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2005-03-08	amwaterhouse	only set graphics black once at beginning of text	commit \| commitdiff \| tree
2005-03-08	amwaterhouse	dont color gaps in sequence features	commit \| commitdiff \| tree
2005-03-08	amwaterhouse	if resIndex > 19 return color.white	commit \| commitdiff \| tree
2005-02-22	amwaterhouse	add titles	commit \| commitdiff \| tree
2005-02-22	amwaterhouse	add history for cut and paste	commit \| commitdiff \| tree
2005-02-22	amwaterhouse	updated help files	commit \| commitdiff \| tree
2005-02-21	amwaterhouse	images moved	commit \| commitdiff \| tree
2005-02-21	amwaterhouse	note of user_defined_colours added	commit \| commitdiff \| tree
2005-02-21	amwaterhouse	image moved	commit \| commitdiff \| tree
2005-02-21	amwaterhouse	Sets USER_DEFINED_COLOUR as property	commit \| commitdiff \| tree
2005-02-21	amwaterhouse	images in image folder	commit \| commitdiff \| tree
2005-02-21	amwaterhouse	Updated help pages	commit \| commitdiff \| tree
2005-02-18	amwaterhouse	treepanel is now internalframe, has a menu	commit \| commitdiff \| tree
2005-02-18	amwaterhouse	show sequence features is false by default	commit \| commitdiff \| tree
2005-02-18	amwaterhouse	tree is printable	commit \| commitdiff \| tree
2005-02-18	amwaterhouse	treepanel is now internalframe	commit \| commitdiff \| tree
2005-02-18	amwaterhouse	featuresAdded = false	commit \| commitdiff \| tree
2005-02-16	amwaterhouse	wrap alignment id drawing bug fixed	commit \| commitdiff \| tree
2005-02-16	amwaterhouse	Save as jpg added	commit \| commitdiff \| tree
2005-02-15	amwaterhouse	Fix bug when creating treepanel	commit \| commitdiff \| tree
2005-02-15	amwaterhouse	abovePIDThreshold added to viewport	commit \| commitdiff \| tree
2005-02-15	amwaterhouse	no action if supplied colour isnull	commit \| commitdiff \| tree
2005-02-15	amwaterhouse	catch any pid or conservation related bugs here	commit \| commitdiff \| tree
2005-02-15	amwaterhouse	add applytoallgroups colouring option	commit \| commitdiff \| tree
2005-02-11	amwaterhouse	must add all features even if start and end res are...	commit \| commitdiff \| tree
2005-02-11	amwaterhouse	move sequences up and down	commit \| commitdiff \| tree
2005-02-11	amwaterhouse	add VK_F key, up down	commit \| commitdiff \| tree
2005-02-11	amwaterhouse	end of seq adjustments	commit \| commitdiff \| tree
2005-02-11	amwaterhouse	dont add new seqs to group	commit \| commitdiff \| tree
2005-02-11	amwaterhouse	watch out for end of seq in findposition	commit \| commitdiff \| tree
2005-02-11	amwaterhouse	update start and end res when copying	commit \| commitdiff \| tree
2005-02-11	amwaterhouse	add control a key to select all	commit \| commitdiff \| tree
2005-02-11	amwaterhouse	bug fixed if featureEnd is beyond end of sequence	commit \| commitdiff \| tree
2005-02-10	amwaterhouse	watch end of sequence when asking for (start, end)	commit \| commitdiff \| tree
2005-02-10	amwaterhouse	dont add new sequences to null groups!	commit \| commitdiff \| tree
2005-02-10	amwaterhouse	change of label text	commit \| commitdiff \| tree
2005-02-10	amwaterhouse	cut and paste now in main menu	commit \| commitdiff \| tree
2005-02-10	amwaterhouse	trimmed down	commit \| commitdiff \| tree
2005-02-10	amwaterhouse	Key listener works!!	commit \| commitdiff \| tree
2005-02-10	amwaterhouse	Cut and paste implemented	commit \| commitdiff \| tree
2005-02-10	amwaterhouse	check that we're not off the end of a sequence	commit \| commitdiff \| tree
2005-02-10	amwaterhouse	check that mouse is over sequence if unaligned	commit \| commitdiff \| tree
2005-02-10	amwaterhouse	edit sequence name method	commit \| commitdiff \| tree
2005-02-10	amwaterhouse	remove try catch loop	commit \| commitdiff \| tree
2005-02-10	amwaterhouse	isAligned method added, check before making tree	commit \| commitdiff \| tree
2005-02-10	amwaterhouse	isAligned method added	commit \| commitdiff \| tree
2005-02-10	amwaterhouse	removed	commit \| commitdiff \| tree
2005-02-09	amwaterhouse	Start the thread	commit \| commitdiff \| tree
2005-02-09	amwaterhouse	Display tooltip updated	commit \| commitdiff \| tree
2005-02-09	amwaterhouse	Correct number of ids is drawn	commit \| commitdiff \| tree
