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2017-11-16	Jim Procter	JAL-2822 stash start/end before setSequence (which...	commit \| commitdiff \| tree
2017-11-16	Jim Procter	JAL-2541 JAL-2822 verify limits for edited sequence...	commit \| commitdiff \| tree
2017-11-08	Jim Procter	Merge branch 'bug/JAL-2742' into develop	commit \| commitdiff \| tree
2017-11-08	Jim Procter	Revert "JAL-2742 release notes - pending confirmation...	commit \| commitdiff \| tree
2017-11-08	Jim Procter	JAL-2225 release note	commit \| commitdiff \| tree
2017-11-08	Jim Procter	Merge branch 'bug/JAL-2225mapMultipleChains' into develop	commit \| commitdiff \| tree
2017-11-08	Jim Procter	Merge branch 'develop' into bug/JAL-2225mapMultipleChains	commit \| commitdiff \| tree
2017-11-07	Jim Procter	JAL-2698 14 Nov 2017 release date for 2.10.3	commit \| commitdiff \| tree
2017-11-07	Jim Procter	JAL-2775 release notes	commit \| commitdiff \| tree
2017-11-07	Jim Procter	Merge branch 'imp/JAL-2775' into develop	commit \| commitdiff \| tree
2017-11-07	Jim Procter	JAL-2684 JAL-2822 avoid out of bounds exception if...	commit \| commitdiff \| tree
2017-11-07	Jim Procter	JAL-2822 JAL-2684 only create dataset seq for an edit...	commit \| commitdiff \| tree
2017-11-07	Jim Procter	JAL-2823 JAL-2822 JAL-2684 test sequence start and...	commit \| commitdiff \| tree
2017-11-07	Jim Procter	JAL-2822 JAL-2684 clarified javadoc	commit \| commitdiff \| tree
2017-11-07	Jim Procter	JAL-2684 failing test for trim-start -> incorrect pairwise...	commit \| commitdiff \| tree
2017-11-06	Jim Procter	JAL-2684 tidy unneeded code	commit \| commitdiff \| tree
2017-11-06	Jim Procter	Merge branch 'bug/JAL-2541cutRelocateFeatures' into...	commit \| commitdiff \| tree
2017-11-06	Jim Procter	JAL-2756 release notes	commit \| commitdiff \| tree
2017-11-06	Jim Procter	Merge branch 'bug/JAL-2756sequenceidmessage' into develop	commit \| commitdiff \| tree
2017-11-03	Jim Procter	Merge branch 'documentation/JAL-2698_release2103' into...	commit \| commitdiff \| tree
2017-11-03	Jim Procter	JAL-2818 modified README for launching jalview from...	commit \| commitdiff \| tree
2017-10-26	Jim Procter	JAL-2698 update version and cut release branch	commit \| commitdiff \| tree
2017-10-26	Jim Procter	JAL-2546 release notes	commit \| commitdiff \| tree
2017-10-26	Jim Procter	JAL-2488 patch causes of NPE during testStoreAndRecoverExpan...	commit \| commitdiff \| tree
2017-10-26	Jim Procter	Merge branch 'feature/JAL-2488finalize' into develop	commit \| commitdiff \| tree
2017-10-26	Jim Procter	JAL-2036 2.10.3 release notes	commit \| commitdiff \| tree
2017-10-26	Jim Procter	JAL-2793 cancelling font changed dialog didn't call...	commit \| commitdiff \| tree
2017-10-26	Jim Procter	JAL-2548 release notes	commit \| commitdiff \| tree
2017-10-26	Jim Procter	Merge branch 'bug/JAL-2776toggleGroupColour' into develop	commit \| commitdiff \| tree
2017-10-26	Jim Procter	JAL-2684 JAL-2685 release notes	commit \| commitdiff \| tree
2017-10-26	Jim Procter	JAL-2685 tidy up html doc	commit \| commitdiff \| tree
2017-10-26	Jim Procter	Merge branch 'features/JAL-2685pairwiseSeqLimits' into...	commit \| commitdiff \| tree
2017-10-26	Jim Procter	JAL-2392 test asserts for progressbar creation on the...	commit \| commitdiff \| tree
