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Merge branch 'JAL-2571' into develop
2017-05-31 Jim ProcterMerge branch 'JAL-2571' into develop
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2017-05-31 Jim ProcterMerge branch 'documentation/JAL-2418_release2102' into...
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2017-05-31 Jim ProcterJAL-2398 - updated groovy script for direct field modification
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2017-05-31 Jim ProcterJAL-2418 JAL-2563 release notes
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2017-05-31 Jim ProcterJAL-2418 typo
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2017-05-31 Jim ProcterMerge branch 'develop' into documentation/JAL-2418_release2102
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2017-05-29 Jim ProcterMerge branch 'bug/JAL-2034contextchange' into develop
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2017-05-29 Jim ProcterJAL-2388 release notes
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2017-05-29 Jim ProcterMerge branch 'documentation/JAL-2418_release2102' into...
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2017-05-29 Jim ProcterJAL-2520 properly documented as a fixed bug in release...
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2017-05-29 Jim ProcterMerge branch 'documentation/JAL-2418_release2102' into...
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2017-05-29 Jim ProcterJAL-2465,JAL-2520,JAL-2533 release notes
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2017-05-29 Jim ProcterMerge branch 'features/JAL-2465_No-mapping_Jmol-structures...
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2017-05-29 Jim ProcterJAL-2533 update javadoc
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2017-05-29 Jim ProcterJAL-2465 fixed groups for JmolViewerTest.testStructureLoadin...
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2017-05-29 Jim ProcterMerge branch 'bug/JAL-2536' into develop
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2017-05-29 Jim ProcterJAL-2536 tweak javadoc wording
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2017-05-29 Jim ProcterMerge branch 'documentation/JAL-2418_release2102' into...
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2017-05-29 Jim ProcterJAL-2517 release notes
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2017-05-29 Jim ProcterMerge branch 'bug/JAL-2517cancelAppletColour' into...
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2017-05-29 Jim Procterrelease notes
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2017-05-29 Jim ProcterJAL-2418 updated JABAWS server in what’s new
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2017-05-29 Jim ProcterJAL-2491 JAL-2526 JAL-2566 JAL-2563 JAL-2547 release...
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2017-05-27 Jim ProcterMerge branch 'bug/JAL-2491' into develop
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2017-05-27 Jim ProcterMerge branch 'bug/JAL-2547tooltipOnGap' into develop
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2017-05-27 Jim ProcterMerge branch 'task/JAL-2562_SequenceI.findPosition...
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2017-05-27 Jim ProcterJAL-2563 failing test to verify SetStatus returns position...
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2017-05-27 Jim ProcterJAL-2563 test to verify SetStatus returns -1 so mouseOver...
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2017-05-27 Jim ProcterMerge branch 'task/JAL-2562_SequenceI.findPosition...
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2017-05-27 Jim ProcterJAL-2547 JAL-2562 rejig SetStatusMessage return value...
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2017-05-27 Jim ProcterMerge branch 'task/JAL-2562_SequenceI.findPosition...
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2017-05-27 Jim ProcterJAL-2526 test and documentation for SeqPanel.setStatus...
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2017-05-27 Jim ProcterJAL-2562 javadoc TODO
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2017-05-26 Jim ProcterMerge branch 'documentation/JAL-2418_release2102' into...
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2017-05-26 Jim ProcterJAL-2418 updated JPred documentation and screenshot...
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2017-05-26 Jim ProcterJAL-2418 JAL-2549 JABAWS 2.2 release notes
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2017-05-26 Jim ProcterMerge branch 'features/JAL-2549_updateJABAWSto220'...
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2017-05-23 Jim ProcterJAL-2549 RNAAliFold result to annotation file roundtrip...
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2017-05-23 Jim ProcterJAL-2549 skip ‘Unrecognised Service’ which resolves...
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2017-05-23 Jim ProcterJAL-2549 replace JABAWS 2.1 with 2.2 client and remove...
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2017-05-22 Jim ProcterJAL-2418 patch build - broken htsjdk import
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2017-05-18 Jim ProcterMerge branch 'bug/JAL-2388_typeCheckAlignView.getUpdatedView...
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2017-05-18 Jim ProcterJAL-2388 return empty hidden columns for fully visible...
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2017-05-18 Jim ProcterJAL-2418 remove explicit test suite stats
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2017-05-17 Jim ProcterMerge branch 'develop' into documentation/JAL-2418_release2102
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2017-05-17 Jim ProcterMerge branch 'bug/JAL-2510amendFeatures' into develop
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2017-05-17 Jim ProcterJAL-2447 add links to issues.jalview.org for experimental...
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2017-05-17 Jim ProcterMerge branch 'documentation/JAL-2418_release2102' into...
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2017-05-17 Jim ProcterJAL-2447 experimental section in ‘Whats New’
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2017-05-17 Jim ProcterJAL-2447 JAL-2295 JAL-2296 documenting as experimental...
