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Merge branch 'feature/JAL-3063jaxbNoCastor' into feature/JAL-3141_Create_a_backup_whe...
2018-05-01
Jim Procter
JAL-2223 JAL-2781 JAL-2780 JAL-2946 JAL-2906 release...
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2018-05-01
Jim Procter
JAL-2906 reformat release notes
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2018-05-01
Jim Procter
JAL-2906 typo
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2018-05-01
Jim Procter
JAL-2944 revised docs and structure chooser screen...
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2018-05-01
Jim Procter
JAL-2899 colouring moved from SwingWorker to a background...
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2018-04-30
Jim Procter
Merge branch 'bug/JAL-2899' into releases/Release_2_10_4_Branch
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2018-04-30
Jim Procter
JAL-2906 release 2.10.4 on 1st May 2018
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2018-04-25
Jim Procter
Merge branch 'features/JAL-2944_openStructuresInSelectedView...
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2018-04-11
Jim Procter
JAL-2946 catch unexpected SIFTS mapping exceptions...
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2018-04-09
Jim Procter
JAL-2944 ’new view’ and ‘add to view’ button rather...
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2018-04-09
Jim Procter
JAL-1847 superpose checkbox in structure chooser
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2018-04-09
Jim Procter
JAL-1847 JAL-2944 make superposition step a configurable...
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2018-04-06
Jim Procter
failing test for JAL-2223
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2018-04-05
Jim Procter
JAL-2945 resolve model as PDB file. Need to verify...
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2018-04-05
Jim Procter
JAL-2945 failing test for structure mapping
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2018-04-05
Jim Procter
JAL-2945 formatting
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2018-04-05
Jim Procter
JAL-2945 provide access to last highlighted results
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2018-04-05
Jim Procter
JAL-2944 open selected structures in existing or a...
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2018-04-05
Jim Procter
JAL-2944 combo box to pick which viewer to load structures...
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2018-04-05
Jim Procter
JAL-2944 methods to check existence and get a title...
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2018-04-05
Jim Procter
JAL-2944 allow StructureViewer proxy to be created...
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2018-04-05
Jim Procter
JAL-2944 get viewer’s title via toString()
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2018-04-05
Jim Procter
JAL-2944 expose UI update methods in api
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2018-04-05
Jim Procter
JAL-2944 remove modal prompt logic and expose methods...
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2018-04-05
Jim Procter
JAL-2944 pull up structure viewer discovery routine...
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2018-03-21
Jim Procter
JAL-2754 reinstate PA import from bad conflict merge
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2018-03-21
Jim Procter
JAL-2754 remove duplicate classpath entry again
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2018-03-21
Jim Procter
Merge branch 'releases/Release_2_10_4_Branch' into...
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2018-03-21
Jim Procter
Merge branch 'patch/JAL-2754_patch2104forJava8' into...
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2018-03-21
Jim Procter
JAL-2754 don’t use deprecated api for getting font...
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2018-03-21
Jim Procter
JAL-2754 fix eclipse compilation error about referencing...
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2018-03-21
Jim Procter
Merge branch 'patch/JAL-2754_patch2104forJava8' into...
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2018-03-21
Jim Procter
Merge branch 'patch/JAL-2754_patch2104forJava8' into...
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2018-03-21
Jim Procter
JAL-2754 dont put '<>' in <echo> text!
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2018-03-21
Jim Procter
Merge branch 'releases/Release_2_10_4_Branch' into...
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2018-03-21
Jim Procter
Merge branch 'patch/JAL-2754_patch2104forJava8' into...
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2018-03-21
Jim Procter
JAL-2754 clean up proguard path spec and config variables
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2018-03-14
Jim Procter
JAL-2930 JAL-2924 JAL-2913 JAL-2926 JAL-2906 2.10.4...
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2018-03-07
Jim Procter
Merge branch 'releases/Release_2_10_4_Branch' into...
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2018-02-28
Jim Procter
Merge branch 'releases/Release_2_10_4_Branch_merged_JAL...
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2018-02-27
Jim Procter
JAL-2759 release notes for 2.10.4
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2018-02-27
Jim Procter
Merge branch 'feature/JAL-2759' into merge/JAL-2759_2104
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2018-02-27
Jim Procter
fix for JAL-2922 - update states all at once and then...
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2018-02-26
Jim Procter
JAL-2920 parse variation and original elements of the...
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2018-02-26
Jim Procter
Merge branch 'feature/JAL-984splitAdjuster' into releases...
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2018-02-26
Jim Procter
JAL-984 remove all references to idwidth.gif - in build...
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2018-02-23
Jim Procter
JAL-2885 release notes
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2018-02-23
Jim Procter
Merge branch 'features/JAL-2885UniprotHttps' into releases...
