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JAL-4131 Replace usages of requireNonNullElse
2023-02-17 Mateusz WarownyJAL-4131 Replace usages of requireNonNullElse
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2023-02-16 Mateusz WarownyJAL-4130 Workaround the j2s issue with final variables...
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2023-02-06 Mateusz WarownyJAL-3878 Change Cache.log calls to Console
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2023-02-06 Mateusz WarownyMerge branch 'JAL-3878_ws-overhaul-3' into mmw/Release_2_12_...
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2022-12-12 Mateusz WarownyWIP
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2022-04-26 Mateusz WarownyJAL-3878 Implement RNA Sec. Str. Pred. discovery for...
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2022-04-25 Mateusz WarownyJAL-3878 log full worker repr in AlignCalcManager
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2022-04-25 Mateusz WarownyJAL-3878 Fix edit settings dialog prompting to discard...
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2022-04-11 Mateusz WarownyJAL-3878 Use slivka client's URL when building web...
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2022-04-11 Mateusz WarownyJAL-3878 Add conservation service discovery
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2022-04-11 Mateusz WarownyJAL-3878 Build interactive services menu
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2022-04-11 Mateusz WarownyJAL-3878 Implement prot. seq. an. discovery for slivka.
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2022-04-11 Mateusz WarownyJAL-3878 Implement gui elements for annotation servicces
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2022-04-11 Mateusz WarownyJAL-3878 Create SlivkaAnnotationWSClient
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2022-04-11 Mateusz WarownyJAL-3878 Add full name getter to ActionI
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2022-04-11 Mateusz WarownyJAL-3878 Log status changes in annotation task
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2022-04-11 Mateusz WarownyJAL-3878 Allow null value for action name
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2022-04-07 Mateusz WarownyJAL-3878 Add action and task for annotation services
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2022-04-05 Mateusz WarownyJAL-3878 Introduce IProgressIndicator#addProgressBar
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2022-04-05 Mateusz WarownyJAL-3878 Fix method name to fireTaskRestarted
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2022-04-05 Mateusz WarownyJAL-3878 Add char[] constructor to Sequence
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2022-04-05 Mateusz WarownyJAL-3878 Make BaseJob setters public so they can be...
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2022-04-05 Mateusz WarownyJAL-3878 Add fullName to BaseAction class which combines...
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2022-04-05 Mateusz WarownyJAL-3878 Move status precedence list to JobStatus class
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2022-04-05 Mateusz WarownyJAL-3878 Add uid to WS Tasks
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2022-03-28 Mateusz WarownyJAL-3878 Patch preferences window to use new discoverer.
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2022-03-28 Mateusz WarownyJAL-3878 Fix discoverer being stuck on BEGIN state...
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2022-03-25 Mateusz WarownyJAL-3878 Add slivka discoverer and menu to AlignFrame
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2022-03-25 Mateusz WarownyJAL-3878 Change align frame added to desktop to correct one
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2022-03-25 Mateusz WarownyJAL-3878 Wrap infoPanel updates with SwingUtilities...
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2022-03-25 Mateusz WarownyJAL-3878 Fix re-alignment-capable services detection.
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2022-03-25 Mateusz WarownyJAL-3878 Clear services list on reload.
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2022-03-25 Mateusz WarownyJAL-3878 Fix task status precedence calculation
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2022-03-25 Mateusz WarownyJAL-3878 Fix NullPointerExceptions caused by nulls...
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2022-03-25 Mateusz WarownyJAL3878 Implement slivka service discoverer
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2022-03-25 Mateusz WarownyJAL-3878 Move action name initialization to its own...
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2022-03-25 Mateusz WarownyJAL-3878 Create ws2 client for slivka services
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2022-03-25 Mateusz WarownyJAL-3878 Add builders to each service parameter class
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2022-03-24 Mateusz WarownyJAL-3878 Create service agnostic param datastore and set
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2022-03-23 Mateusz WarownyJAL-3878 Create beans for un/marshalling service parameters
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2022-03-18 Mateusz WarownyJAL-3878 Create abstract ws discoverer providing common...
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2022-03-15 Mateusz WarownyJAL-3878 Connect alignment services with gui
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2022-03-14 Mateusz WarownyJAL-3878 Move array index search to ArrayUtils
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2022-03-11 Mateusz WarownyJAL-3878 Create web service menu manager.
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2022-03-11 Mateusz WarownyJAL-3878 Add hasPresets and hasParameters utility methods...
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2022-03-09 Mateusz WarownyJAL-3878 Add WebServiceProviderI - a view of services.
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2022-03-09 Mateusz WarownyJAL-3878 Improve performance of gap sequence construction.
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2022-03-08 Mateusz WarownyJAL-3878 Add web service reference to actions.
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2022-03-04 Mateusz WarownyJAL-3878 Change visibility of WebService methods to...
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2022-03-03 Mateusz WarownyJAL-3878 Create alignment service "backend" classes
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2022-03-03 Mateusz WarownyJAL-3878 Remove unused JobStatus methods
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2022-03-03 Mateusz WarownyJAL-3878 Create abstract base classes for non-interactive...
