merge branch 'r291_docs' into develop
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2016-05-02
Jim Procter
JAL-1270 move some Network tests to External (require...
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2016-05-02
Jim Procter
JAL-1270 capitalise test groups
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2016-05-02
Jim Procter
JAL-2089 JAL-1551 formatting
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2016-05-02
Jim Procter
JAL-2089 release 2.9.1 entry in release notes
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2016-04-29
Jim Procter
Merge branch 'features/JAL-192_scalerelativetoseq'...
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2016-04-29
Jim Procter
JAL-192 need visible and actual sequence limits for...
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2016-04-29
Jim Procter
JAL-192 fix bounds when no hidden regions, and when...
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2016-04-29
Jim Procter
JAL-192 scale origin relative to start of reference...
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2016-04-29
Jim Procter
JAL-966 JAL-1553 todo: remove UI components from Column...
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2016-04-29
Jim Procter
JAL-1551 formatting
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2016-04-29
Jim Procter
JAL-192 ‘efficiently’ locate visible bounds for a sequence...
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2016-04-29
Jim Procter
JAL-1551 formatting
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2016-04-27
Jim Procter
Merge branch 'features/JAL-192_scalerelativetoseq'...
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2016-04-27
Jim Procter
JAL-192 fix off-by-one for alignment ruler with no...
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2016-04-27
Jim Procter
Merge branch 'features/JAL-192_scalerelativetoseq'...
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2016-04-27
Jim Procter
JAL-192 show reference sequence position and residue...
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2016-04-27
Jim Procter
JAL-1366 JAL-2086 reinstate bolding of reference sequence
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2016-04-27
Jim Procter
JAL-2085 JAL-2086 fix hiddenRepSequence and new referenceSeq...
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2016-04-26
Jim Procter
JAL-2079 fix broken cherry-pick conflict merge
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2016-04-26
Jim Procter
Merge branch 'develop' of http://source.jalview.org...
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2016-04-26
Jim Procter
JAL-2079 update GPL header for new Xfam tests
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2016-04-26
Jim Procter
JAL-2079 use new service to retrieve Rfam Seed alignment
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2016-04-26
Jim Procter
JAL-2084 JAL-2079 removed RFAM(Full) from Xfam Network...
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2016-04-26
Jim Procter
JAL-2079 disable RFAM(Full) source until we can retrieve...
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2016-04-26
Jim Procter
JAL-2079 update URL for RFAM and PFAM sources
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2016-04-26
Jim Procter
JAL-2079 allow prefix+<XFAMID>+suffix type URL signature
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2016-04-26
Jim Procter
JAL-2077 reinstate JAL-1554 fix for left-then-right...
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2016-04-26
Jim Procter
JAL-2077 reinstate annotation label popup by handling...
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2016-04-26
gmungoc
JAL-1981 catch any exception when setting QuaQua look...
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2016-04-26
Jim Procter
Merge branch 'develop' into groovy/JAL-2074_upgradeto2.4.4
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2016-04-26
Jim Procter
Merge branch 'bug/JAL-2080_javaws_slow_291' into develop
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2016-04-26
Jim Procter
JAL-2080 removed all 'Class-Path' references in libs
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2016-04-26
Jim Procter
JAL-2080 removed classpath references to Xerces and...
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2016-04-26
Jim Procter
JAL-2080 mark jalview.jar as main jar resource
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2016-04-25
Jim Procter
JAL-2074 disable security manager at start up re: http...
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2016-04-25
Jim Procter
JAL-2074 removed xerces to explore wierdness
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2016-04-25
Jim Procter
JAL-2074 reinstate upgrade to groovy 2.8.4-indy
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2016-04-25
Jim Procter
JAL-2074 reinstate upgrade to groovy 2.8.4-indy
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2016-04-25
Jim Procter
JAL-2074 add the groovy 1.8.2 library back to classpath
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2016-04-25
Jim Procter
JAL-2074 backed out groovy upgrade - back to 1.8.2
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2016-04-25
Jim Procter
JAL-2074 groovy-all didn’t get added :q
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2016-04-25
Jim Procter
JAL-2074 switch to non-indy groovy to see if class...
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2016-04-24
Jim Procter
JAL-1551 JAL-2077 formatting
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2016-04-24
Jim Procter
JAL-2077 - reinstate popups on osx
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2016-04-24
Jim Procter
Merge branch 'JAL-2075_features_hiddeng' into develop
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2016-04-24
Jim Procter
JAL-2075 test showing hidden columns bug in feature...
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2016-04-24
Jim Procter
JAL-2075 refactor FeatureScoreModel to native testNG...
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2016-04-24
Jim Procter
JAL-2075 make GroovyConsole a singleton so tests requiring...
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2016-04-23
Jim Procter
JAL-2075 fix: use AlignmentView.getVisibleContigs and...
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2016-04-23
Jim Procter
JAL-2075 findPosition for SeqCigar (with test)
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2016-04-23
Jim Procter
JAL-2075 formatting
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2016-04-20
Jim Procter
Merge branch 'groovy/JAL-2074_upgradeto2.4.4' into...
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2016-04-20
Jim Procter
JAL-2074 updated URLs and removed 'how to get groovy...
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2016-04-20
Jim Procter
JAL-2074 updated groovy-all to 2.4.6-indy
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2016-04-20
Jim Procter
fix for JAL-2072
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2016-04-13
Jim Procter
JAL-2046 fix: patched SeqsetUtils so sequence features...
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2016-04-13
Jim Procter
JAL-2046 test to demonstrate feature duplication bug
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2016-04-13
Jim Procter
Merge branch 'bug/JAL-2046_ds_sharing_features_broken...
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2016-04-08
Jim Procter
Merge branch 'feature/JAL-2050_intronhidden' into develop
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2016-04-08
Jim Procter
JAL-2050 JAL-1722 new getSelectedRange() method to...
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2016-04-08
Jim Procter
JAL-2053 fix erratic hidden column marker display
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2016-04-08
Jim Procter
JAL-2053 JAL-1551 javadoc and simpler code
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2016-04-07
Jim Procter
JAL-1722 fix: don’t draw visible regions outside viewport...
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2016-04-05
Jim Procter
JAL-2046 RFC about cyclic dataset sequence references...
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2016-04-05
Jim Procter
JAL-2046 revise test for ambiguous case
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2016-04-05
Jim Procter
JAL-2046 ambiguous test for addSequenceFeature when...
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2016-04-05
Jim Procter
JAL-2046 RFC on addSequenceFeature behaviour after...
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2016-04-05
Jim Procter
JAL-2046 test behaviour of copy constructor in different...
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2016-04-05
Jim Procter
JAL-2046 add/delete SequenceFeature operate on dataset...
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2016-04-05
Jim Procter
JAL-2046 setSequenceFeature contract implementation...
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2016-04-05
Jim Procter
JAL-2046 explicit contract for get/set SequenceFeatures...
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2016-04-05
Jim Procter
JAL-2046 remove javadoc
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2016-04-05
Jim Procter
JAL-2046 simpler deriveSequence - promote to dataset...
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