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2018-02-23
Jim Procter
JAL-2885 xfam https
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2018-02-23
Jim Procter
JAL-2885 XFAM_DOMAIN->XFAM_BASEURL
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2018-02-23
Jim Procter
JAL-2885 Ensembl* -> https
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2018-02-23
Jim Procter
JAL-2885 ENSEMBL-DOMAIN -> ENSEMBL-BASEURL
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2018-02-23
Jim Procter
JAL-2885 renamed base URL getter from getDomain..
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2018-02-22
Jim Procter
Merge branch 'feature/JAL-984splitAdjuster' into releases...
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2018-02-22
Jim Procter
JAL-984 ID width adjuster needs to be white !
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2018-02-22
Jim Procter
JAL-2666 release notes
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2018-02-22
Jim Procter
Merge branch 'bug/JAL-2666' into releases/Release_2_10_4_Branch
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2018-02-22
Jim Procter
Merge branch 'feature/JAL-984splitAdjuster' into releases...
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2018-02-22
Jim Procter
JAL-984 remove all references to idwidth.gif and use...
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2018-02-22
Jim Procter
JAL-2906 typo fixes
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2018-02-22
Jim Procter
JAL-984 release notes
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2018-02-22
Jim Procter
Merge branch 'feature/JAL-984splitAdjuster' into releases...
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2018-02-22
Jim Procter
JAL-294 remove unneeded paint() method
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2018-02-22
Jim Procter
JAL-984 remove commented/unnecessary if clause
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2018-02-21
Jim Procter
JAL-2906 release notes for 2.10.4
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2018-02-21
Jim Procter
Merge branch 'bug/JAL-2778again' into releases/Release_2_10_...
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2018-02-21
Jim Procter
JAL-2778 reinstate transparent windows to avoid ugly...
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2018-02-20
Jim Procter
Merge branch 'releases/Release_2_10_4_Branch' into...
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2018-02-20
Jim Procter
Merge branch 'bugs/JAL-2780_JAL-2781_pdbnegativenums...
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2018-02-15
Jim Procter
Merge branch 'develop' into releases/Release_2_10_4_Branch
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2018-02-15
Jim Procter
JAL-2906 bump release version and cut new release note...
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2018-02-13
Jim Procter
JAL-2780 scan all test IDs before testing and reporting...
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2018-02-13
Jim Procter
JAL-2780 SequenceI.findFeatures takes column numbers...
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2018-02-13
Jim Procter
JAL-2780 JAL-2781 don’t create a mapping if sequence...
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2018-02-13
Jim Procter
JAL-2780 JAL-2781 only create a mapping entry or write...
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2018-02-13
Jim Procter
JAL-2781 JAL-2780 include sequence start number when...
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2018-02-13
Jim Procter
JAL-2781 ensure Trim is disabled before test starts
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2018-02-13
Jim Procter
JAL-2781 refactor ‘trim retrieved sequence’ preference...
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2018-02-13
Jim Procter
JAL-2781 null local siftsClient variable if exception...
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2018-02-13
Jim Procter
JAL-2781 refactor StructureSelectionManager.siftsClient...
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2018-02-13
Jim Procter
JAL-2781 FIXME: value of sourceType parameter always...
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2018-02-13
Jim Procter
JAL-2781 refactor possibly non-functional ‘extract...
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2018-02-13
Jim Procter
JAL-2781 tidy up comments on getMapping/computeMapping
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2018-02-13
Jim Procter
JAL-2781 report exactly which residues do not receive...
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2018-02-13
Jim Procter
JAL-2905 added additional jvmarg for testng task conditional...
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2018-02-12
Jim Procter
JAL-2780 JAL-2781 extra column in mapping array
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2018-02-12
Jim Procter
JAL-2904 JAL-2780 JAL-2781 update JmolCommandsTest...
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2018-02-12
Jim Procter
JAL-2780 JAL-2781 ahem - add a semicolon if there isn...
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2018-02-12
Jim Procter
JAL-2780 use value of ’UNASSIGNED’ constant in assert...
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2018-02-12
Jim Procter
JAL-2904 replaced assert for (getEnd()-getStart()+1...
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2018-02-11
Jim Procter
JAL-2781 use SIFTs mapping rather than maxChain AlignSeq...
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2018-02-11
Jim Procter
JAL-2780 JAL-2781 use PDBe numbering to map between...
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2018-02-11
Jim Procter
JAL-2781 mark aligned positions via StructureMapping...
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2018-02-11
Jim Procter
JAL-2780 JAL-2781 include a Mapping object in StructureMappi...
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2018-02-11
Jim Procter
JAL-2780 JAL-2781 UNASSIGNED positions marked as Integer.Min
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2018-02-11
Jim Procter
JAL-2781 fix test data for full length annotation
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2018-02-09
Jim Procter
Use the “PDBe” or “PDB” numbering (starts from 1, correspond...
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2018-02-09
Jim Procter
JAL-2780 JAL-2781 should always ensure SIFTS mappings...
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2018-02-07
Jim Procter
JAL-2780 JAL-2781 run sequentially and ensure windows...
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2018-02-07
Jim Procter
JAL-2780 JAL-2891 clear all windows always beforeTest...
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