git://source.jalview.org / jalview.git / search
? search:
summary | shortlog | log | commit | commitdiff | tree
first ⋅ prev ⋅ next
JAL-974 - refactor FeatureRenderer constructor to AlignmentPanel (should probably...
2012-07-02 jprocterJAL-974 - refactor FeatureRenderer constructor to AlignmentP...
commit | commitdiff | tree
2012-07-01 jprocterJAL-1117 alleviate lock starvation
 commit | commitdiff | tree
2012-07-01 jprocterensure all annotation dependent rendering gets refreshed
 commit | commitdiff | tree
2012-06-29 jprocterJAL-1065 JAL-1066 ensure non-residue based schemes...
commit | commitdiff | tree
2012-06-29 jprocterJAL-1065 JAL-1066 allow different lookup tables for...
commit | commitdiff | tree
2012-06-26 jprocterJAL-899 added groovy support to develop branch
 commit | commitdiff | tree
2012-06-20 jprocterformatting
 commit | commitdiff | tree
2012-06-19 jprocterJAL-976 JAL-975 JAL-1119 - pass on any existing parameters...
commit | commitdiff | tree
2012-06-19 jprocterJAL-975 JAL-1119 - prototype adjustable AACons parameters...
commit | commitdiff | tree
2012-06-19 jprocterJAL-975 - doh! valid result if width matches *ungapped...
commit | commitdiff | tree
2012-06-19 jprocterJAL-975 - bespoke AACons settings object to save current...
commit | commitdiff | tree
2012-06-19 jprocterpatch for JAL-1172 ensure option's default value is...
commit | commitdiff | tree
2012-06-19 jprocterJAL-961 JAL-975 extend api to support removal of workers...
commit | commitdiff | tree
2012-06-19 jprocterJAL-975 - ensure we only submit ungapped, padded alignment...
commit | commitdiff | tree
2012-06-15 jprocterformatting
 commit | commitdiff | tree
2012-06-15 jprocterJAL-1125 option to switch between Jalview and SeqSpace...
commit | commitdiff | tree
2012-06-15 jprocterfix JAL-1122
 commit | commitdiff | tree
2012-06-15 jprocterJAL-1123 - make clear where off-by-one error was occuring...
commit | commitdiff | tree
2012-06-15 jprocterJAL-535 - refactored core PCA viewer code to viewmodel
 commit | commitdiff | tree
2012-06-15 jprocterJAL-535 refactored core code from PCA viewer to viewmodel.
 commit | commitdiff | tree
2012-06-15 jprocterJAL-1120 patch for desktop
 commit | commitdiff | tree
2012-06-15 jprocterpatch for JAL-1121 - reset button and slightly wider...
commit | commitdiff | tree
2012-06-15 jprocterJAL-535 refactoring todo
 commit | commitdiff | tree
2012-06-15 jprocterExtended IProgressIndicator with method to check if...
commit | commitdiff | tree
2012-06-15 jprocterMerge branch 'JAL-1013_pca_rna_dna' into develop
 commit | commitdiff | tree
2012-06-14 jprocterJAL-975 JAL-1002 ensure custom parameters are actually...
commit | commitdiff | tree
2012-06-14 jprocterJAL-1115 - synchronized access to group list
 commit | commitdiff | tree
2012-06-14 jprocterJAL-976 - make sure annotation panel is updated to...
commit | commitdiff | tree
2012-06-14 jprocterJAL-961 JAL-976 kill any existing AACon job if a new...
commit | commitdiff | tree
2012-06-14 jprocterJAL-1003 visual delay when running a sequence or alignment...
commit | commitdiff | tree
2012-06-14 jprocterJAL-961 JAL-976 tweaked way that AACons client is registered...
commit | commitdiff | tree
2012-06-14 jprocterformatting
 commit | commitdiff | tree
2012-06-14 jprocterformatting
 commit | commitdiff | tree
2012-06-14 jprocterJAL-1118 - hack to try and get rid of flicker. consider...
commit | commitdiff | tree
2012-06-14 jprocterJAL-1118 WIP - flag to mark if image buffer has just...
commit | commitdiff | tree
2012-06-14 jprocterJAL-1115 trap exception arising from race condition...
commit | commitdiff | tree
2012-06-14 jprocterJAL-968 javadoc and return flag indicating if any of...
commit | commitdiff | tree
2012-06-14 jprocterJAL-961 ensure we only add one instance of a worker...
commit | commitdiff | tree
2012-06-14 jprocterJAL-961 potentially helpful println statements when...
commit | commitdiff | tree
2012-06-13 jprocterJAL-1115 refactor base collection for Alignment from...
commit | commitdiff | tree
2012-06-13 jprocterJAL-1116 - location where vamsas sync failure occurs
 commit | commitdiff | tree
2012-06-13 jprocterjavatidy
 commit | commitdiff | tree
2012-06-12 jprocterJAL-1115 refactor reordering code operating directly...
commit | commitdiff | tree
2012-06-12 jprocterJAL-1115 refactor base collection for Alignment from...
commit | commitdiff | tree
2012-06-12 jprocterJAL-1115 - use local reference for annotation row
 commit | commitdiff | tree
2012-06-12 jprocterJAL-961, JAL-1115 - pending test to ensure only one...
commit | commitdiff | tree
2012-06-07 jprocterjavatidy
 commit | commitdiff | tree
2012-06-07 jprocterJAL-967, JAL-1114, JAL-1115 more concurrent access...
