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2010-09-20	jprocter	ensure host is shown for all non-host indexed submenus	commit \| commitdiff \| tree
2010-09-19	jprocter	resolve pdb id/chain to pdb file/model number and chain	commit \| commitdiff \| tree
2010-09-19	jprocter	name change for jaba	commit \| commitdiff \| tree
2010-09-19	jprocter	cache the runner config so the preset list can be retrieved...	commit \| commitdiff \| tree
2010-09-19	jprocter	progress bar and OOM/Exception traps for project marshalling	commit \| commitdiff \| tree
2010-09-19	jprocter	catch case when a service has no parameters (or the...	commit \| commitdiff \| tree
2010-09-19	jprocter	make sure only one sequence datasource initialization...	commit \| commitdiff \| tree
2010-09-19	jprocter	hack to ensure that if window geometry was not stored...	commit \| commitdiff \| tree
2010-09-19	jprocter	thread off sequence fetcher initialisation to make...	commit \| commitdiff \| tree
2010-09-17	jprocter	show a save dialog box!	commit \| commitdiff \| tree
2010-09-17	jprocter	poss fix for JAL-656	commit \| commitdiff \| tree
2010-09-17	jprocter	make sure web service menu is always refreshed on 'OK'	commit \| commitdiff \| tree
2010-09-16	jprocter	reflect the state of a failed Job in the GUI (e.g....	commit \| commitdiff \| tree
2010-09-16	jprocter	patch to prevent NPE - which occurs if no features...	commit \| commitdiff \| tree
2010-09-15	jprocter	clean the dist directory before copying Jars	commit \| commitdiff \| tree
2010-09-15	jprocter	update jmol	commit \| commitdiff \| tree
2010-09-15	jprocter	added colour by label to feature type colourspec and...	commit \| commitdiff \| tree
2010-09-15	jprocter	reinstated the splitpanes with better size placement...	commit \| commitdiff \| tree
2010-09-14	jprocter	fix the javac issue for JmolApplet references in application...	commit \| commitdiff \| tree
2010-09-14	jprocter	update Jmol jar ref	commit \| commitdiff \| tree
2010-09-14	jprocter	appletgui should ve excluded from normal application...	commit \| commitdiff \| tree
2010-09-14	jprocter	streamlined app and applet jmol console + event handling...	commit \| commitdiff \| tree
2010-09-13	jprocter	refactored to remove App reference in Applet (JAL-638)	commit \| commitdiff \| tree
2010-09-13	jprocter	refactored to remove App reference in Applet (JAL-638)	commit \| commitdiff \| tree
2010-09-13	jprocter	patched Jmol and code for embedding JmolAppConsole...	commit \| commitdiff \| tree
2010-09-13	jprocter	patched Jmol and code for embedding JmolAppConsole...	commit \| commitdiff \| tree
2010-09-10	jprocter	jabaws, not jaba	commit \| commitdiff \| tree
2010-09-10	jprocter	threaded off ws menu building to avoid initial pause...	commit \| commitdiff \| tree
2010-09-10	jprocter	properly report invalid jobs (server doesn't support...	commit \| commitdiff \| tree
2010-09-10	jprocter	early bail out for long urls, and threaded off group...	commit \| commitdiff \| tree
2010-09-09	jprocter	wrap preset description tooltips	commit \| commitdiff \| tree
2010-09-09	jprocter	remove duplicate host URLs in service list when not...	commit \| commitdiff \| tree
2010-09-09	jprocter	wrap tooltips and revise layout (JAL-644)	commit \| commitdiff \| tree
2010-09-09	jprocter	wrap tooltips	commit \| commitdiff \| tree
2010-09-09	jprocter	tabbed panes for parameters and options.	commit \| commitdiff \| tree
2010-09-08	jprocter	JAL-634 and JAL-635	commit \| commitdiff \| tree
2010-09-08	jprocter	JAL-634	commit \| commitdiff \| tree
2010-09-08	jprocter	todos & added simple method for other classes to monitor...	commit \| commitdiff \| tree
2010-09-08	jprocter	trap NPE possiblity for trees that have no associated...	commit \| commitdiff \| tree
2010-09-07	jprocter	right click opens view URL popup for both parameters...	commit \| commitdiff \| tree
2010-09-07	jprocter	fix for JAL-631	commit \| commitdiff \| tree
2010-09-07	jprocter	debug warning / option dialog box display	commit \| commitdiff \| tree
2010-09-07	jprocter	kick off the first time service parameter set discovery...	commit \| commitdiff \| tree
2010-09-06	jprocter	JAL-591	commit \| commitdiff \| tree
2010-09-06	jprocter	new XML representation for web services parameters	commit \| commitdiff \| tree
2010-09-06	jprocter	pass user preset arguments to job	commit \| commitdiff \| tree
2010-09-06	jprocter	abstracted GUI to use jalview.ws.params objects (JAL...	commit \| commitdiff \| tree
2010-09-06	jprocter	abstracted GUI to use jalview.ws.params objects (JAL...	commit \| commitdiff \| tree
2010-09-03	jprocter	distinguish between userdefined parameter set job and...	commit \| commitdiff \| tree
2010-09-03	jprocter	parameter set serialization/deserialization and preset...	commit \| commitdiff \| tree
2010-09-02	jprocter	fix occasional arrayIndexOutOfBounds when sequences...	commit \| commitdiff \| tree
