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2005-11-10	amwaterhouse	PDB is now PDBEntry	commit \| commitdiff \| tree
2005-11-10	amwaterhouse	Use StringBUffer instead of String	commit \| commitdiff \| tree
2005-11-10	amwaterhouse	Colour PDB by sequence	commit \| commitdiff \| tree
2005-11-10	amwaterhouse	PDM mapping	commit \| commitdiff \| tree
2005-11-10	amwaterhouse	Rot Canvas replaced with PDBViewer	commit \| commitdiff \| tree
2005-11-10	amwaterhouse	Mapping to PDB added	commit \| commitdiff \| tree
2005-11-08	amwaterhouse	jalview mapping	commit \| commitdiff \| tree
2005-11-08	amwaterhouse	Preliminary storeJalview	commit \| commitdiff \| tree
2005-11-08	amwaterhouse	getVersion added for Castor mapping	commit \| commitdiff \| tree
2005-11-04	amwaterhouse	Id parsing moved to Sequence	commit \| commitdiff \| tree
2005-11-04	amwaterhouse	REmove system.out	commit \| commitdiff \| tree
2005-11-04	amwaterhouse	Show full id	commit \| commitdiff \| tree
2005-11-04	amwaterhouse	Display full id in trees	commit \| commitdiff \| tree
2005-11-04	amwaterhouse	Use visible id for sorting	commit \| commitdiff \| tree
2005-11-02	amwaterhouse	Load and save Feature Colour Settings	commit \| commitdiff \| tree
2005-11-02	amwaterhouse	Java 1.5 bug note	commit \| commitdiff \| tree
2005-11-02	amwaterhouse	Allow residue prefix to dataset	commit \| commitdiff \| tree
2005-11-02	amwaterhouse	Only add first Id to suggestedIds	commit \| commitdiff \| tree
2005-11-02	amwaterhouse	Add jvsuffix and dbref to menu	commit \| commitdiff \| tree
2005-11-02	amwaterhouse	2CdbPrefix true by default	commit \| commitdiff \| tree
2005-11-02	amwaterhouse	Output jvsuffix, dbref	commit \| commitdiff \| tree
2005-11-01	amwaterhouse	Inform user about visual alignment, not dataset updates	commit \| commitdiff \| tree
2005-11-01	amwaterhouse	Wrap long description in table	commit \| commitdiff \| tree
2005-11-01	amwaterhouse	Label changes	commit \| commitdiff \| tree
2005-11-01	amwaterhouse	Show JVSuffix	commit \| commitdiff \| tree
2005-11-01	amwaterhouse	disulfide bond exceptions	commit \| commitdiff \| tree
2005-11-01	amwaterhouse	New schema, new objects	commit \| commitdiff \| tree
2005-11-01	amwaterhouse	Adjust seq limits for visual and dataset sequences	commit \| commitdiff \| tree
2005-10-31	amwaterhouse	dbPrefix and jvsuffix added	commit \| commitdiff \| tree
2005-10-31	amwaterhouse	getDisplayId changed	commit \| commitdiff \| tree
2005-10-31	amwaterhouse	jalviewClipboard added	commit \| commitdiff \| tree
2005-10-31	amwaterhouse	Display only selected features	commit \| commitdiff \| tree
2005-10-31	amwaterhouse	DBPrefix and JVSuffix added	commit \| commitdiff \| tree
2005-10-31	amwaterhouse	FeatureRenderer doenst use groups	commit \| commitdiff \| tree
2005-10-31	amwaterhouse	Sequence.getDatasetSequence().getFeatures	commit \| commitdiff \| tree
2005-10-31	amwaterhouse	Use fontmetrics to tidy up display	commit \| commitdiff \| tree
2005-10-31	amwaterhouse	Prompt before blasting	commit \| commitdiff \| tree
2005-10-31	amwaterhouse	equalsIgnoreCase CLUSTAL	commit \| commitdiff \| tree
2005-10-31	amwaterhouse	Catch numberformatexceptions	commit \| commitdiff \| tree
2005-10-31	amwaterhouse	Accession and name unbounded	commit \| commitdiff \| tree
2005-10-31	amwaterhouse	DisplayId can be dbref and or jvsuffix	commit \| commitdiff \| tree
2005-10-31	amwaterhouse	Find by displayid not used	commit \| commitdiff \| tree
2005-10-31	amwaterhouse	name and accession are unbounded	commit \| commitdiff \| tree
2005-10-27	amwaterhouse	Castor generated	commit \| commitdiff \| tree
2005-10-27	amwaterhouse	Disable featuresettings	commit \| commitdiff \| tree
2005-10-27	amwaterhouse	Moved vector features	commit \| commitdiff \| tree
2005-10-27	amwaterhouse	Allow old style groups file	commit \| commitdiff \| tree
2005-10-27	amwaterhouse	Remove system.out	commit \| commitdiff \| tree
2005-10-27	amwaterhouse	Remove static refs to applet	commit \| commitdiff \| tree
2005-10-27	amwaterhouse	MyGraphics added to enhance applet GUI	commit \| commitdiff \| tree
