git://source.jalview.org
/
jalview.git
/ search
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
|
commitdiff
|
tree
first
⋅
prev
⋅
next
JAL-1264 reinstate Show annotations menu item
2014-11-17
Jim Procter
JAL-1587 propagate JPred annotation from legacy jpred...
commit
|
commitdiff
|
tree
2014-11-17
Jim Procter
formatting
commit
|
commitdiff
|
tree
2014-11-17
Jim Procter
JAL-1587 JAL-407 instrument setDataset to add dataset...
commit
|
commitdiff
|
tree
2014-11-17
Jim Procter
Merge branch 'r282_portforward' into develop
commit
|
commitdiff
|
tree
2014-11-17
Jim Procter
Merge branch 'Release_2_8_2_Branch' of https://source...
commit
|
commitdiff
|
tree
2014-11-17
Jim Procter
Merge branch 'r282_portforward' into Release_2_8_2_Branch
commit
|
commitdiff
|
tree
2014-11-17
Jim Procter
JAL-1469 help documentation
commit
|
commitdiff
|
tree
2014-11-17
Jim Procter
JAL-1469 help documentation
commit
|
commitdiff
|
tree
2014-11-17
Jim Procter
Merge branch 'mrg_dev_282' into Release_2_8_2_Branch
commit
|
commitdiff
|
tree
2014-11-17
Jim Procter
Merge branch 'Release_2_8_2_Branch' into mrg_dev_282
commit
|
commitdiff
|
tree
2014-11-17
Jim Procter
Merge branch 'mrg_dev_282' into Release_2_8_2_Branch
commit
|
commitdiff
|
tree
2014-11-17
Jim Procter
Merge commit '1d9e1c80fb6c0e32313a976ae0065fd32639f2bc...
commit
|
commitdiff
|
tree
2014-11-14
Jim Procter
Merge branch 'develop' into JAL-1483_featureBasedTreeCalc
commit
|
commitdiff
|
tree
2014-11-13
Jim Procter
Merge branch 'features/JAL-1469_svg-output-for-figure...
commit
|
commitdiff
|
tree
2014-11-13
Jim Procter
Merge branch 'features/JAL-1469_svg-output-for-figure...
commit
|
commitdiff
|
tree
2014-11-13
Jim Procter
JAL-1469 added jfreesvg to desktop dependencies
commit
|
commitdiff
|
tree
2014-11-12
Jim Procter
Merge branch 'features/JAL-1541_BioJsMSAViewer-export...
commit
|
commitdiff
|
tree
2014-11-12
Jim Procter
JAL-1541 exclude all unnecessary jalview.io classes...
commit
|
commitdiff
|
tree
2014-11-12
Jim Procter
Merge branch 'features/JAL-1541_BioJsMSAViewer-export...
commit
|
commitdiff
|
tree
2014-11-12
Jim Procter
Merge branch 'develop' into features/JAL-1541_BioJsMSAViewer...
commit
|
commitdiff
|
tree
2014-11-12
Jim Procter
Merge branch 'features/typed_annotations_calcId' into...
commit
|
commitdiff
|
tree
2014-11-12
Jim Procter
Merge branch 'features/typed_annotations_calcId' into...
commit
|
commitdiff
|
tree
2014-11-12
Jim Procter
JAL-974 fix class contamination for jalviewLite build
commit
|
commitdiff
|
tree
2014-11-12
Jim Procter
Merge branch 'features/typed_annotations_calcId' into...
commit
|
commitdiff
|
tree
2014-11-12
Jim Procter
Merge branch 'features/typed_annotations_calcId' into...
commit
|
commitdiff
|
tree
2014-11-12
Jim Procter
javadoc
commit
|
commitdiff
|
tree
2014-11-12
Jim Procter
JAL-674 use the getMapping/transfer to transfer annotation...
commit
|
commitdiff
|
tree
2014-11-12
Jim Procter
JAL-674 patch broken getMapping function
commit
|
commitdiff
|
tree
2014-11-12
Jim Procter
JAL-674 switch from .transfer to .liftOver for transfer...
commit
|
commitdiff
|
tree
2014-11-12
Jim Procter
JAL-674 note about broken .transfer method (expect...
commit
|
commitdiff
|
tree
2014-11-12
Jim Procter
JAL-674 javadoc
commit
|
commitdiff
|
tree
2014-11-12
Jim Procter
JAL-674 new tests and deprecated tests for PDB mapping...
