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Merge branch 'features/JAL-1369_refseqproject' into develop
2016-06-21 Jim ProcterMerge branch 'features/JAL-1369_refseqproject' into...
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2016-06-21 Jim ProcterJAL-1369 make sure desktop is cleared before test starts
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2016-06-21 Jim ProcterJAL-1369 jalview2xml tests need to be run sequentially
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2016-06-21 Jim ProcterJAL-1369 mark reference sequence & view state and restore it
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2016-06-21 Jim ProcterJAL-1369 project XML efficiency TODO
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2016-06-21 Jim ProcterJAL-1369 dead code TODO?
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2016-06-21 Jim ProcterJAL-1369 ensure *real* alignment’s metadata written...
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2016-06-21 Jim ProcterJAL-1369 fix the test
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2016-06-21 Jim ProcterJAL-1369 make sure the fake AlignmentI produced by...
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2016-06-21 Jim ProcterJAL-1369 HUGE WARNING: datamodel.HiddenSequences is...
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2016-06-20 Jim ProcterJAL-1369 updated project schema - flag on JSeq to mark...
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2016-06-20 Jim ProcterJAL-1369 failing test
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2016-06-20 Jim ProcterJAL-1989 JAL-1011 release notes
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2016-06-20 Jim ProcterJAL-2086 JAL-2085 release notes
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2016-06-20 Jim ProcterMerge branch 'develop' of http://source.jalview.org...
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2016-06-20 Jim ProcterJAL-2065 release notes
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2016-06-20 Jim ProcterMerge branch 'bugs/JAL-2065' into develop
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2016-06-20 Jim ProcterJAL-2065 port patch to applet
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2016-06-20 Jim ProcterJAL-1551 tidy
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2016-06-20 Jim ProcterJAL-1551 tidy
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2016-06-20 Jim ProcterJAL-2065 don’t pass stale group reference
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2016-06-20 Jim ProcterJAL-2068 avoid ArrayIndexOutOfBounds when consensus...
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2016-06-20 Jim ProcterJAL-2065 check position lies within group before getting...
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2016-06-20 Jim ProcterMerge branch 'r291_docs' into develop
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2016-06-20 Jim ProcterJAL-1812 groovy always present
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2016-06-20 Jim ProcterJAL-1812 release notes
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2016-06-20 Jim ProcterJAL-1812 documentation TBC for AlignFrame->Calculate...
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2016-06-20 Jim ProcterJAL-2089 typo
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2016-06-20 Jim ProcterJAL-1868 fix typo in test data.
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2016-06-20 Jim ProcterMerge branch 'features/JAL-1812_JAL-2083_groovyBinding...
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2016-06-20 Jim ProcterMerge branch 'develop' into features/JAL-1812_JAL-2083_groov...
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2016-06-16 Jim Proctertests for validating start-end number/sequence length...
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2016-06-10 Jim ProcterMerge branch 'r291_docs' into develop
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2016-06-10 Jim ProcterJAL-2089 docs for June 10th
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2016-06-10 Jim ProcterJAL-2089 signed off bug release notes
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2016-06-10 Jim ProcterJAL-1941 remove improper test tag from Annotate3D test...
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2016-06-10 Jim ProcterJAL-2089 documenting for 8th june RC1
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2016-06-10 Jim ProcterJAL-1941 added test URL and notes about PyRNA restclient
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2016-06-10 Jim ProcterJAL-1941 Annotate3d tests should be in network group
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2016-06-02 Jim ProcterJAL-2125 remove SHA256 digest manifest and signatures...
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2016-06-02 Jim ProcterJAL-2125 remove SHA256 digest manifest and signatures...
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2016-06-01 Jim ProcterMerge branch 'testfix/JAL-2038' into develop
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2016-06-01 Jim ProcterJAL-2038 fix tests for case insensitive eSequenceIdMatcher
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2016-06-01 Jim ProcterJAL-2038 ensure bare Strings are lowercased before...
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2016-06-01 Jim ProcterMerge branch 'apifix/JAL-1926_JAL-2106' into develop
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2016-06-01 Jim Procterfix build
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2016-05-31 Jim ProcterMerge branch 'apifix/JAL-1926_JAL-2106' into develop
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2016-05-31 Jim ProcterJAL-1551 JAL-2106 javadoc
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2016-05-31 Jim ProcterJAL-2110 abstract methods should never reference their...
