| 2018-01-18 |
gmungoc | JAL-2830 removed toUpperCase() from edited dataset...
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commit | commitdiff | tree |
| 2018-01-18 |
gmungoc | JAL-2541 removed redundant test flag
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commit | commitdiff | tree |
| 2018-01-18 |
gmungoc | JAL-2541 cutWithFeatures_exhaustive test including...
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commit | commitdiff | tree |
| 2018-01-17 |
gmungoc | Merge branch 'develop' into bug/JAL-2541cutRelocateFeatures
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| 2018-01-17 |
gmungoc | JAL-2679 case-insensitive comparison of query and retrieved...
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commit | commitdiff | tree |
| 2018-01-16 |
gmungoc | JAL-2679 use object_type=Transcript for lookup of Parent...
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commit | commitdiff | tree |
| 2017-11-13 |
gmungoc | JAL-2662 tweak README, format code
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commit | commitdiff | tree |
| 2017-11-13 |
gmungoc | JAL-2176 removed unused Sequence.index
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commit | commitdiff | tree |
| 2017-11-13 |
gmungoc | JAL-2830 failing test added for Replace
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commit | commitdiff | tree |
| 2017-11-13 |
gmungoc | JAL-2679 example accession changed to CAD01290
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| 2017-11-13 |
gmungoc | Merge branch 'bug/JAL-2829deleteCharsWithGaps' into
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commit | commitdiff | tree |
| 2017-11-13 |
gmungoc | JAL-2541 add new dataset sequence to alignment dataset
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commit | commitdiff | tree |
| 2017-11-13 |
gmungoc | JAL-2541 enable failing test for alignment dataset
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commit | commitdiff | tree |
| 2017-11-10 |
gmungoc | JAL-2829 fixes and unit tests
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commit | commitdiff | tree |
| 2017-11-10 |
gmungoc | JAL-2562 updated findPosition javadoc to match behaviour
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commit | commitdiff | tree |
| 2017-11-10 |
gmungoc | JAL-2829 unit tests for failing cases
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commit | commitdiff | tree |
| 2017-10-27 |
gmungoc | JAL-2526 updated javadoc
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commit | commitdiff | tree |
| 2017-10-24 |
gmungoc | JAL-2495 highlight all mapped sequences from structure...
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commit | commitdiff | tree |
| 2017-10-24 |
gmungoc | JAL-2788 corrected merge error in propertyChange
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commit | commitdiff | tree |
| 2017-10-24 |
gmungoc | JAL-2787 set start/end seq explicitly for test
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commit | commitdiff | tree |
| 2017-10-23 |
gmungoc | JAL-2776 repaint everything on toggle group colour
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commit | commitdiff | tree |
| 2017-10-23 |
gmungoc | JAL-1854 keep fallthrough but with comment to suppress...
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commit | commitdiff | tree |
| 2017-10-23 |
gmungoc | JAL-1854 remove fallthrough of switch case (Checkstyle...
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commit | commitdiff | tree |
| 2017-10-23 |
gmungoc | JAL-2737 JAL-1854 corrected package suppressions, updated...
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commit | commitdiff | tree |
| 2017-10-20 |
gmungoc | JAL-2253 pull up constant, additional unit test
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commit | commitdiff | tree |
| 2017-10-20 |
gmungoc | JAL-2609 fully erase scale above, tidy code change
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commit | commitdiff | tree |
| 2017-10-19 |
gmungoc | JAL-2609 adjustments for test findings
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commit | commitdiff | tree |
| 2017-10-11 |
gmungoc | JAL-2609 tests updated for revised label width
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commit | commitdiff | tree |
| 2017-10-11 |
gmungoc | JAL-2772 check array bounds for sequence access
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commit | commitdiff | tree |
| 2017-10-11 |
gmungoc | JAL-2225 updates for review comments, Checkstyle
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commit | commitdiff | tree |
| 2017-10-11 |
gmungoc | JAL-2609 tidy label width code, some checkstyle warnings
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commit | commitdiff | tree |
| 2017-10-11 |
gmungoc | Merge branch 'bug/JAL-2742' into develop
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commit | commitdiff | tree |
| 2017-10-11 |
gmungoc | JAL-2742 set HiddenColumns null for no hidden coluns...
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| 2017-10-11 |
gmungoc | Merge branch 'bug/JAL-2757_uniprotftsbadquery' into...