2017-10-25	Jim Procter	JAL-2617 release notes	commit \| commitdiff \| tree
2017-10-25	Jim Procter	Merge branch 'bug/JAL-2617mappedStopCodon' into develop	commit \| commitdiff \| tree
2017-10-25	Jim Procter	JAL-2636 release notes	commit \| commitdiff \| tree
2017-10-25	Jim Procter	JAL-2667 release notes	commit \| commitdiff \| tree
2017-10-25	Jim Procter	Merge branch 'bug/JAL-2667mouseWheelWrapped' into develop	commit \| commitdiff \| tree
2017-10-25	Jim Procter	JAL-2742 release notes - pending confirmation that...	commit \| commitdiff \| tree
2017-10-25	Jim Procter	JAL-2727 release notes	commit \| commitdiff \| tree
2017-10-25	Jim Procter	JAL-2727 add not to Test failed message recommending...	commit \| commitdiff \| tree
2017-10-25	Jim Procter	Merge branch 'bug/JAL-2727closeAllFreeMemory' into...	commit \| commitdiff \| tree
2017-10-25	Jim Procter	JAL-2732 JAL-1900 JAL-1625 release notes	commit \| commitdiff \| tree
2017-10-25	Jim Procter	Merge branch 'bugs/JAL-2779_osx_dialogsequencingbroke...	commit \| commitdiff \| tree
2017-10-25	Jim Procter	JAL-2779 remove empty block and if statement	commit \| commitdiff \| tree
2017-10-25	Jim Procter	JAL-2790 JAL-2392 release notes	commit \| commitdiff \| tree
2017-10-25	Jim Procter	Merge branch 'bug/JAL-2392_deadlockonpdbdisplay' into...	commit \| commitdiff \| tree
2017-10-25	Jim Procter	JAL-2790 provide a cancel button for JABAWS and AACon...	commit \| commitdiff \| tree
2017-10-25	Jim Procter	JAL-2392 auto boxing rather than explicit Long as key	commit \| commitdiff \| tree
2017-10-24	Jim Procter	JAL-2495 release notes	commit \| commitdiff \| tree
2017-10-24	Jim Procter	JAL-2643 JAL-2524 release notes	commit \| commitdiff \| tree
2017-10-24	Jim Procter	JAL-2524 release notes	commit \| commitdiff \| tree
2017-10-24	Jim Procter	JAL-2733 JAL-2658 release notes	commit \| commitdiff \| tree
2017-10-24	Jim Procter	JAL-1980 release notes (retrodoc for 2.10.0)	commit \| commitdiff \| tree
2017-10-24	Jim Procter	JAL-2687 JAL-2608 release notes	commit \| commitdiff \| tree
2017-10-24	Jim Procter	Merge branch 'features/JAL-2608closeOverview' into...	commit \| commitdiff \| tree
2017-10-24	Jim Procter	JAL-2542 release notes	commit \| commitdiff \| tree
2017-10-24	Jim Procter	JAL-2541 remove second unnecessary if	commit \| commitdiff \| tree
2017-10-24	Jim Procter	JAL-2541 only need to shift features for ‘internal...	commit \| commitdiff \| tree
2017-10-24	Jim Procter	JAL-2541 Cut ops always stash the old dataset sequence...	commit \| commitdiff \| tree
2017-10-24	Jim Procter	JAL-2541 don’t need to trash the sequence features...	commit \| commitdiff \| tree
2017-10-24	Jim Procter	JAL-2541 verify sequence features unaffected on dataset...	commit \| commitdiff \| tree
2017-10-24	Jim Procter	JAL-2541 assert that alignments sharing references...	commit \| commitdiff \| tree
2017-10-23	Jim Procter	Merge branch 'bug/JAL-2609attemptedmerge' into develop	commit \| commitdiff \| tree
2017-10-23	Jim Procter	JAL-2609 remove unused AlignPanel.fastPaint flag and...	commit \| commitdiff \| tree
2017-10-23	Jim Procter	Merge branch 'bug/JAL-2609attemptedmerge' into develop	commit \| commitdiff \| tree
2017-10-23	Jim Procter	JAL-2768 release notes	commit \| commitdiff \| tree