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2016-05-31 Jim ProcterMerge branch 'features/JAL-2113_emblXml1.2' into develop
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2016-05-31 Jim ProcterMerge branch 'develop' into features/JAL-2113_emblXml1.2
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2016-05-31 Jim ProcterMerge branch 'jims/291patches' into develop
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2016-05-30 Jim ProcterJAL-553 JAL-1557 always send selections after triggering...
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2016-05-30 Jim ProcterJAL-1557 allow group associated rows to be used to...
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2016-05-30 Jim ProcterJAL-2077 release notes
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2016-05-30 Jim ProcterJAL-2077 fix: convenience method and checks for CMD...
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2016-05-30 Jim ProcterJAL-1551 formatting
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2016-05-30 Jim ProcterJAL-2089 update release date for 2.9.1
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2016-05-30 Jim ProcterJAL-1552 fix JAL-2122 resolve File->string before adding...
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2016-05-26 Jim ProcterJAL-2030 - add servlet-api-3.1.jar to installAnywhere...
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2016-05-26 Jim ProcterMerge branch 'develop' of http://source.jalview.org...
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2016-05-26 Jim ProcterJAL-2121 refactor todo
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2016-05-26 Jim ProcterJAL-2089 update developer doc
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2016-05-26 Jim ProcterMerge branch 'develop' of http://source.jalview.org...
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2016-05-26 Jim ProcterJAL-1400 JAL-2089 allow configurable signature algorithms
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2016-05-26 Jim ProcterJAL-1551 formatting
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2016-05-26 Jim ProcterJAL-1552 refactor shared dataflavor hander
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2016-05-26 Jim ProcterJAL-1552 extra debug logging for dataflavor if drop...
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2016-05-25 Jim ProcterJAL-1522 patch - try to pick best text dataflavor
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2016-05-06 Jim ProcterMerge branch 'features/JAL-192_scalerelativetoseq'...
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2016-05-06 Jim ProcterJAL-192 fix javadoc
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2016-05-06 Jim ProcterJAL-192 JAL-2099 unused variables
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2016-05-06 Jim ProcterJAL-1551 formatting
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2016-05-06 Jim ProcterJAL-192 JAL-2099 reuse refactored scale code for wrapped...
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2016-05-06 Jim ProcterJAL-192 JAL-2099 factored out calculation from rendering...
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2016-05-06 Jim ProcterJAL-192 JAL-2099 factored out calculation from rendering...
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2016-05-06 Jim ProcterJAL-192 JAL-2099 factored out calculation from rendering...
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2016-05-06 Jim ProcterJAL-2100 centre triangles on hidden column vertical...
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2016-05-06 Jim ProcterJAL-2100 optimisation
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2016-05-06 Jim ProcterJAL-2100 triangles shown below in jvdesktop unwrapped...
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2016-05-06 Jim ProcterJAL-192 patch off-by-one for pathological gap case
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2016-05-05 Jim ProcterJAL-192 patch for off-by one and pathological case...
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2016-05-04 Jim ProcterRevert "JAL-2074 removed xerces to explore wierdness"
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2016-05-03 Jim ProcterMerge branch 'r291_docs' into develop
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2016-05-02 Jim ProcterJAL-1270 move some Network tests to External (require...
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2016-05-02 Jim ProcterJAL-1270 capitalise test groups
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2016-05-02 Jim ProcterJAL-2089 JAL-1551 formatting
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2016-05-02 Jim ProcterJAL-2089 release 2.9.1 entry in release notes
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2016-04-29 Jim ProcterMerge branch 'features/JAL-192_scalerelativetoseq'...
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2016-04-29 Jim ProcterJAL-192 need visible and actual sequence limits for...
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2016-04-29 Jim ProcterJAL-192 fix bounds when no hidden regions, and when...
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2016-04-29 Jim ProcterJAL-192 scale origin relative to start of reference...
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2016-04-29 Jim ProcterJAL-966 JAL-1553
 todo: remove UI components from Column...
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2016-04-29 Jim ProcterJAL-1551 formatting

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2016-04-29 Jim ProcterJAL-192 ‘efficiently’ locate visible bounds for a sequence...
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2016-04-29 Jim ProcterJAL-1551 formatting
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2016-04-27 Jim ProcterMerge branch 'features/JAL-192_scalerelativetoseq'...
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2016-04-27 Jim ProcterJAL-192 fix off-by-one for alignment ruler with no...
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2016-04-27 Jim ProcterMerge branch 'features/JAL-192_scalerelativetoseq'...
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2016-04-27 Jim ProcterJAL-192 show reference sequence position and residue...
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