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2005-11-17	amwaterhouse	Remove system.out	commit \| commitdiff \| tree
2005-11-16	amwaterhouse	Highlight doesnt use offset	commit \| commitdiff \| tree
2005-11-16	amwaterhouse	Don't initialise a char in findIndex	commit \| commitdiff \| tree
2005-11-16	amwaterhouse	Don't set chain colours in hashtable	commit \| commitdiff \| tree
2005-11-16	amwaterhouse	Highlight from alignment	commit \| commitdiff \| tree
2005-11-16	amwaterhouse	No more myAtom, Highlight from alignment	commit \| commitdiff \| tree
2005-11-16	amwaterhouse	no need for myAtom	commit \| commitdiff \| tree
2005-11-16	amwaterhouse	Parsing updates	commit \| commitdiff \| tree
2005-11-16	amwaterhouse	Not used	commit \| commitdiff \| tree
2005-11-15	amwaterhouse	Keep all public methods	commit \| commitdiff \| tree
2005-11-15	amwaterhouse	No radio buttons in applet	commit \| commitdiff \| tree
2005-11-15	amwaterhouse	Dont use this yet	commit \| commitdiff \| tree
2005-11-15	amwaterhouse	Dont use myGraphics	commit \| commitdiff \| tree
2005-11-15	amwaterhouse	Removed	commit \| commitdiff \| tree
2005-11-15	amwaterhouse	Graphical bits moved into files to save jar size	commit \| commitdiff \| tree
2005-11-15	amwaterhouse	Removed to reduce jar size	commit \| commitdiff \| tree
2005-11-14	amwaterhouse	Modifications for Applet PDB viewer	commit \| commitdiff \| tree
2005-11-14	amwaterhouse	Add getAlignment function	commit \| commitdiff \| tree
2005-11-14	amwaterhouse	Modifications for Applet PDB	commit \| commitdiff \| tree
2005-11-14	amwaterhouse	Fix bug where all chains are called A	commit \| commitdiff \| tree
2005-11-14	amwaterhouse	Applet PDB viewer	commit \| commitdiff \| tree
2005-11-14	amwaterhouse	Catch exceptions	commit \| commitdiff \| tree
2005-11-14	amwaterhouse	Use shortname	commit \| commitdiff \| tree
2005-11-14	amwaterhouse	getShortName	commit \| commitdiff \| tree
2005-11-14	amwaterhouse	findByShortName	commit \| commitdiff \| tree
2005-11-14	amwaterhouse	Dont add sequence group at the moment	commit \| commitdiff \| tree
2005-11-11	amwaterhouse	No new PDBViewer	commit \| commitdiff \| tree
2005-11-11	amwaterhouse	Last chance, is the sequence without id?	commit \| commitdiff \| tree
2005-11-11	amwaterhouse	SequenceFetcher new class	commit \| commitdiff \| tree
2005-11-11	amwaterhouse	AddPdbEntry added	commit \| commitdiff \| tree
2005-11-11	amwaterhouse	PNG and EPS in ImageMaker	commit \| commitdiff \| tree
2005-11-10	amwaterhouse	Allow featuresettings to be enabled on load	commit \| commitdiff \| tree
2005-11-10	amwaterhouse	Add mousewheel listener	commit \| commitdiff \| tree
2005-11-10	amwaterhouse	REmove system.out	commit \| commitdiff \| tree
2005-11-10	amwaterhouse	AlignSeq takes printstream as arg	commit \| commitdiff \| tree
2005-11-10	amwaterhouse	Add mapping details to stringbuffer	commit \| commitdiff \| tree
2005-11-10	amwaterhouse	OnlyAddPDBEntries	commit \| commitdiff \| tree
2005-11-10	amwaterhouse	Set PDBViewer	commit \| commitdiff \| tree
2005-11-10	amwaterhouse	Use Antialiasing	commit \| commitdiff \| tree
2005-11-10	amwaterhouse	PDB implementation updated	commit \| commitdiff \| tree
2005-11-10	amwaterhouse	If selectionGroup is null, return	commit \| commitdiff \| tree
2005-11-10	amwaterhouse	Return accurate RGB for transparent residues	commit \| commitdiff \| tree
2005-11-10	amwaterhouse	Make cancelled public variable	commit \| commitdiff \| tree
2005-11-10	amwaterhouse	getDbRef	commit \| commitdiff \| tree
2005-11-10	amwaterhouse	Get and set PDBEntrys	commit \| commitdiff \| tree
2005-11-10	amwaterhouse	PDB is now PDBEntry	commit \| commitdiff \| tree
2005-11-10	amwaterhouse	Use StringBUffer instead of String	commit \| commitdiff \| tree
2005-11-10	amwaterhouse	Colour PDB by sequence	commit \| commitdiff \| tree
2005-11-10	amwaterhouse	PDM mapping	commit \| commitdiff \| tree
2005-11-10	amwaterhouse	Rot Canvas replaced with PDBViewer	commit \| commitdiff \| tree
2005-11-10	amwaterhouse	Mapping to PDB added	commit \| commitdiff \| tree
