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Merge branch 'develop' into merge/JAL-3978+JAL-3553+develop+JAL-3989
2022-02-16
Jim Procter
JAL-3746 release notes.. in progress
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2022-02-16
Jim Procter
JAL-3551 - wrap pair_fit with undo_disable and undo_enable
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2022-02-16
Jim Procter
JAL-3837 GPL license on splashscreen (finally !) and...
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2022-02-16
Jim Procter
JAL-3949 report Pymol XMLRPC port via log.info
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2022-02-16
Jim Procter
Merge branch 'develop' into releases/Release_2_11_2_Branch
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2022-02-15
Jim Procter
JAL-1761 backbone type parameter for configuring which...
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2022-02-15
Jim Procter
JAL-1761 need to pass molecule type when generating...
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2022-02-15
Jim Procter
JAL-3551 patch test for altloc handling atom spec in...
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2022-02-15
Jim Procter
JAL-1761 need to pass molecule type when generating...
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2022-02-15
Jim Procter
JAL-3906 use indicate to highlight current mousedOver...
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2022-02-15
Jim Procter
JAL-3746 update release date to later in Feb 2022
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2022-02-15
Jim Procter
JAL-3551 pymol documentation
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2022-02-14
Jim Procter
Merge branch 'task/r_2_11_2/JAL-3956_alphaFill_authoritative...
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2022-02-14
Jim Procter
JAL-3551
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2022-02-14
Jim Procter
JAL-3956 - PDBEntry objects constructed from 3D-Beacons...
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2022-02-12
Jim Procter
Merge branch 'update/JAL-3949_jalview_bin_Console_to_cure_sa...
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2022-02-11
Jim Procter
Merge branch 'develop' into releases/Release_2_11_2_Branch
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2022-02-11
Jim Procter
JAL-3949 increase command line ops test timeout
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2022-02-11
Jim Procter
Merge branch 'develop' into releases/Release_2_11_2_Branch
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2022-02-11
Jim Procter
JAL-3949 ensure Jalview command line ops setup actually...
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2022-02-11
Jim Procter
Merge branch 'develop' into releases/Release_2_11_2_Branch
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2022-02-11
Jim Procter
Merge branch 'update/JAL-3949_jalview_bin_Console_to_cure_sa...
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2022-02-11
Jim Procter
JAL-3931 fix - escape % symbols after urlencoding
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2022-02-11
Jim Procter
JAL-3949 - refactor logging from jalview.bin.Cache...
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2022-02-10
Jim Procter
Merge branch 'bug/JAL-3523_cwd_not_preserved' into...
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2022-02-07
Jim Procter
JAL-3186 remove ‘Variable Colour’ from the sequence...
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2022-02-04
Jim Procter
Merge branch 'bug/JAL-3806_mappingCoversSequence_for2112...
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2022-02-04
Jim Procter
JAL-3806 JAL-3725 update tests since CDS mappings now...
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2022-02-04
Jim Procter
JAL-3806 require mapping extent covers both sequence...
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2022-02-03
Jim Procter
JAL-3806 use the covers() test for each selected sequence...
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2022-02-03
Jim Procter
JAL-3806 use same logic as for mouse over highlighting...
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2022-02-03
Jim Procter
JAL-3806 todo - problem seems to be Protein:Many CDS...
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2022-02-03
Jim Procter
JAL-2305 comments re testFindXrefSequences_withFetch...
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2022-01-28
Jim Procter
JAL-3137 tests are for linux only
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2022-01-28
Jim Procter
Merge branch 'merge/develop_JAL-3725' into develop
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2022-01-27
Jim Procter
Merge branch 'bug/JAL-3633_read_proxy_settings_from_jalview_...
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2022-01-26
Jim Procter
Merge branch 'develop' into releases/Release_2_11_2_Branch
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2022-01-26
Jim Procter
JAL-3763 (for whatever reason) need to increase timeout...
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2022-01-26
Jim Procter
Merge branch 'develop' into releases/Release_2_11_2_Branch
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2022-01-26
Jim Procter
JAL-3746 note about adding JAL-3700,JAL-3751,JAL-3763...
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2022-01-26
Jim Procter
Merge branch 'merge/develop_task/JAL-3763_newDatasetForCds...
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2022-01-26
Jim Procter
JAL-3763 (for whatever reason) need to increase timeout...
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2022-01-26
Jim Procter
Merge branch 'task/JAL-3763_newDatasetForCds' into...
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2022-01-26
Jim Procter
JAL-3806 JAL-3725 propagate relaxed criteria for stop...
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2022-01-26
Jim Procter
Merge branch 'develop' into releases/Release_2_11_2_Branch
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2022-01-26
Jim Procter
Merge branch 'releases/Release_2_11_1_Branch'
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2022-01-18
Jim Procter
JAL-3940 update 2.11.2 release notes for 2.11.1.7 patch...
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2022-01-18
Jim Procter
JAL-3940 errant heading in release notes..
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2022-01-18
Jim Procter
Merge branch 'patch/r2_11_1_branch_JAL-3703_closing_files...