commit
|
commitdiff
|
tree
2014-11-12
Jim Procter
JAL-1541 added Jsoup to the InstallAnywhere config
commit
|
commitdiff
|
tree
2014-11-12
Jim Procter
JAL-1541 added Jsoup to the InstallAnywhere config
commit
|
commitdiff
|
tree
2014-11-12
Jim Procter
JAL-1541 added Jsoup to the InstallAnywhere config
commit
|
commitdiff
|
tree
2014-11-12
Jim Procter
JAL-1541 added Jsoup to the InstallAnywhere config
commit
|
commitdiff
|
tree
2014-11-06
Jim Procter
Merge branch 'features/JAL-1152annotationSorting' into...
commit
|
commitdiff
|
tree
2014-11-06
Jim Procter
Merge branch 'features/JAL-1541_BioJsMSAViewer-export...
commit
|
commitdiff
|
tree
2014-11-04
Jim Procter
JAL-1213 normalise sequence extracted from Jmol in...
commit
|
commitdiff
|
tree
2014-11-04
Jim Procter
JAL-1213 test to ensure JMol extracted sequences are...
commit
|
commitdiff
|
tree
2014-11-03
Jim Procter
Merge branch 'develop' into features/JAL-1152annotationSorting
commit
|
commitdiff
|
tree
2014-11-03
Jim Procter
Merge branch 'bug/JAL-1250_redundance-removal' into...
commit
|
commitdiff
|
tree
2014-11-03
Jim Procter
Merge branch 'develop' into features/JAL-1152annotationSorting
commit
|
commitdiff
|
tree
2014-11-03
Jim Procter
Merge branch 'features/ssFromPDBEntry' into develop
commit
|
commitdiff
|
tree
2014-11-03
Jim Procter
JAL-795 JAL-674 tweaked logic to avoid black annotation...
commit
|
commitdiff
|
tree
2014-11-03
Jim Procter
fix for JAL-1579 create threshold object for annotation...
commit
|
commitdiff
|
tree
2014-11-03
Jim Procter
JAL-1578 test property accessors/copy constructor
commit
|
commitdiff
|
tree
2014-11-03
Jim Procter
JAL-1578 JAL-674 store/restore alignment annotation...
commit
|
commitdiff
|
tree
2014-11-03
Jim Procter
JAL-1578 formatting and imports
commit
|
commitdiff
|
tree
2014-11-03
Jim Procter
JAL-674 peptide structure input so test is not dependent...
commit
|
commitdiff
|
tree
2014-11-03
Jim Procter
JAL-1551 formatting
commit
|
commitdiff
|
tree
2014-11-03
Jim Procter
JAL-674 JAL-961 JAL-1578 accessors and copy constructor...
commit
|
commitdiff
|
tree
2014-11-03
Jim Procter
javadoc
commit
|
commitdiff
|
tree
2014-10-31
Jim Procter
JAL-674 JAL-961 pass row reference to handler to check...
commit
|
commitdiff
|
tree
2014-10-31
Jim Procter
JAL-674 JAL-961 properties to stash additional information...
commit
|
commitdiff
|
tree
2014-10-30
Jim Procter
Merge branch 'develop' into features/ssFromPDBEntry
commit
|
commitdiff
|
tree
2014-10-30
Jim Procter
JAL-674 hang on to sequences created by secondary parsiing...
commit
|
commitdiff
|
tree
2014-10-30
Jim Procter
JAL-674 count number of annotation transferred in test
commit
|
commitdiff
|
tree
2014-10-30
Jim Procter
JAL-674 propagate annotation onto mapped sequence and...
commit
|
commitdiff
|
tree
2014-10-30
Jim Procter
JAL-674 register PDB IDs when ever they are resolved...
commit
|
commitdiff
|
tree
2014-10-30
Jim Procter
JAL-674 use PDB ID<>File registry to look up correct...
commit
|
commitdiff
|
tree
2014-10-30
Jim Procter
JAL-674 return original and replacement sequences and...
commit
|
commitdiff
|
tree
2014-10-30
Jim Procter
JAL-674 helpful javadoc for remap method
commit
|
commitdiff
|
tree
2014-10-30
Jim Procter
JAL-674 flag and proxy method to distinguish setMapping...
commit
|
commitdiff
|
tree
2014-10-30
Jim Procter
JAL-674 map on StructureSelectionManager to record...
commit
|
commitdiff
|
tree
2014-10-30
Jim Procter
patch for JAL-795 - use base secondary structure colour...
commit
|
commitdiff
|
tree
2014-10-30
Jim Procter
JAL-674 patch test to verify presence of annotation...