2005-10-26	amwaterhouse	Groups file is now feature file	commit \| commitdiff \| tree
2005-10-26	amwaterhouse	Parsing updates	commit \| commitdiff \| tree
2005-10-26	amwaterhouse	vamsasDemo new branch	commit \| commitdiff \| tree
2005-10-26	amwaterhouse	Used for sequence feature mapping	commit \| commitdiff \| tree
2005-10-07	amwaterhouse	comma separated rgb values	commit \| commitdiff \| tree
2005-10-07	amwaterhouse	getalignment method added	commit \| commitdiff \| tree
2005-10-07	amwaterhouse	Quick fix for reading sequence	commit \| commitdiff \| tree
2005-10-07	amwaterhouse	Select all cutandpaste	commit \| commitdiff \| tree
2005-10-07	amwaterhouse	Don't exit if file not found and not headless	commit \| commitdiff \| tree
2005-10-05	amwaterhouse	Sequence start end added for the time being	commit \| commitdiff \| tree
2005-10-03	amwaterhouse	Remove float width	commit \| commitdiff \| tree
2005-10-03	amwaterhouse	Request focus for new frames	commit \| commitdiff \| tree
2005-10-03	amwaterhouse	Return if no searchString	commit \| commitdiff \| tree
2005-10-03	amwaterhouse	Keylistener added to internalFrame	commit \| commitdiff \| tree
2005-10-03	amwaterhouse	Remove development code	commit \| commitdiff \| tree
2005-10-03	amwaterhouse	Remove redundancy from eclipse	commit \| commitdiff \| tree
2005-09-30	amwaterhouse	Remove redundancy from Eclipse	commit \| commitdiff \| tree
2005-09-30	amwaterhouse	Restore file before eclipse changes	commit \| commitdiff \| tree
2005-09-30	amwaterhouse	Remove redundancy in Eclipse	commit \| commitdiff \| tree
2005-09-29	amwaterhouse	Take into account scroll value	commit \| commitdiff \| tree
2005-09-28	amwaterhouse	use lower case home.png	commit \| commitdiff \| tree
2005-09-28	amwaterhouse	Applet frame name	commit \| commitdiff \| tree
2005-09-28	amwaterhouse	Set frame size each applet	commit \| commitdiff \| tree
2005-09-28	amwaterhouse	Remove latestVersion if null	commit \| commitdiff \| tree
2005-09-28	amwaterhouse	Remove latestVersion if null	commit \| commitdiff \| tree
2005-09-28	amwaterhouse	2.06	commit \| commitdiff \| tree
2005-09-28	amwaterhouse	Put clip back in	commit \| commitdiff \| tree
2005-09-28	amwaterhouse	Change font	commit \| commitdiff \| tree
2005-09-28	amwaterhouse	More features for PCA	commit \| commitdiff \| tree
2005-09-28	amwaterhouse	Wrap alignment with annotations	commit \| commitdiff \| tree
2005-09-28	amwaterhouse	New params	commit \| commitdiff \| tree
2005-09-27	amwaterhouse	Show labels in wrapped view	commit \| commitdiff \| tree
2005-09-23	amwaterhouse	Draw labels, anti alias	commit \| commitdiff \| tree
2005-09-23	amwaterhouse	Capture output as details	commit \| commitdiff \| tree
2005-09-23	amwaterhouse	Right click copy/paste popup	commit \| commitdiff \| tree
2005-09-23	amwaterhouse	Now an InternalFrame with menus	commit \| commitdiff \| tree
2005-09-22	amwaterhouse	SetAnnotationVisible - ignore if wrapped	commit \| commitdiff \| tree
2005-09-22	amwaterhouse	Create Instance of FormatAdapter	commit \| commitdiff \| tree
2005-09-22	amwaterhouse	Dont calculate conservation for nucleotides	commit \| commitdiff \| tree
2005-09-22	amwaterhouse	isNucleotide	commit \| commitdiff \| tree
2005-09-22	amwaterhouse	Create instance of FormatAdapter	commit \| commitdiff \| tree
2005-09-22	amwaterhouse	Add nucleotide names	commit \| commitdiff \| tree
2005-09-22	amwaterhouse	Display nucleotides	commit \| commitdiff \| tree
2005-09-22	amwaterhouse	Break if regex not found	commit \| commitdiff \| tree
2005-09-22	amwaterhouse	If Mac user hasnt selected file format, give warning	commit \| commitdiff \| tree
2005-09-22	amwaterhouse	Wrap alignment with annotations	commit \| commitdiff \| tree
2005-09-22	amwaterhouse	Check if filefilter is null	commit \| commitdiff \| tree
2005-09-21	amwaterhouse	Jalview	commit \| commitdiff \| tree
2005-09-21	amwaterhouse	Sequences must be aligned before PCA	commit \| commitdiff \| tree
2005-09-21	amwaterhouse	Next active Frame losing focus bug fixed	commit \| commitdiff \| tree
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