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2022-01-17
Jim Procter
JAL-3703 patch Windows save file test for 2.11.1 codebase
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2022-01-17
Jim Procter
Merge branch 'patch/r2_11_1_branch_JAL-3703_closing_files...
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2022-01-17
Jim Procter
JAL-3940 fix issues in release notes
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2022-01-17
Jim Procter
JAL-3940 update 2.11.2 release notes for 2.11.1.7 patch...
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2022-01-17
Jim Procter
JAL-3940 bump version and update release notes - release...
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2022-01-17
Jim Procter
JAL-3940 update release notes for JAL-3702,JAL-3935...
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2022-01-17
Jim Procter
Merge branch 'develop' into releases/Release_2_11_2_Branch
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2022-01-17
Jim Procter
JAL-3746 possible release date 1st Feb 2022
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2022-01-17
Jim Procter
JAL-3746 Release notes for patch JAL-3702 JAL-3915
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2022-01-17
Jim Procter
Merge branch 'bug/JAL-3703_saving_a_file_in_Windows_10_fails...
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2022-01-06
Jim Procter
Merge branch 'develop' into releases/Release_2_11_2_Branch
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2022-01-06
Jim Procter
JAL-3746 update release history for 2.11.1.5 and 2...
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2022-01-06
Jim Procter
JAL-3934 update whats new
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2022-01-06
Jim Procter
Merge branch 'critical/JAL-3933_log4j_update_for_develop_bra...
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2022-01-06
Jim Procter
Merge branch 'task/JAL-3934_update_log4j_again' into...
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2022-01-06
Jim Procter
JAL-3934 trigger patch release for log4j version bump
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2021-12-22
Jim Procter
Merge branch 'releases/Release_2_11_1_Branch'
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2021-12-20
Jim Procter
JAL-3842 remove replacement tokens in html text - not...
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2021-12-20
Jim Procter
JAL-3842 patch what’s new text
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2021-12-20
Jim Procter
JAL-3842 release 2.11.1.5 release notes
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2021-12-20
Jim Procter
Merge branch 'critical/JAL-3933_log4shell_mitigation...
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2021-12-15
Jim Procter
JAL-3933 remove obsolete Castor logging configuration
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2021-12-15
Jim Procter
JAL-3933 configure root logger console appender to...
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2021-12-15
Jim Procter
JAL-3933 remove obsolete Castor logging configuration
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2021-12-15
Jim Procter
JAL-3933 configure root logger console appender to...
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2021-12-13
Jim Procter
Merge branch 'develop' into releases/Release_2_11_2_Branch
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2021-12-13
Jim Procter
JAL-3829 isCanonical should by default be false - ensure...
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2021-12-13
Jim Procter
Merge branch 'develop' into releases/Release_2_11_2_Branch
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2021-12-13
Jim Procter
JAL-3855 JAL-3829 don’t need to make up alphafold model...
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2021-12-13
Jim Procter
Merge branch 'develop' into releases/Release_2_11_2_Branch
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2021-12-13
Jim Procter
JAL-3929 preserve lowercase pdbid in group name for...
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2021-12-08
Jim Procter
Merge branch 'to_merge/r2_11_2/JAL-3904_improved_alignpanelA...
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2021-12-08
Jim Procter
JAL-3551 pymol docs - work in progress
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2021-12-08
Jim Procter
JAL-3929 don’t use the url encoded pdbId in feature...
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2021-12-08
Jim Procter
JAL-3616 update messages/tooltips/menu items to use...
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2021-12-08
Jim Procter
JAL-3551 JAL-3931 view pymol commands/responses in...
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2021-12-08
Jim Procter
JAL-3931 remove % and - from ids so Pymol doesn’t strip...
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2021-12-08
Jim Procter
JAL-3929 URLencode pdbid to remove problematic characters...
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2021-12-02
Jim Procter
JAL-3904 use new AlignPanel API method
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2021-12-02
Jim Procter
JAL-3904 simple method to make an alignPanel the currently...
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2021-11-19
Jim Procter
JAL-3926 disable autosearch by default
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2021-11-08
Jim Procter
Merge branch 'develop' into releases/Release_2_11_2_Branch
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2021-11-08
Jim Procter
JAL-3855 verify pdb suffix is preserved when locally...
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2021-11-08
Jim Procter
JAL-3855 JAL-1731 reuse the StructureViewer.fetchPdbFile...
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2021-11-08
Jim Procter
JAL-3855 try harder to ignore DNA/RNA only structures...
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2021-11-08
Jim Procter
JAL-3921 wait around until session file has been written
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2021-11-05
Jim Procter
Merge branch 'develop' into releases/Release_2_11_2_Branch
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2021-11-05
Jim Procter
JAL-3829 remove duplicate IDs in 3DBeacons generated...
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2021-11-05
Jim Procter
Merge branch 'develop' into releases/Release_2_11_2_Branch
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2021-11-05
Jim Procter
JAL-3829 format and tidy up unused code
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2021-11-05
Jim Procter
JAL-3919 use model format field to ensure we get the...
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