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2011-01-21	jprocter	ensure source is rarely null	commit \| commitdiff \| tree
2011-01-21	jprocter	extended mouseover message with absolute sequence position...	commit \| commitdiff \| tree
2011-01-18	jprocter	patch for JAL-695 - need to test if this is observed...	commit \| commitdiff \| tree
2011-01-18	jprocter	patch for JAL-695	commit \| commitdiff \| tree
2011-01-18	jprocter	javadoc	commit \| commitdiff \| tree
2011-01-18	jprocter	javadoc	commit \| commitdiff \| tree
2011-01-18	jprocter	avoid creating lots of identical search results. patch...	commit \| commitdiff \| tree
2011-01-18	jprocter	removed securityException caused by accessing class...	commit \| commitdiff \| tree
2011-01-18	jprocter	refactored VamsasListener to allow the source of the...	commit \| commitdiff \| tree
2011-01-17	jprocter	additional test - http://www.koders.com/java/fid4C9593FE80CE...	commit \| commitdiff \| tree
2011-01-17	jprocter	warn user that no JS callbacks will work by default...	commit \| commitdiff \| tree
2011-01-17	jprocter	need to own lock to notify	commit \| commitdiff \| tree
2011-01-17	jprocter	need to own lock to notify	commit \| commitdiff \| tree
2011-01-17	jprocter	avoid 1.5 specific methods	commit \| commitdiff \| tree
2011-01-17	jprocter	revised default separator string expression to avoid...	commit \| commitdiff \| tree
2011-01-17	jprocter	allow debug messages to be output before jscallback...	commit \| commitdiff \| tree
2011-01-17	jprocter	refactored javascript callback to parent class.	commit \| commitdiff \| tree
2011-01-17	jprocter	eliminate utf8 compilation errors	commit \| commitdiff \| tree
2011-01-17	jprocter	use local reference for current target frame as set...	commit \| commitdiff \| tree
2011-01-17	jprocter	JAL-750 and JAL-451	commit \| commitdiff \| tree
2011-01-13	jprocter	output jsexception message	commit \| commitdiff \| tree
2011-01-12	jprocter	handlers with no specified alignframe broadcast events...	commit \| commitdiff \| tree
2011-01-12	jprocter	application compilation time dependency plugin.jar...	commit \| commitdiff \| tree
2011-01-12	jprocter	updated jar dependencies	commit \| commitdiff \| tree
2011-01-12	jprocter	1.1 compat	commit \| commitdiff \| tree
2011-01-12	jprocter	javascript callback for selection, mousover, and functions...	commit \| commitdiff \| tree
2011-01-12	jprocter	selection should be sent after refresh happens	commit \| commitdiff \| tree
2011-01-12	jprocter	javadoc	commit \| commitdiff \| tree
2011-01-12	jprocter	java side javascript callback enactors JAL-469	commit \| commitdiff \| tree
2011-01-12	jprocter	updated dependencies for project	commit \| commitdiff \| tree
2011-01-12	jprocter	jalviewLite now needs plugin.jar from jre so it can...	commit \| commitdiff \| tree
2011-01-10	jprocter	patch for JAL-740	commit \| commitdiff \| tree
2011-01-07	jprocter	refactored dropFile allowing known information to be...	commit \| commitdiff \| tree
2011-01-07	jprocter	bulk associate pdb files dropped on to alignment :...	commit \| commitdiff \| tree
2011-01-07	jprocter	refactored guts of pdb file association code	commit \| commitdiff \| tree
2011-01-07	jprocter	check for all http protocols	commit \| commitdiff \| tree
2011-01-07	jprocter	refactored to use SequenceI	commit \| commitdiff \| tree
2011-01-06	jprocter	JAL-730	commit \| commitdiff \| tree
2011-01-05	jprocter	more robust calculation of partition from possibly...	commit \| commitdiff \| tree
2011-01-05	jprocter	inline submission of alignment with correct crlf	commit \| commitdiff \| tree
2011-01-05	jprocter	ensure group props are recalculated before alignment...	commit \| commitdiff \| tree
2011-01-05	jprocter	revised shmr service	commit \| commitdiff \| tree
2011-01-05	jprocter	todo and ensure old annotation/groups are removed before...	commit \| commitdiff \| tree
2011-01-05	jprocter	todo	commit \| commitdiff \| tree
2011-01-05	jprocter	exception reporting for bad URLs	commit \| commitdiff \| tree
2011-01-05	jprocter	JAL-727	commit \| commitdiff \| tree
2011-01-05	jprocter	JAL-727	commit \| commitdiff \| tree
2011-01-05	jprocter	propagated groups trimmed to correct region on viscontig	commit \| commitdiff \| tree
2011-01-05	jprocter	graphThreshold not being copied by constructor	commit \| commitdiff \| tree
2010-12-17	jprocter	first publicly accessible test of JAL-724	commit \| commitdiff \| tree