2005-11-08	amwaterhouse	jalview mapping	commit \| commitdiff \| tree
2005-11-08	amwaterhouse	Preliminary storeJalview	commit \| commitdiff \| tree
2005-11-08	amwaterhouse	getVersion added for Castor mapping	commit \| commitdiff \| tree
2005-11-04	amwaterhouse	Id parsing moved to Sequence	commit \| commitdiff \| tree
2005-11-04	amwaterhouse	REmove system.out	commit \| commitdiff \| tree
2005-11-04	amwaterhouse	Show full id	commit \| commitdiff \| tree
2005-11-04	amwaterhouse	Display full id in trees	commit \| commitdiff \| tree
2005-11-04	amwaterhouse	Use visible id for sorting	commit \| commitdiff \| tree
2005-11-02	amwaterhouse	Load and save Feature Colour Settings	commit \| commitdiff \| tree
2005-11-02	amwaterhouse	Java 1.5 bug note	commit \| commitdiff \| tree
2005-11-02	amwaterhouse	Allow residue prefix to dataset	commit \| commitdiff \| tree
2005-11-02	amwaterhouse	Only add first Id to suggestedIds	commit \| commitdiff \| tree
2005-11-02	amwaterhouse	Add jvsuffix and dbref to menu	commit \| commitdiff \| tree
2005-11-02	amwaterhouse	2CdbPrefix true by default	commit \| commitdiff \| tree
2005-11-02	amwaterhouse	Output jvsuffix, dbref	commit \| commitdiff \| tree
2005-11-01	amwaterhouse	Inform user about visual alignment, not dataset updates	commit \| commitdiff \| tree
2005-11-01	amwaterhouse	Wrap long description in table	commit \| commitdiff \| tree
2005-11-01	amwaterhouse	Label changes	commit \| commitdiff \| tree
2005-11-01	amwaterhouse	Show JVSuffix	commit \| commitdiff \| tree
2005-11-01	amwaterhouse	disulfide bond exceptions	commit \| commitdiff \| tree
2005-11-01	amwaterhouse	New schema, new objects	commit \| commitdiff \| tree
2005-11-01	amwaterhouse	Adjust seq limits for visual and dataset sequences	commit \| commitdiff \| tree
2005-10-31	amwaterhouse	dbPrefix and jvsuffix added	commit \| commitdiff \| tree
2005-10-31	amwaterhouse	getDisplayId changed	commit \| commitdiff \| tree
2005-10-31	amwaterhouse	jalviewClipboard added	commit \| commitdiff \| tree
2005-10-31	amwaterhouse	Display only selected features	commit \| commitdiff \| tree
2005-10-31	amwaterhouse	DBPrefix and JVSuffix added	commit \| commitdiff \| tree
2005-10-31	amwaterhouse	FeatureRenderer doenst use groups	commit \| commitdiff \| tree
2005-10-31	amwaterhouse	Sequence.getDatasetSequence().getFeatures	commit \| commitdiff \| tree
2005-10-31	amwaterhouse	Use fontmetrics to tidy up display	commit \| commitdiff \| tree
2005-10-31	amwaterhouse	Prompt before blasting	commit \| commitdiff \| tree
2005-10-31	amwaterhouse	equalsIgnoreCase CLUSTAL	commit \| commitdiff \| tree
2005-10-31	amwaterhouse	Catch numberformatexceptions	commit \| commitdiff \| tree
2005-10-31	amwaterhouse	Accession and name unbounded	commit \| commitdiff \| tree
2005-10-31	amwaterhouse	DisplayId can be dbref and or jvsuffix	commit \| commitdiff \| tree
2005-10-31	amwaterhouse	Find by displayid not used	commit \| commitdiff \| tree
2005-10-31	amwaterhouse	name and accession are unbounded	commit \| commitdiff \| tree
2005-10-27	amwaterhouse	Castor generated	commit \| commitdiff \| tree
2005-10-27	amwaterhouse	Disable featuresettings	commit \| commitdiff \| tree
2005-10-27	amwaterhouse	Moved vector features	commit \| commitdiff \| tree
2005-10-27	amwaterhouse	Allow old style groups file	commit \| commitdiff \| tree
2005-10-27	amwaterhouse	Remove system.out	commit \| commitdiff \| tree
2005-10-27	amwaterhouse	Remove static refs to applet	commit \| commitdiff \| tree
2005-10-27	amwaterhouse	MyGraphics added to enhance applet GUI	commit \| commitdiff \| tree
2005-10-26	amwaterhouse	Groups file is now feature file	commit \| commitdiff \| tree
2005-10-26	amwaterhouse	Parsing updates	commit \| commitdiff \| tree
2005-10-26	amwaterhouse	vamsasDemo new branch	commit \| commitdiff \| tree
2005-10-26	amwaterhouse	Used for sequence feature mapping	commit \| commitdiff \| tree
2005-10-07	amwaterhouse	comma separated rgb values	commit \| commitdiff \| tree
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