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JAL-3748 pass a list to findAlignedSequence to return mapping that relates CDS and...
2019-01-21
gmungoc
JAL-3187 draw complement features on alignment / structure
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2019-01-21
gmungoc
JAL-3187 unit tests updated and errors caught
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2019-01-21
gmungoc
JAL-3187 findFeaturesAtResidue answer in render order...
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2019-01-21
gmungoc
JAL-3187 repaint a 'following' complementary view on...
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2019-01-21
gmungoc
JAL-3187 (hacked up) show complement features on structure...
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2019-01-18
gmungoc
JAL-3187 basic first version for tooltips only (rendering...
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2019-01-18
gmungoc
JAL-3143 'id' not 'ID' attribute drives generation...
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2019-01-14
gmungoc
JAL-3186 remove Variable Colour from popup menu
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2019-01-14
gmungoc
JAL-3186 remove duplicate message keys
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2019-01-14
gmungoc
JAL-2069 wider dialog so all fields show!
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2019-01-14
gmungoc
JAL-2069 clear any error colour when setting threshold...
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2019-01-14
gmungoc
JAL-3125 tidy up
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2019-01-14
gmungoc
JAL-3125 avoid slider 'rounding' threshold field value
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2019-01-08
gmungoc
JAL-3180 Disabled 'By Annotation' group colour menu...
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2019-01-04
gmungoc
JAL-3180 fix By Annotation selection state in colour...
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2019-01-04
gmungoc
JAL-3181 refactor: extracted buildLinkMenu() for testability
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2019-01-04
gmungoc
JAL-3181 simplified code and test
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2019-01-03
gmungoc
JAL-3181 order link menu items
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2019-01-03
gmungoc
JAL-1889 additional test for clover-added fields
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2019-01-03
gmungoc
JAL-1889 ignore 'synthetic' fields added for jacoco
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2018-12-21
gmungoc
JAL-1767 minimise local variable scope
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2018-12-19
gmungoc
JAL-2621 Overview uses hand cursor in drag box, crosshair...
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2018-12-19
gmungoc
JAL-3178 include non-positional features in their group...
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2018-12-19
gmungoc
JAL-2791 JAL-2808 correct Javadoc for api method
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2018-12-19
gmungoc
JAL-3032 ignore /site also on non-JS branches
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2018-12-10
gmungoc
JAL-1421 added type to List and Vector
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2018-12-10
gmungoc
JAL-3169 leave file browser open on Cancel in overwrite...
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2018-12-06
gmungoc
JAL-1854 fix Checkstyle import violations
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2018-12-06
gmungoc
JAL-1854 Checkstyle updated to 8.12
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2018-12-03
gmungoc
JAL-3063 Castor removed from codebase
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2018-12-03
gmungoc
Merge branch 'feature/JAL-3063JAXB' into feature/JAL...
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2018-11-30
gmungoc
JAL-2420 don't offer Reveal All over alignment panel
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2018-11-30
gmungoc
JAL-3166 catch NPE if all sequences are hidden
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2018-11-29
gmungoc
JAL-3140 updated IntervalStore jar
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2018-11-29
gmungoc
JAL-3140 named tagged version of intervalstore.jar
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2018-11-29
gmungoc
JAL-3140 NCList now via IntervalStore library
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2018-11-28
gmungoc
JAL-3164 redraw complement overview on hide columns
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2018-11-28
gmungoc
JAL-3158 additional calls to reset 'selection changed...
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2018-11-22
gmungoc
JAL-3161 limit tooltip and status updates to visible...
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2018-11-19
gmungoc
JAL-3154 disable drag to reorder JTable columns
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2018-11-08
gmungoc
JAL-1889 ignore Clover instrumentation in test (second...
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2018-11-08
gmungoc
JAL-1889 unit test tweaks for running on server
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2018-10-25
gmungoc
JAL-3143 unit tests updated for code changes!
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2018-10-25
gmungoc
JAL-3143 comma-delimited feature attributes for alleles,
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2018-10-25
gmungoc
JAL-3143 fetch Ensembl(Genomes) features as JSON not GFF
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2018-10-23
gmungoc
JAL-3139 check group visibility when removing 'redundant...
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2018-10-08
gmungoc
JAL-1244 comments, javadoc, method signature tweaks
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2018-10-08
gmungoc
JAL-1244 editSequence extract method refactoring
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2018-10-05
gmungoc
JAL-1244 improved status message for insert/delete gap
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2018-10-04
gmungoc
JAL-3132 status message for sequence and/or graph group...