2010-12-17	jprocter	JAL-715 and JAL-724	commit \| commitdiff \| tree
2010-12-17	jprocter	JAL-715	commit \| commitdiff \| tree
2010-12-17	jprocter	refined modification test	commit \| commitdiff \| tree
2010-12-17	jprocter	refactored gap insert/visible view modification code...	commit \| commitdiff \| tree
2010-12-17	jprocter	adjust start and end of intersecting group relative...	commit \| commitdiff \| tree
2010-12-17	jprocter	1.1 compat	commit \| commitdiff \| tree
2010-12-17	jprocter	1.1 compat	commit \| commitdiff \| tree
2010-12-17	jprocter	refactored gap insert/visible view modification code...	commit \| commitdiff \| tree
2010-12-17	jprocter	javadoc	commit \| commitdiff \| tree
2010-12-15	jprocter	incremental refinement of results parsing	commit \| commitdiff \| tree
2010-12-15	jprocter	allow client to check if the original alignment data...	commit \| commitdiff \| tree
2010-12-15	jprocter	javadoc	commit \| commitdiff \| tree
2010-12-15	jprocter	update modification state flag according to parsing...	commit \| commitdiff \| tree
2010-12-15	jprocter	getters and modification state flag	commit \| commitdiff \| tree
2010-12-15	jprocter	more accurate determination of annotation modification	commit \| commitdiff \| tree
2010-12-15	jprocter	refactored key calc for hash to separate function	commit \| commitdiff \| tree
2010-12-14	jprocter	1.1 compat	commit \| commitdiff \| tree
2010-12-14	jprocter	1.1 compat	commit \| commitdiff \| tree
2010-12-14	jprocter	more fixes and extension to allow return data types...	commit \| commitdiff \| tree
2010-12-14	jprocter	render of html job logs and link opening JAL-720	commit \| commitdiff \| tree
2010-12-14	jprocter	more efficient set/append	commit \| commitdiff \| tree
2010-12-14	jprocter	method to recover sources from packed stream	commit \| commitdiff \| tree
2010-12-14	jprocter	always provide reference to hashtable so feature settings...	commit \| commitdiff \| tree
2010-12-14	jprocter	JAL-725 - show progress when opening URL in browser	commit \| commitdiff \| tree
2010-12-14	jprocter	JAL-724	commit \| commitdiff \| tree
2010-12-14	jprocter	refactored and patched for JAL-721	commit \| commitdiff \| tree
2010-12-14	jprocter	refactored and patched for JAL-721	commit \| commitdiff \| tree
2010-12-10	jprocter	mime types and handler	commit \| commitdiff \| tree
2010-12-10	jprocter	additional dependencies for httpcleint	commit \| commitdiff \| tree
2010-12-10	jprocter	javadoc	commit \| commitdiff \| tree
2010-12-10	jprocter	remove implicit non-1.1 compatible call	commit \| commitdiff \| tree
2010-12-09	jprocter	fix case when groups overlap - ensure groups are non...	commit \| commitdiff \| tree
2010-12-09	jprocter	java 1.1 patches	commit \| commitdiff \| tree
2010-12-09	jprocter	java 1.1 patches	commit \| commitdiff \| tree
2010-12-09	jprocter	dependency for Rest client framework (JAL-715)	commit \| commitdiff \| tree
2010-12-09	jprocter	initial implementation of Rest client framework (JAL...	commit \| commitdiff \| tree
2010-12-09	jprocter	dataIn.ready() is not a test of data source validity!	commit \| commitdiff \| tree
2010-12-09	jprocter	initial list of mime-type bindings to jalview data...	commit \| commitdiff \| tree
2010-12-09	jprocter	initial implementation for JAL-718	commit \| commitdiff \| tree
2010-12-09	jprocter	refactored and added methods for getting richer AlignmentVie...	commit \| commitdiff \| tree
2010-12-09	jprocter	new methods and test code for JAL-716	commit \| commitdiff \| tree
2010-12-09	jprocter	new constructor and refactored methods for intersecting...	commit \| commitdiff \| tree
2010-12-09	jprocter	new methods for testing for/storing selection/group...	commit \| commitdiff \| tree
2010-12-09	jprocter	javadoc and additional convenience method for JAL-716	commit \| commitdiff \| tree
2010-12-02	jprocter	refactored visible contig/gap map array intersection...	commit \| commitdiff \| tree
2010-11-15	jprocter	2.6.1 update	commit \| commitdiff \| tree
2010-11-14	jprocter	refactored to decouple dependencies due to FileParse...	commit \| commitdiff \| tree
2010-11-14	jprocter	refactored protocol check to jalview.io.FileParse	commit \| commitdiff \| tree
2010-11-14	jprocter	import annotation file from datasource	commit \| commitdiff \| tree
2010-11-14	jprocter	refactored protocol parser and allow human readable...	commit \| commitdiff \| tree
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