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2017-05-17 Jim ProcterMerge branch 'develop' into documentation/JAL-2418_release2102
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2017-05-17 Jim ProcterMerge branch 'features/JAL-2447experimentalFlag' into...
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2017-05-17 Jim ProcterJAL-2418 release notes
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2017-05-16 Jim ProcterMerge branch 'documentation/JAL-2418_release2102' into...
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2017-05-16 Jim ProcterJAL-2418 release notes
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2017-05-16 Jim ProcterJAL-384 documentation on custom colours groovy examples
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2017-05-16 Jim ProcterJAL-384 - groovy scripts for conserved/unconserved...
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2017-05-16 Jim ProcterJAL-2418 release notes
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2017-05-16 Jim ProcterJAL-2418 JAL-2316 added to new features
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2017-05-16 Jim ProcterJAL-2316 tweaking docs and links in help
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2017-05-16 Jim ProcterJAL-2418 release 2.10.2 release notes template
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2017-05-16 Jim Procteralternative patch for JAL-2339 readability in java...
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2017-05-16 Jim ProcterMerge branch 'bug/JAL-2507_rnasecstrstockholm' into...
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2017-05-15 Jim ProcterJAL-2507 fix test: knockon from capitalisation on secondary...
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2017-05-15 Jim ProcterMerge branch 'bug/JAL-2507_rnasecstrstockholm' into...
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2017-05-15 Jim ProcterJAL-2311 disable and relocate Jared service tests to...
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2017-05-15 Jim ProcterJAL-2507 capitalisation for annotation lines generated...
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2017-05-15 Jim ProcterJAL-2507 case insensitive recognition of annotation...
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2017-05-15 Jim ProcterJAL-2507 - required callers to specify exact ignore...
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2017-05-15 Jim ProcterJAL-2535 quick hack to implement posterior probabilities...
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2017-05-15 Jim ProcterMerge branch 'features/JAL-2376_add-horizontal-bar...
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2017-05-15 Jim ProcterJAL-2371 create a default ResidueShader when constructing...
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2017-05-12 Jim ProcterMerge branch 'features/JAL-2435splitScreenFont' into...
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2017-05-12 Jim ProcterJAL-2418 broken help ref
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2017-05-12 Jim ProcterJAL-2435 documentation and what’s new
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2017-05-12 Jim ProcterJAL-2435 mention new checkbox in linked cDNA/Protein...
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2017-05-12 Jim ProcterJAL-2435 mirror antiAlias setting between cDNA and...
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2017-05-12 Jim ProcterMerge branch 'features/JAL-2388OverviewWindow' into...
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2017-05-12 Jim ProcterJAL-2388 mention overview popup in documentation
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2017-05-12 Jim ProcterJAL-2388 checkbox in overview popup for applet
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2017-05-12 Jim ProcterMerge branch 'features/JAL-2228_efficient_featurecounts...
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2017-05-12 Jim ProcterJAL-2228 updated script in help docs, renamed docs...
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2017-05-11 Jim ProcterMerge branch 'bug/JAL-2507_rnasecstrstockholm' into...
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2017-05-11 Jim ProcterJAL-2509 JAL-2507 allow whitespace in GS annotation...
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2017-05-11 Jim ProcterJAL-2507 JAL-2509 allow whitespace==null for annotation...
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2017-05-11 Jim ProcterJAL-2507 test if an annotation is ‘whitespace’
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2017-05-11 Jim ProcterJAL-2507 Annotation.EMPTY_ANNOTATION - non-null whitespace...
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2017-05-09 Jim ProcterJAL-2507 spit out tests for ‘{‘ WUSS io from ‘[‘ WUSS...
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2017-05-09 Jim ProcterJAL-2509 verify stockholm parser’s bracket regex is...
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2017-05-09 Jim ProcterJAL-2509 extend set of brackets recognised by stockholm...
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2017-05-09 Jim ProcterJAL-2507 JAL-2509 extend test to cover round trip of...
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2017-05-09 Jim ProcterJAL-2507 unpaired RNA marked as ‘ ‘ in Stockholm SS...
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2017-05-09 Jim ProcterJAL-2507 output secondary structure regardless of presence...
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2017-05-09 Jim ProcterJAL-2507 simplify round trip test via AppletFormatAdapter
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2017-05-09 Jim ProcterJAL-2507 test for alignment+rna annotation -> Stockholm...
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2017-05-04 Jim ProcterMerge branch 'develop' into features/JAL-2228_efficient_feat...
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2017-05-04 Jim ProcterMerge branch 'bug/JAL-2507_rnasecstrstockholmoutput...
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2017-05-04 Jim ProcterMerge branch 'features/JAL-2503_filteronquantitativeannotati...
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2017-05-04 Jim ProcterMerge branch 'features/JAL-2393customMatrices' into...
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2017-05-04 Jim ProcterJAL-1656 make RNAML->Stockholm round trip test pass...
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