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2018-10-04
gmungoc
JAL-1244 no status message (yet) for locked edit of...
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2018-10-04
gmungoc
JAL-1244 status message for insert/delete gaps on single...
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2018-10-04
gmungoc
JAL-1244 status message while dragging a stretch group
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2018-10-04
gmungoc
JAL-3132 set status message when over sequence id or...
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2018-10-04
gmungoc
JAL-3093 unit tests, no mouse action over left/right...
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2018-10-03
gmungoc
JAL-3093 tweaks to code and test for 3px gap above...
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2018-10-02
gmungoc
JAL-3093 unit tests for SeqPanel.findMousePosition
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2018-10-02
gmungoc
JAL-3093 limited Consensus popup menu when in wrapped...
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2018-10-02
gmungoc
JAL-3093 added MousePos.isOverAnnotation() for extra...
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2018-10-01
gmungoc
JAL-3093 'read-only' annotations when in wrapped mode
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2018-10-01
gmungoc
JAL-3093 refactor (+test) Annotation Labels tooltip...
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2018-10-01
gmungoc
JAL-3093 unit tests for finding annotation row index...
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2018-10-01
gmungoc
JAL-3093 show annotation tooltips and status message...
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2018-09-28
gmungoc
JAL-3063 service param files read/saved using JAXB...
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2018-09-28
gmungoc
JAL-3063 top level element added to JalviewWsParamSet.xsd
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2018-09-28
gmungoc
JAL-3063 comments re use of xjc to generate Java binding...
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2018-09-27
gmungoc
JAL-2791 refactored Export Features to apply all visibility...
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2018-09-27
gmungoc
JAL-2791 new method to test if feature fails colour...
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2018-09-27
gmungoc
JAL-2791 method that tests all conditions for feature...
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2018-09-26
gmungoc
JAL-3125 tidy up
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2018-09-26
gmungoc
JAL-3125 avoid slider 'rounding' threshold field value
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2018-09-24
gmungoc
JAL-3063 tidy commented out code
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2018-09-21
gmungoc
JAL-3063 wrappers with check for null getting optional...
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2018-09-21
gmungoc
JAL-3120 preserve feature colour/mincolour/maxcolour...
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2018-09-20
gmungoc
JAL-2843 tweaks to help text for filters
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2018-09-20
gmungoc
JAL-2843 help text for colour by attribute, feature...
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2018-09-19
gmungoc
JAL-3120 preserve plain colour value when changing...
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2018-09-19
gmungoc
Merge branch 'develop' of https://source.jalview.org...
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2018-09-19
gmungoc
JAL-2808 JAL-3032 drop tabbed layout for Colours and...
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2018-09-19
gmungoc
JAL-3063 use JAXB for 'Save as Project' and load project...
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2018-09-19
gmungoc
JAL-3063 unit test for save/load project switched to...
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2018-09-18
gmungoc
JAL-3063 Save/Load user defined colours using JAXB
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2018-09-18
gmungoc
JAL-3063 Save/Load user colour scheme using JAXB
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2018-09-18
gmungoc
JAL-3063 top level element added to colours schema...
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2018-09-18
gmungoc
JAL-3063 New View via JAXB
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2018-09-18
gmungoc
JAL-3063 temporary extra menu option to save/load project...
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2018-09-18
gmungoc
JAL-3063 first version of Jalview2XML using JAXB to...
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2018-09-18
gmungoc
JAL-3063 JAXB binding classes generated by xjc from...
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2018-09-18
gmungoc
JAL-3063 tweak schema so JAXB tool xjc recognises XML...
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2018-09-18
gmungoc
JAL-3063 tweak schema so JAXB generates enums for enumerated...
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2018-09-17
gmungoc
JAL-3116 test method renamed to match code
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2018-09-17
gmungoc
JAL-3116 unit tests adapted to EMBL over JAXB
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2018-09-14
gmungoc
JAL-3116 parse EMBL XML with JAXB (todo: update unit...
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2018-09-13
gmungoc
JAL-3116 Uniprot XML unmarshalled using JAXB not Castor
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2018-09-12
gmungoc
Merge branch 'develop' of https://source.jalview.org...
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2018-09-12
gmungoc
Merge branch 'develop' of https://source.jalview.org...
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2018-09-12
gmungoc
JAL-1551 reinstated Save actions
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2018-09-10
gmungoc
JAL-3099 use Alignment.getVisibleWidth() where wanted
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2018-09-10
gmungoc
JAL-3099 new method AlignmentI.getVisibleWidth()
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2018-09-10
gmungoc
JAL-3097 adjust viewport width on hiding columns
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