commit
|
commitdiff
|
tree
2014-10-30
Jim Procter
JAL-1551 format and tidy
commit
|
commitdiff
|
tree
2014-10-29
Jim Procter
JAL-1264 JAL-674 test to exercise the AlignmentAnnotation...
commit
|
commitdiff
|
tree
2014-10-29
Jim Procter
JAL-1264 JAL-674 method to copy annotation on structure...
commit
|
commitdiff
|
tree
2014-10-29
Jim Procter
JAL-674 JAL-1264 remap method to allow annotation positions...
commit
|
commitdiff
|
tree
2014-10-27
Jim Procter
Merge branch 'develop' into Release_2_8_2_Branch
commit
|
commitdiff
|
tree
2014-10-27
Jim Procter
Merge branch 'Release_2_8_2_Branch' into merge_r282_dev
commit
|
commitdiff
|
tree
2014-10-23
Jim Procter
Merge branch 'hotfix/JAL-1521' into Release_2_8_2_Branch
commit
|
commitdiff
|
tree
2014-10-23
Jim Procter
Merge branch 'hotfix/JAL-1521' into develop
commit
|
commitdiff
|
tree
2014-10-23
unknown
JAL-1521 updated xerces to 2.11 along with xml-apis
commit
|
commitdiff
|
tree
2014-09-12
j.procter@dundee...
Merge branch 'Release_2_8_2_Branch' of https://source...
commit
|
commitdiff
|
tree
2014-09-12
j.procter@dundee...
Merge branch 'bug/JAL-1486_flatfile' into develop
commit
|
commitdiff
|
tree
2014-09-12
j.procter@dundee...
Merge branch 'bug/JAL-1486_flatfile' into Release_2_8_2_Branch
commit
|
commitdiff
|
tree
2014-09-12
j.procter@dundee...
JAL-1486 JAL-1543 pushed alignment viewport->view-...
commit
|
commitdiff
|
tree
2014-09-12
j.procter@dundee...
formatting and organise imports
commit
|
commitdiff
|
tree
2014-09-12
j.procter@dundee...
JAL-1486 fix: pass selected region to jalview.io via...
commit
|
commitdiff
|
tree
2014-09-12
j.procter@dundee...
JAL-1199 add stockholm output to list of AppletFormatAdapter...
commit
|
commitdiff
|
tree
2014-09-12
j.procter@dundee...
JAL-1486 JAL-535 refactor code for trimming alignment...
commit
|
commitdiff
|
tree
2014-09-12
j.procter@dundee...
JAL-535 tidy interface definition and documentation
commit
|
commitdiff
|
tree
2014-09-12
j.procter@dundee...
JAL-1516 Annotation row score output script for jalview...
commit
|
commitdiff
|
tree
2014-08-08
j.procter@dundee...
formatting/typo
commit
|
commitdiff
|
tree
2014-08-08
j.procter@dundee...
JAL-1483 reformatting and use new feature renderer...
commit
|
commitdiff
|
tree
2014-08-08
j.procter@dundee...
JAL-1482 feature renderer and manipulation code refactored...
commit
|
commitdiff
|
tree
2014-08-08
j.procter@dundee...
JAL-1483 move show sequence feature and sequence feature...
commit
|
commitdiff
|
tree
2014-08-08
j.procter@dundee...
tidy imports
commit
|
commitdiff
|
tree
2014-08-08
j.procter@dundee...
JAL-1483 sort by feature score/density made first class...
commit
|
commitdiff
|
tree
2014-08-08
j.procter@dundee...
JAL-1483 JAL-1104 method to pass operations for undo...
commit
|
commitdiff
|
tree
2014-08-08
j.procter@dundee...
JAL-1483 abstract feature renderer model holds render...
commit
|
commitdiff
|
tree
2014-08-08
j.procter@dundee...
JAL-1483 feature renderer settings for store/exchange...
commit
|
commitdiff
|
tree
2014-08-08
j.procter@dundee...
JAL-1483 model and api for feature display list on...
commit
|
commitdiff
|
tree
2014-08-08
j.procter@dundee...
JAL-1482 nascent feature settings model and controller...
commit
|
commitdiff
|
tree
2014-07-22
j.procter@dundee...
Merge branch 'features/JAL-1333' into develop
commit
|
commitdiff
|
tree
2014-07-22
j.procter@dundee...
Merge branch 'features/JAL-1333' into Release_2_8_2_Branch
commit
|
commitdiff
|
tree
2014-07-22
j.procter@dundee...
JAL-1333 fix imports
commit
|
commitdiff
|
tree
next