2010-09-02	jprocter	debugged option changed logic and layout	commit \| commitdiff \| tree
2010-09-02	jprocter	update gui in gui thread - not structure loading thread	commit \| commitdiff \| tree
2010-09-02	jprocter	increment if strings dont match	commit \| commitdiff \| tree
2010-09-02	jprocter	1.1 compatibility	commit \| commitdiff \| tree
2010-09-02	jprocter	re-implemented user prefs logic - still need to debug...	commit \| commitdiff \| tree
2010-08-31	jprocter	notes re JAL-623 and JAL-583, new api methods for adding...	commit \| commitdiff \| tree
2010-08-31	jprocter	notes re JAL-629	commit \| commitdiff \| tree
2010-08-31	jprocter	fixed various null pointer exceptions that occur when...	commit \| commitdiff \| tree
2010-08-31	jprocter	fixed various null pointer exceptions that occur when...	commit \| commitdiff \| tree
2010-08-31	jprocter	added URL display for parameters/options and debugged...	commit \| commitdiff \| tree
2010-08-31	jprocter	utilities for cloning and manipulating JabaWS parameter...	commit \| commitdiff \| tree
2010-08-27	jprocter	refactored seq/str binding methods and ensured that...	commit \| commitdiff \| tree
2010-08-27	jprocter	patch for structures with multiple models, and refactored...	commit \| commitdiff \| tree
2010-08-27	jprocter	1.2 compatibility	commit \| commitdiff \| tree
2010-08-27	jprocter	revised sequence/structure binding so one structure...	commit \| commitdiff \| tree
2010-08-27	jprocter	revised sequence/structure binding so one structure...	commit \| commitdiff \| tree
2010-08-27	jprocter	patch re http://issues.jalview.org/browse/JAL-583 ...	commit \| commitdiff \| tree
2010-08-25	jprocter	update to Jmol 12.1.5 (will become 12.2.X when released)	commit \| commitdiff \| tree
2010-08-25	jprocter	applet now requires java 1.5 minimum (jmol 12.1.xx...	commit \| commitdiff \| tree
2010-08-25	jprocter	update to Jmol 12.1.5 (will become 12.2.X when released)	commit \| commitdiff \| tree
2010-08-25	jprocter	init Jmol with 'SmarterJmolAdapter'	commit \| commitdiff \| tree
2010-08-25	jprocter	correct initing of JmolViewer to avoid security exception...	commit \| commitdiff \| tree
2010-08-25	jprocter	excluded methods related to broken Jmol applet binding...	commit \| commitdiff \| tree
2010-08-25	jprocter	excluded methods related to broken Jmol applet binding...	commit \| commitdiff \| tree
2010-08-23	jprocter	ensure template InstallAnywhere build file is always...	commit \| commitdiff \| tree
2010-08-20	jprocter	avoid race condition by setting sequence logo flag...	commit \| commitdiff \| tree
2010-08-20	jprocter	rollback to 1.58 - since excludes are unnecessary	commit \| commitdiff \| tree
2010-08-20	jprocter	broken xml ? (could be old ant issue)	commit \| commitdiff \| tree
2010-08-20	jprocter	complete the sequence-structure mapping details. *...	commit \| commitdiff \| tree
2010-08-20	jprocter	refactor jmol api so it doesn't clash with Swing component...	commit \| commitdiff \| tree
2010-08-20	jprocter	check that we have mappings before trying to broadcast...	commit \| commitdiff \| tree
2010-08-20	jprocter	(probably unnecessary) explicit inclusion of jalview...	commit \| commitdiff \| tree
2010-08-20	jprocter	refactored external structure viewer binding API calls...	commit \| commitdiff \| tree
2010-08-20	jprocter	wrapped code from URL retrieval tester as a function...	commit \| commitdiff \| tree
2010-08-20	jprocter	improved debug output when Jmol viewer creation fails	commit \| commitdiff \| tree
2010-08-20	jprocter	extend jmol binding handles selection events and add...	commit \| commitdiff \| tree
2010-08-20	jprocter	binding between JalviewLite alignment windows and some...	commit \| commitdiff \| tree
2010-08-18	jprocter	JAL-617 - new menu items for exporting current view...	commit \| commitdiff \| tree
2010-08-18	jprocter	output the eigenvector matrix in full: JAL-616	commit \| commitdiff \| tree
2010-08-18	jprocter	JAL-612 - catch hidden OOM related to filling in cut...	commit \| commitdiff \| tree
2010-08-18	jprocter	new appletlib path for jars specific to the applet	commit \| commitdiff \| tree
2010-08-18	jprocter	new appletlib path for jars specific to the applet	commit \| commitdiff \| tree
2010-08-18	jprocter	source level now 1.5	commit \| commitdiff \| tree
2010-08-18	jprocter	source level now 1.5	commit \| commitdiff \| tree
2010-08-18	jprocter	source level now 1.5	commit \| commitdiff \| tree
2010-08-18	jprocter	new appletlib path for jars specific to the applet	commit \| commitdiff \| tree
2010-08-18	jprocter	update Jmol to 12.0.6	commit \| commitdiff \| tree
2010-08-18	jprocter	1.5 annotation removal	commit \| commitdiff \| tree
2010-08-18	jprocter	update jmol instance	commit \| commitdiff \| tree
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