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JAL-3858 construct a PAE direct from float array
2023-02-22
James Procter
JAL-3858 construct a PAE direct from float array
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2023-02-22
James Procter
JAL-629 make sure we show GUI when not driven programmatically
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2023-02-22
James Procter
JAL-4095 slightly better threshold setting and todos...
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2023-02-22
James Procter
JAL-4095 magic fill behaviour is PAE specific
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2023-02-22
James Procter
JAL-3858 JAL-2381 allow different linear shading schemes...
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2023-02-22
James Procter
JAL-4027 JAL-3858 rename CUSTOM_RENDERER to CONTACT_MATRIX...
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2023-02-16
James Procter
Merge branch 'features/r2_11_2_alphafold/JAL-629' into...
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2023-02-16
James Procter
JAL-1713 don’t close an automatically created overview...
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2023-02-15
James Procter
Merge branch 'develop' into feature/JAL-1713_overviewInProject
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2023-02-15
James Procter
Passing test for JAL-4127 failing on the JAL-1713 branch
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2023-02-15
James Procter
JAL-4090 move 2.11.3 series release notes to 2.11.3...
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2023-02-13
James Procter
Merge branch 'develop' into feature/JAL-1713_overviewInProject
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2023-02-10
James Procter
JAL-3077 broken conflict resolve resulted in failing...
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2023-02-10
James Procter
Fix for JAL-4126 - don’t automatically create a threshold...
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2023-02-10
James Procter
JAL-4126 comment out closeAll - so we can visually...
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2023-02-10
James Procter
JAL-4126 failing test - colour scheme appears to be...
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2023-02-03
James Procter
JAL-1551 remove temp file in src
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2023-02-03
James Procter
Merge branch 'develop' into features/r2_11_2_alphafold...
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2023-01-31
James Procter
JAL-1713 update from Jalview 2.11.3 develop
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2023-01-25
James Procter
JAL-4116 relegate the failed to promote warning to...
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2023-01-25
James Procter
Merge branch 'new_feature/JAL-4019_ambiguous_base_coloursche...
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2023-01-24
James Procter
JAL-4090 Release 2.11.3.0 release notes and version...
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2023-01-24
James Procter
Merge branch 'merge/JAL-1988_JAL-3772+JAL-3416+JAL...
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2023-01-24
James Procter
JAL-629 hacked in --tempfac-shading - hardcoded to...
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2023-01-24
James Procter
JAL-629 suggest not breaking out of the structure processing...
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2023-01-24
James Procter
JAL-629 need to delay call to AlignFile.parse() if...
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2023-01-24
James Procter
JAL-629 don’t carry on Jalview.main if we’ve already...
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2023-01-24
James Procter
JAL-629 don’t trash user’s system property file when...
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2023-01-24
James Procter
JAL-629 don’t complain for Unary args
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2023-01-24
James Procter
JAL-629 labelled breaks are frowned upon by everyone
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2023-01-24
James Procter
Merge branch 'features/r2_11_2_alphafold/JAL-2349_JAL...
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2023-01-24
James Procter
Merge branch 'develop' (JAL-4102 2.11.2.6 patch release...
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2023-01-23
James Procter
JAL-4104 JAL-4102 update help docs with script to add...
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2023-01-23
Jim Procter
JAL-4102 whatsNew for 2.11.2.6
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2023-01-20
Jim Procter
Merge branch 'patch/JAL-4114_updated_3dbeacons_api...
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2023-01-20
Jim Procter
JAL-4114 model_page_url not required in v2.0 response
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2023-01-20
Jim Procter
JAL-4102 update date and release notes for 2.11.2.6
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2023-01-20
Jim Procter
Merge branch 'patch/JAL-4114_updated_3dbeacons_api...
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2023-01-20
Jim Procter
Merge branch 'patch/Release_2_11_2_6_Branch' into develop
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2023-01-20
Jim Procter
JAL-2353 primary ref candidates that should be promoted...
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2023-01-20
Jim Procter
JAL-4114 missing mock server response
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2023-01-20
Jim Procter
JAL-4114 only rank model qualities that are computed...
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2023-01-20
Jim Procter
JAL-4114 alphafold now marked as AB-INITIO so adjust...
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2023-01-20
Jim Procter
JAL-4114 additional warnings when PDBe doesn’t return...
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2023-01-20
Jim Procter
JAL-4114 patch REST client for changed JSON schema...
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2023-01-20
Jim Procter
JAL-4114 formatting
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2023-01-20
Jim Procter
JAL-4114 updated mock tests and responses for v2.0 api
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2022-11-30
Jim Procter
JAL-4102 bump version number
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2022-11-30
Jim Procter
JAL-4102 2.11.2.6 hotfix release notes - JAL-4101 JAL...
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2022-11-30
Ben Soares
JAL-4101 Updated Rfam* tests
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2022-11-30
Ben Soares
JAL-4101 Updated DEFAULT_RFAM_BASEURL
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2022-11-30
Jim Procter
JAL-2353 patch for Ensembl refs from uniprot - needs...