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2022-03-02 Mateusz WarownyJAL-3878 Fix typo in method name (getAlignemnt)
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2022-03-02 Mateusz WarownyJAL-3878 Add serviceExecutor to AlignmentViewport.
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2022-02-28 Mateusz WarownyJAL-3878 Separate server job handle from task's sub...
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2022-02-18 Mateusz WarownyJAL-3878 Provide javadoc for WebServiceClientI interface
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2022-02-18 Mateusz WarownyJAL-3878 Create skeleton for alignment service action
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2022-02-18 Mateusz WarownyJAL-3878 Create abstract base class for actions.
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2022-02-18 Mateusz WarownyJAL-3878 Fix typo in getTooltip method name
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2022-02-18 Mateusz WarownyJAL-3878 Move WebServiceJob class to jalview.ws2.api...
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2022-02-18 Mateusz WarownyJAL-3878 Move CredentialType class to jalview.ws2.api...
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2022-02-18 Mateusz WarownyJAL-3878 Create TaskEventListener interface.
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2022-02-18 Mateusz WarownyJAL-3878 Create action and task interfaces.
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2022-02-17 Mateusz WarownyJAL-3878 Add interactive flag to WebService class
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2022-02-17 Mateusz WarownyJAL-3878 Create web service class - container for service...
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2022-02-17 Mateusz WarownyJAL-3878 Add WebServiceJob class.
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2022-02-16 Mateusz WarownyJAL-3878 Add interfaces for classes dealing with server...
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2022-02-15 Mateusz WarownyJAL-3878 Add universal id generator to MathUtils.
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2021-12-23 Mateusz WarownyMerge branch 'JAL-3927_ws_preferences_dialog_fix' into...
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2021-12-23 Mateusz WarownyMerge branch 'update/JAL-3066_updated_testng' into...
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2021-11-25 Mateusz WarownyJAL-3927 Make url checks asynchronous in preferences...
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2021-11-23 Mateusz WarownyJAL-3066 Fix ambiguous assertEquals casting values...
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2021-11-18 Mateusz WarownyJAL-3066 Remove redundant throws declaration from SlivkaPara...
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2021-11-16 Mateusz WarownyMerge branch 'JAL-3866_RNAalifold-slivka-client' into...
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2021-11-16 Mateusz WarownyMerge branch 'alpha/JAL-3899_deuniquify_refactor' into...
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2021-10-07 Mateusz WarownyJAL-3899 Replace prints with logger messages.
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2021-10-06 Mateusz WarownyJAL-3899 Update usages of uniquify and deuniquify.
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2021-10-06 Mateusz WarownyJAL-3899 Refactor sequence de/uniquification.
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2021-09-02 Mateusz WarownyAdd RNAalifold service instance to slivka web services.
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2021-07-29 Mateusz WarownyMerge branch 'improvement/JAL-3848_slivka_0.8' into...
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2021-07-27 Mateusz WarownyMerge branch 'bug/JAL-3807_jpred-with-slivka' into...
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2021-07-27 Mateusz WarownyMerge commit '0b438477b16470202bddfecb54e0587036b37202...
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2021-07-27 Mateusz WarownyJAL-3066 Fix NullPointerException thrown when showing...
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2021-07-23 Mateusz WarownyJAL-3848 Update slivka client javajs library.
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2021-07-21 Mateusz WarownyJAL-3848 print exception for failed align jobs
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2021-07-21 Mateusz WarownyJAL-3848 add latest slivka-client fixes.
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2021-07-09 Mateusz WarownyMerge branch 'jpred-fix' into bug/JAL-3807_jpred-with...
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2021-07-09 Mateusz WarownyJAL-3807 Fix SlivkaWSInstance not fetching alignments.
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2021-07-09 Mateusz WarownyMerge branch 'bug/JAL-3849_aacon-parameters' into improvemen...
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2021-07-09 Mateusz WarownyJAL-3690 Remove references to old AlignCalcManager.
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2021-07-08 Mateusz WarownyJAL-3848 SlivkaParamSet: reformat code and add service...
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2021-07-08 Mateusz WarownyJAL-3848 Update slivka client library.
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2021-07-08 Mateusz WarownyJAL-3849 Remove join() which blocked the ui.
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2021-05-12 Mateusz WarownyRevert "Merge branch 'bug/JAL-3807_jpred-with-slivka...
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2021-03-04 Mateusz WarownyJAL-3066 Fix NullPointerException thrown when showing...
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2021-02-22 Mateusz WarownyMerge branch 'bug/JAL-3807_jpred-with-slivka' into...
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2021-02-22 Mateusz WarownyJAL-3807 - Add single sequence capabilities to jws2...
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2021-02-22 Mateusz WarownyJAL-3807 - Move new JPred client to the jws2 package.
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2021-02-22 Mateusz WarownyJAL-3807 - Re-implement results processing.
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2021-02-22 MateuszJAL-3807 JPred can now successfully submit and track...
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