commit | commitdiff | tree
2012-06-07 jprocterjavatidy
 commit | commitdiff | tree
2012-06-07 jprocterfix for bug introduced with commit:b81d4d7d46ea8b1c89df086fb...
commit | commitdiff | tree
2012-06-07 jprocterjavatidy
 commit | commitdiff | tree
2012-06-07 jprocterJAL-967, JAL-1114, JAL-1115 - modified render and calculatio...
commit | commitdiff | tree
2012-06-07 jprocterJAL-976 ensure job id gets written out if there's an...
commit | commitdiff | tree
2012-06-04 jprocterjavatidy
 commit | commitdiff | tree
2012-05-31 jprocterjavatidy
 commit | commitdiff | tree
2012-05-31 jprocterformatting
 commit | commitdiff | tree
2012-05-30 jprocterJAL-969 - refactor colourscheme machinery from GUI...
commit | commitdiff | tree
2012-05-30 jprocterJAL-1109 JAL-1065 resolve t-coffee score scheme by...
commit | commitdiff | tree
2012-05-30 jprocterupdated schema to store and recover belowAlignment...
commit | commitdiff | tree
2012-05-30 jprocterJAL-1114 - refactor methods handling Vectors and Hashtables...
commit | commitdiff | tree
2012-05-30 jprocterformatting
 commit | commitdiff | tree
2012-05-30 jprocterformatting
 commit | commitdiff | tree
2012-05-24 jprocterTODO: JAL-1108
 commit | commitdiff | tree
2012-05-24 jprocterJAL-1078 - removed 'Load Score File' menu item and...
commit | commitdiff | tree
2012-05-24 jprocterJAL-1065 per sequence and per-alignment scores added...
commit | commitdiff | tree
2012-05-24 jprocterJAL-1065 - ensure null entries in annotation row so...
commit | commitdiff | tree
2012-05-24 jproctertodo: JAL-1105
 commit | commitdiff | tree
2012-05-24 jproctertodo: JAL-1108
 commit | commitdiff | tree
2012-05-24 jprocterensure annotation isn't added twice - note - this could...
commit | commitdiff | tree
2012-05-24 jprocterJAL-1107 - documentation explaining '*' and '+' in...
commit | commitdiff | tree
2012-05-24 jprocterpatch for occasional NPE when applet is quit
 commit | commitdiff | tree
2012-05-23 jprocterJAL-1078 - extend applet cut'n'paste features/annotation...
commit | commitdiff | tree
2012-05-23 jprocterJAL-1067 report any warning messages to user
 commit | commitdiff | tree
2012-05-23 jprocterTODO for JAL-976
 commit | commitdiff | tree
2012-05-23 jproctertodo for JAL-1106
 commit | commitdiff | tree
2012-05-23 jprocterJAL-1066,JAL-1068,JAL-961 - use alignment annotation...
commit | commitdiff | tree
2012-05-23 jprocterJAL-1067, JAL-1105 - refactor parser to fit Jalview...
commit | commitdiff | tree
2012-05-23 jprocterJAL-961 - annotatable datamodel objects can be queried...
commit | commitdiff | tree
2012-05-23 jprocterJAL-1102 todos and status updates when data is added
 commit | commitdiff | tree
2012-05-23 jproctertodo JAL-1104 : functions to refactor
 commit | commitdiff | tree
2012-05-23 jproctertodo: blocked by JAL-1104
 commit | commitdiff | tree
2012-05-23 jprocterJAL-958 - ensure logo is rendered even if consensus...
commit | commitdiff | tree
2012-05-22 jprocterupdate the copy constructor
 commit | commitdiff | tree
2012-05-22 jprocterJAL-1065,JAL-1066 propagated notification of colourscheme...
commit | commitdiff | tree
2012-05-22 jprocterJAL-1065,JAL-1066 - propagated 863467bf6c59c0bc5368c8f3a03d9...
commit | commitdiff | tree
2012-05-22 jprocterMerge remote-tracking branch 'origin/Tcoffee_JAL-1065...
commit | commitdiff | tree
2012-05-16 jprocterwarning dialog - fixes JAL-1099
 commit | commitdiff | tree
2012-05-16 jprocterfixed JAL-1086: pass column index so colourscheme profile...
commit | commitdiff | tree
2012-05-16 jprocterJAL-958 - don't try to draw all zero profiles
 commit | commitdiff | tree
2012-05-16 jprocterJAL-958 JAL-1086 formatting and remove old code
 commit | commitdiff | tree
2012-05-14 jprocterpack before displaying splashscreen to ensure its preferred...
commit | commitdiff | tree
2012-05-14 jprocterformatting
 commit | commitdiff | tree
2012-05-14 jprocterJAL-1097 - ensure replace comma for semicolon always...
commit | commitdiff | tree
2012-05-14 jprocterMerge branch 'JAL-972-jdas' into develop
 commit | commitdiff | tree
2012-05-14 jprocterJAL-1075
 commit | commitdiff | tree
2012-05-14 jprocterJAL-1061,JAL-1075 - first pass at implementing sequence...
commit | commitdiff | tree
2012-05-14 jprocterclean up old commented code
 commit | commitdiff | tree
2012-05-14 jprocterJAL-1095 - todo
 commit | commitdiff | tree
2012-05-14 jprocterjavadoc
 commit | commitdiff | tree
2012-05-11 jprocterJAL-972 workaround for working out source URL for pre...
commit | commitdiff | tree
next