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2022-11-03
Jim Procter
JAL-3855 JAL-4095 simple picking of ranges adjacent...
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2022-10-30
Jim Procter
JAL-2349 JAL-3855 bizarre resizing exception when resizing...
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2022-10-30
Jim Procter
JAL-4091 lines to associate rows sharing same sequence...
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2022-10-30
Jim Procter
JAL-2353 patch for Ensembl refs from uniprot - needs...
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2022-10-29
Jim Procter
JAL-4094 shift+click drag up/down to resize all annotation...
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2022-10-29
Jim Procter
JAL-4091 - noodling about including the names for sequences...
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2022-10-29
Jim Procter
JAL-4090 bump version and set up release notes for...
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2022-10-29
Jim Procter
Merge branch 'features/JAL-4061_and_JAL-4062_findselectfeatu...
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2022-10-28
Jim Procter
Merge branch 'bug/JAL-4083_exceptions_for_multiple_residue_h...
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2022-10-28
Jim Procter
JAL-2349 allow contact matrix to provide labels for...
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2022-10-28
Jim Procter
JAL-4086 commented out attempt to create measurement...
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2022-10-28
Jim Procter
JAL-4089 use column selection to superpose if 4 or...
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2022-10-28
Jim Procter
JAL-2961 centerViewOn command for structure viewers...
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2022-10-28
Jim Procter
Merge branch 'features/r2_11_2_alphafold/JAL-2349_JAL...
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2022-10-26
Jim Procter
JAL-4086 quick and dirty mouseovers on ruler highlighting...
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2022-10-22
Jim Procter
JAL-2349 JAL-3855 highlight residues associated with...
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2022-10-21
Jim Procter
JAL-2349 JAL-3855 fix failing tests
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2022-10-21
Jim Procter
JAL-2349 JAL-3855 experiment masking hidden columns...
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2022-10-21
Jim Procter
JAL-4033 - heuristic threshold for pAE matrix - mark...
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2022-10-20
Jim Procter
JAL-2349 formatting/pick correct exception
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2022-10-20
Jim Procter
JAL-2349 JAL-3855 off by one and daft return
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2022-10-20
Jim Procter
JAL-2349 avoid div-by-zero when annotation height is...
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2022-10-20
Jim Procter
JAL-2349 JAL-3855 adapt renderer for AlignmentI.getContactLi...
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2022-10-20
Jim Procter
JAL-2349 JAL-3855 ContactListI.getPosition() to recover...
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2022-10-20
Jim Procter
JAL-2349 JAL-3855 experimenting with filtering columns...
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2022-10-20
Jim Procter
JAL-3855 JAL-2349 AlignmentI.getContactList takes care...
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2022-10-20
Jim Procter
JAL-4033 fix drag selections and distinguish row/columnwise...
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2022-10-20
Jim Procter
JAL-2349 (still buggy) interactive selection - time...
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2022-10-20
Jim Procter
JAL-2349 tooltip reports value from contact range
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2022-10-20
Jim Procter
JAL-2349 adjusted range calculation to be inclusive...
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2022-10-20
Jim Procter
JAL-2349 debugged click/drag and added yellow rubber...
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2022-10-20
Jim Procter
JAL-2349 JAL-3855 - interactive point-wise row/column...
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2022-10-20
Jim Procter
JAL-3855 RGB colours from the alphafold paE scale.
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2022-10-19
Jim Procter
JAL-2349 JAL-4033 refactored contact matrix geom calc...
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2022-10-17
Jim Procter
JAL-2349 JAL-3855 column selection highlighting
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2022-10-17
Jim Procter
JAL-3855 bump AF version to 3 - keep contact renderer...
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2022-10-17
Jim Procter
JAL-1551 formatting
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2022-10-17
Jim Procter
JAL-2349 JAL-3855 tests that probably should be part...
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2022-10-17
Jim Procter
JAL-3855 report download errors as errors!
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2022-10-17
Jim Procter
JAL-2349 JAL-3855 Integrate pAE retrieval in StructureFile...
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2022-10-15
Jim Procter
JAL-2349 reusable contact map holder for SequenceI...
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2022-10-15
Jim Procter
JAL-3855 2349 TODO
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2022-10-15
Jim Procter
JAL-3855 import pAE when StructureSelectionManager...
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2022-10-15
Jim Procter
JAL-3855 pAE v2 import
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2022-10-14
Jim Procter
JAL-3855 refactor the pAE retrieval code so it can...
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2022-10-14
Jim Procter
Merge branch 'features/JAL-3895_alphafoldcolours' into...
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2022-10-14
Jim Procter
Merge branch 'develop' into features/JAL-3895_alphafoldcolours
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2022-10-11
Jim Procter
Merge branch 'develop' into releases/Release_2_11_2_Branch
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