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| 2017-10-11 |
gmungoc | JAL-2757 fix PDB also; suppress stack trace and compiler...
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commit | commitdiff | tree |
| 2017-10-09 |
gmungoc | JAL-2480 use interface type for sequenceFeatureStore
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commit | commitdiff | tree |
| 2017-10-09 |
gmungoc | JAL-2523 basic sleep and retry (3 times) on 429 response...
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commit | commitdiff | tree |
| 2017-10-09 |
gmungoc | JAL-2523 convenience method to get model organisms
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commit | commitdiff | tree |
| 2017-10-04 |
gmungoc | JAL-2523 start of refactoring...
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commit | commitdiff | tree |
| 2017-10-02 |
gmungoc | JAL-2525 lookup transcript features by Ontology
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commit | commitdiff | tree |
| 2017-09-29 |
gmungoc | JAL-2745 update www.ebi.ac.uk to https
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commit | commitdiff | tree |
| 2017-09-28 |
gmungoc | JAL-2745 update www.ebi.ac.uk to https
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commit | commitdiff | tree |
| 2017-09-28 |
gmungoc | JAL-2036 set menus after fully loading AlignFrame
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commit | commitdiff | tree |
| 2017-09-25 |
gmungoc | JAL-2525 return no features if none matches ontology...
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commit | commitdiff | tree |
| 2017-09-18 |
gmungoc | Merge remote-tracking branch 'origin/patch/JAL-2732...
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commit | commitdiff | tree |
| 2017-09-18 |
gmungoc | JAL-2728 fine tuned initial split of split frame view
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commit | commitdiff | tree |
| 2017-09-15 |
gmungoc | JAL-2728 use right denominator for min/max ratio calculations
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commit | commitdiff | tree |
| 2017-09-15 |
gmungoc | JAL-2728 limit divider to ensure seqs visible (wip!)
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commit | commitdiff | tree |
| 2017-09-15 |
gmungoc | JAL-741 add tooltip to feature group checkbox
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commit | commitdiff | tree |
| 2017-09-14 |
gmungoc | JAL-2541 unit test added
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commit | commitdiff | tree |
| 2017-09-14 |
gmungoc | JAL-2541 test with seq start > 1 (and fix Undo bug...
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commit | commitdiff | tree |
| 2017-09-14 |
gmungoc | JAL-2541 it works!! it works!!!
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commit | commitdiff | tree |
| 2017-09-14 |
gmungoc | JAL-2541 clean unit test of cut/undo (ungapped sequence)
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commit | commitdiff | tree |
| 2017-09-14 |
gmungoc | JAL-2541 more useful assert message
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commit | commitdiff | tree |
| 2017-09-14 |
gmungoc | JAL-2541 save/Undo only 'diffs' for features with Cut...
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commit | commitdiff | tree |
| 2017-09-14 |
gmungoc | JAL-2541 adjust end of contact feature spanning cut...
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commit | commitdiff | tree |
| 2017-09-14 |
gmungoc | JAL-2541 clearer comments (redo of lost commit f7967ad)
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commit | commitdiff | tree |
| 2017-09-14 |
gmungoc | JAL-2541 length check in deleteChars (redoing lost...
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commit | commitdiff | tree |
| 2017-09-14 |
gmungoc | JAL-2541 working Cut/Undo with feature relocation
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commit | commitdiff | tree |
| 2017-09-14 |
gmungoc | JAL-2541 revised cut with features (work in progress)
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commit | commitdiff | tree |
| 2017-09-14 |
gmungoc | JAL-2727 null more fields in AlignmentViewport.dispose...
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commit | commitdiff | tree |
| 2017-09-14 |
gmungoc | JAL-2727 add SelectionGroup, Tree and PCA to test
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commit | commitdiff | tree |
| 2017-09-14 |
gmungoc | JAL-2727 method to check if PCAPanel thread is working
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commit | commitdiff | tree |
| 2017-09-13 |
gmungoc | JAL-2727 alignment width and height tailored to this...
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commit | commitdiff | tree |
| 2017-09-13 |
gmungoc | JAL-2727 null additional references on close
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commit | commitdiff | tree |
| 2017-09-12 |
gmungoc | Merge branch 'bug/JAL-2721fastPaintNPE' into develop
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commit | commitdiff | tree |
| 2017-09-12 |
gmungoc | Revert "JAL-2727 null hconsensus, "
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commit | commitdiff | tree |
| 2017-09-12 |
gmungoc | JAL-2727 null hconsensus,
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commit | commitdiff | tree |
| 2017-09-12 |
gmungoc | JAL-2727 first pass of test of memory recovery on close all
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commit | commitdiff | tree |
| 2017-09-12 |
gmungoc | JAL-2727 ensure ViewportRanges (and gapcounts) are...