2017-10-23	Jim Procter	JAL-2739 release notes	commit \| commitdiff \| tree
2017-10-23	Jim Procter	Merge branch 'bug/JAL-2739' into develop	commit \| commitdiff \| tree
2017-10-23	Jim Procter	JAL-2682 release notes	commit \| commitdiff \| tree
2017-10-23	Jim Procter	Merge branch 'bug/JAL-2682parseId' into develop	commit \| commitdiff \| tree
2017-10-23	Jim Procter	JAL-2253 release notes	commit \| commitdiff \| tree
2017-10-23	Jim Procter	Merge branch 'bug/JAL-2253' into develop	commit \| commitdiff \| tree
2017-10-20	Jim Procter	JAL-2779 keep a reference to original Aqua manager...	commit \| commitdiff \| tree
2017-10-20	Jim Procter	JAL-2779 remove OSX platform specific import (not needed...	commit \| commitdiff \| tree
2017-10-20	Jim Procter	Merge branch 'patch/JAL-547_pid_groovyscript' into...	commit \| commitdiff \| tree
2017-10-20	Jim Procter	JAL-547 fix NPE when no selection available	commit \| commitdiff \| tree
2017-10-20	Jim Procter	JAL-547 only generate matrix for current selection...	commit \| commitdiff \| tree
2017-10-20	Jim Procter	JAL-547 PID script in release notes	commit \| commitdiff \| tree
2017-10-20	Jim Procter	Merge branch 'patch/JAL-547_pid_groovyscript' into...	commit \| commitdiff \| tree
2017-10-20	Jim Procter	JAL-547 updated the PID script for 2.10.x series score...	commit \| commitdiff \| tree
2017-10-18	Jim Procter	JAL-2779 switch order for updating the current alignment...	commit \| commitdiff \| tree
2017-10-18	Jim Procter	JAL-2779 remove dead code	commit \| commitdiff \| tree
2017-10-18	Jim Procter	JAL-2779 hook in our own AquaInternalFrameManager when...	commit \| commitdiff \| tree
2017-10-18	Jim Procter	JAL-2779 JAL-1551 source formatting	commit \| commitdiff \| tree
2017-10-18	Jim Procter	JAL-2779 patch so closing most recent frame doesn’t...	commit \| commitdiff \| tree
2017-10-18	Jim Procter	JAL-2779 original version of AquaInternalFrame Manager	commit \| commitdiff \| tree
2017-10-18	Jim Procter	JAL-2782 remark about possible exception due to unsafe...	commit \| commitdiff \| tree
2017-10-18	Jim Procter	JAL-2777 JAL-2773 release notes	commit \| commitdiff \| tree
2017-10-18	Jim Procter	Merge branch 'bugs/JAL-2777_whitespaceChain' into develop	commit \| commitdiff \| tree
2017-10-18	Jim Procter	JAL-2777 remove duplicate code outside conditional...	commit \| commitdiff \| tree
2017-10-17	Jim Procter	JAL-2777 release notes	commit \| commitdiff \| tree
2017-10-17	Jim Procter	Merge branch 'features/JAL-2773_dontalwaysrecolourstructureo...	commit \| commitdiff \| tree
2017-10-17	Jim Procter	JAL-2773 renamed flags for clarity	commit \| commitdiff \| tree
2017-10-17	Jim Procter	JAL-2777 patch for whitespace chain	commit \| commitdiff \| tree
2017-10-17	Jim Procter	JAL-2777 test for the whitespace chain	commit \| commitdiff \| tree
2017-10-17	Jim Procter	JAL-2481 patch to fix findFeatureColour for end-of...	commit \| commitdiff \| tree
2017-10-17	Jim Procter	JAL-2481 test correct behaviour of findFeatureColour...	commit \| commitdiff \| tree
2017-10-17	Jim Procter	JAL-2777 noticed exception raised on construction of...	commit \| commitdiff \| tree
2017-10-12	Jim Procter	JAL-2773 add new flag to paintAlignment(updateOverview...	commit \| commitdiff \| tree
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