2005-02-09	amwaterhouse	Fixed display bugs when feature is off the screen	commit \| commitdiff \| tree
2005-02-09	amwaterhouse	Blasts asynchronously	commit \| commitdiff \| tree
2005-02-08	amwaterhouse	Set property returns key	commit \| commitdiff \| tree
2005-02-08	amwaterhouse	Looks for missing ids using BlastClient	commit \| commitdiff \| tree
2005-02-08	amwaterhouse	new class	commit \| commitdiff \| tree
2005-02-07	amwaterhouse	Properties bug fixed	commit \| commitdiff \| tree
2005-02-07	amwaterhouse	New class	commit \| commitdiff \| tree
2005-02-07	amwaterhouse	Use Cache.getProperty	commit \| commitdiff \| tree
2005-02-07	amwaterhouse	Settooltip for sequence feature	commit \| commitdiff \| tree
2005-02-07	amwaterhouse	load properties on startup	commit \| commitdiff \| tree
2005-02-07	amwaterhouse	Properties added	commit \| commitdiff \| tree
2005-02-07	amwaterhouse	Now displays sequence features	commit \| commitdiff \| tree
2005-02-07	amwaterhouse	New class for fetching sequence features	commit \| commitdiff \| tree
2005-02-04	amwaterhouse	SequenceFeature display added	commit \| commitdiff \| tree
2005-02-02	amwaterhouse	Modified for wrapAlignement	commit \| commitdiff \| tree
2005-02-02	amwaterhouse	Remove test image	commit \| commitdiff \| tree
2005-02-02	amwaterhouse	Modified for wrappingAlignment	commit \| commitdiff \| tree
2005-02-01	amwaterhouse	Apply to all groups method added	commit \| commitdiff \| tree
2005-02-01	amwaterhouse	Update PID or conservationSlider if necessary	commit \| commitdiff \| tree
2005-02-01	amwaterhouse	Bugs in column selection fixed	commit \| commitdiff \| tree
2005-02-01	amwaterhouse	Conservation and PID colouring methods updated, also...	commit \| commitdiff \| tree
2005-02-01	amwaterhouse	Conservation and PID colouring methods updated	commit \| commitdiff \| tree
2005-02-01	amwaterhouse	Secondary panel is hidden for the moment	commit \| commitdiff \| tree
2005-02-01	amwaterhouse	Enable wrap menu item	commit \| commitdiff \| tree
2005-02-01	amwaterhouse	Ability to apply to all groups added	commit \| commitdiff \| tree
2005-02-01	amwaterhouse	No need for drawableSequence	commit \| commitdiff \| tree
2005-02-01	amwaterhouse	Clustal colours now work	commit \| commitdiff \| tree
2005-01-28	amwaterhouse	New layout, works 1.4 and 1.5	commit \| commitdiff \| tree
2005-01-27	amwaterhouse	correct border width	commit \| commitdiff \| tree
2005-01-27	amwaterhouse	JavaHelp files added	commit \| commitdiff \| tree
2005-01-27	amwaterhouse	ColourSchemeKey now in documentation	commit \| commitdiff \| tree
2005-01-25	amwaterhouse	system.exit or destroy if applet or app	commit \| commitdiff \| tree
2005-01-25	amwaterhouse	change order of menuitems	commit \| commitdiff \| tree
2005-01-25	amwaterhouse	don't system.ext	commit \| commitdiff \| tree
2005-01-25	amwaterhouse	now has key listener	commit \| commitdiff \| tree
2005-01-25	amwaterhouse	clustalColour bug fixed, clear selection	commit \| commitdiff \| tree
2005-01-25	amwaterhouse	extends Applet	commit \| commitdiff \| tree
2005-01-24	amwaterhouse	Adds regex.jar to classpath	commit \| commitdiff \| tree
2005-01-24	amwaterhouse	warning! this is obfuscated	commit \| commitdiff \| tree
2005-01-24	amwaterhouse	bug in compare fixed	commit \| commitdiff \| tree
2005-01-24	amwaterhouse	returns color.white if the underlying colourscheme...	commit \| commitdiff \| tree
2005-01-24	amwaterhouse	creates new groups when selecting branches of the tree	commit \| commitdiff \| tree
2005-01-24	amwaterhouse	now uses 1.1 friendly regex	commit \| commitdiff \| tree
2005-01-24	amwaterhouse	Clear selection when deleting all groups	commit \| commitdiff \| tree
2005-01-24	amwaterhouse	Allow removal of colour when deleting groups	commit \| commitdiff \| tree
2005-01-21	amwaterhouse	remove a few imports	commit \| commitdiff \| tree
2005-01-21	amwaterhouse	Nucleotide colours added	commit \| commitdiff \| tree
2005-01-21	amwaterhouse	New colourScheme	commit \| commitdiff \| tree
2005-01-21	amwaterhouse	Create group from search added	commit \| commitdiff \| tree
2005-01-21	amwaterhouse	Delete groups added, nucleotide color added	commit \| commitdiff \| tree
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