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commit | commitdiff | tree |
| 2017-09-07 |
gmungoc | JAL-2511 invalidate scale panel holder on font change...
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commit | commitdiff | tree |
| 2017-09-07 |
gmungoc | JAL-2511 invalidate scale panel holder on font change...
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commit | commitdiff | tree |
| 2017-09-06 |
gmungoc | JAL-2721 no fastPaint if img has been nulled by fontChanged!
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commit | commitdiff | tree |
| 2017-09-06 |
gmungoc | JAL-2721 no fastPaint if img has been nulled by fontChanged!
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commit | commitdiff | tree |
| 2017-09-06 |
gmungoc | Merge remote-tracking branch 'origin/bug/JAL-2722'...
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commit | commitdiff | tree |
| 2017-09-05 |
gmungoc | JAL-2665 check for null selection group image
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commit | commitdiff | tree |
| 2017-09-05 |
gmungoc | JAL-2665 check for null selection group image
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commit | commitdiff | tree |
| 2017-09-05 |
gmungoc | JAL-2225 unused collateForPdb removed
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commit | commitdiff | tree |
| 2017-09-05 |
gmungoc | JAL-2225 fix bug in collating unique pdb files and...
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commit | commitdiff | tree |
| 2017-09-04 |
gmungoc | JAL-2617 unit tests for CDS + stop codon, CDS with...
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commit | commitdiff | tree |
| 2017-09-01 |
gmungoc | JAL-2617 omit stop codon from synthesized CDS sequence
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commit | commitdiff | tree |
| 2017-09-01 |
gmungoc | JAL-2216 remove alignment listener when Tree Panel...
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commit | commitdiff | tree |
| 2017-09-01 |
gmungoc | JAL-2488 remove finalize methods
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commit | commitdiff | tree |
| 2017-08-31 |
gmungoc | JAL-2105 REST versions updated to 6.1 (Ensembl) 6.0...
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commit | commitdiff | tree |
| 2017-08-31 |
gmungoc | JAL-2253 safer simpler resolution of identifiers using...
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commit | commitdiff | tree |
| 2017-08-31 |
gmungoc | JAL-2704 unit test for Above PID gap colour, simplified...
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commit | commitdiff | tree |
| 2017-08-30 |
gmungoc | JAL-2704 don't shade gap colour for PID/conservation
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commit | commitdiff | tree |
| 2017-08-30 |
gmungoc | JAL-2685 score matrix in sysout formatted with sequence...
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commit | commitdiff | tree |
| 2017-08-30 |
gmungoc | JAL-2685 tweaks to output spacing, updated TestAlignSeq...
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commit | commitdiff | tree |
| 2017-08-30 |
gmungoc | JAL-2685 use actual selection for report of pairwise...
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commit | commitdiff | tree |
| 2017-08-28 |
gmungoc | Merge branch 'bug/JAL-2687concurrentModification' into...
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commit | commitdiff | tree |
| 2017-08-28 |
gmungoc | JAL-2608 close any Overview when alignment view is...
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commit | commitdiff | tree |
| 2017-08-25 |
gmungoc | JAL-2687 use Iterator.remove() for safe deletion while...
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commit | commitdiff | tree |
| 2017-08-25 |
gmungoc | JAL-2480 suppress debug timing output that got left in
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commit | commitdiff | tree |
| 2017-08-23 |
gmungoc | JAL-2435 last lost commit e926a5d redone
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commit | commitdiff | tree |
| 2017-08-23 |
gmungoc | JAL-2435 last lost commit e926a5d redone
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commit | commitdiff | tree |
| 2017-08-23 |
gmungoc | JAL-2481 a smidgin more test coverage of findFeatures
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commit | commitdiff | tree |
| 2017-08-23 |
gmungoc | JAL-2682 non-regex sequence id parsing, and tests added
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commit | commitdiff | tree |
| 2017-08-23 |
gmungoc | JAL-2667 tests added, update status bar and tooltip
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commit | commitdiff | tree |
| 2017-08-22 |
gmungoc | JAL-2680 remove all mappings in test teardown
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commit | commitdiff | tree |
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