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2011-01-12	jprocter	jalviewLite now needs plugin.jar from jre so it can...	commit \| commitdiff \| tree
2011-01-10	jprocter	patch for JAL-740	commit \| commitdiff \| tree
2011-01-07	jprocter	refactored dropFile allowing known information to be...	commit \| commitdiff \| tree
2011-01-07	jprocter	bulk associate pdb files dropped on to alignment :...	commit \| commitdiff \| tree
2011-01-07	jprocter	refactored guts of pdb file association code	commit \| commitdiff \| tree
2011-01-07	jprocter	check for all http protocols	commit \| commitdiff \| tree
2011-01-07	jprocter	refactored to use SequenceI	commit \| commitdiff \| tree
2011-01-06	jprocter	JAL-730	commit \| commitdiff \| tree
2011-01-05	jprocter	more robust calculation of partition from possibly...	commit \| commitdiff \| tree
2011-01-05	jprocter	inline submission of alignment with correct crlf	commit \| commitdiff \| tree
2011-01-05	jprocter	ensure group props are recalculated before alignment...	commit \| commitdiff \| tree
2011-01-05	jprocter	revised shmr service	commit \| commitdiff \| tree
2011-01-05	jprocter	todo and ensure old annotation/groups are removed before...	commit \| commitdiff \| tree
2011-01-05	jprocter	todo	commit \| commitdiff \| tree
2011-01-05	jprocter	exception reporting for bad URLs	commit \| commitdiff \| tree
2011-01-05	jprocter	JAL-727	commit \| commitdiff \| tree
2011-01-05	jprocter	JAL-727	commit \| commitdiff \| tree
2011-01-05	jprocter	propagated groups trimmed to correct region on viscontig	commit \| commitdiff \| tree
2011-01-05	jprocter	graphThreshold not being copied by constructor	commit \| commitdiff \| tree
2010-12-17	jprocter	first publicly accessible test of JAL-724	commit \| commitdiff \| tree
2010-12-17	jprocter	JAL-715 and JAL-724	commit \| commitdiff \| tree
2010-12-17	jprocter	JAL-715	commit \| commitdiff \| tree
2010-12-17	jprocter	refined modification test	commit \| commitdiff \| tree
2010-12-17	jprocter	refactored gap insert/visible view modification code...	commit \| commitdiff \| tree
2010-12-17	jprocter	adjust start and end of intersecting group relative...	commit \| commitdiff \| tree
2010-12-17	jprocter	1.1 compat	commit \| commitdiff \| tree
2010-12-17	jprocter	1.1 compat	commit \| commitdiff \| tree
2010-12-17	jprocter	refactored gap insert/visible view modification code...	commit \| commitdiff \| tree
2010-12-17	jprocter	javadoc	commit \| commitdiff \| tree
2010-12-15	jprocter	incremental refinement of results parsing	commit \| commitdiff \| tree
2010-12-15	jprocter	allow client to check if the original alignment data...	commit \| commitdiff \| tree
2010-12-15	jprocter	javadoc	commit \| commitdiff \| tree
2010-12-15	jprocter	update modification state flag according to parsing...	commit \| commitdiff \| tree
2010-12-15	jprocter	getters and modification state flag	commit \| commitdiff \| tree
2010-12-15	jprocter	more accurate determination of annotation modification	commit \| commitdiff \| tree
2010-12-15	jprocter	refactored key calc for hash to separate function	commit \| commitdiff \| tree
2010-12-14	jprocter	1.1 compat	commit \| commitdiff \| tree
2010-12-14	jprocter	1.1 compat	commit \| commitdiff \| tree
2010-12-14	jprocter	more fixes and extension to allow return data types...	commit \| commitdiff \| tree
2010-12-14	jprocter	render of html job logs and link opening JAL-720	commit \| commitdiff \| tree
2010-12-14	jprocter	more efficient set/append	commit \| commitdiff \| tree
2010-12-14	jprocter	method to recover sources from packed stream	commit \| commitdiff \| tree
2010-12-14	jprocter	always provide reference to hashtable so feature settings...	commit \| commitdiff \| tree
2010-12-14	jprocter	JAL-725 - show progress when opening URL in browser	commit \| commitdiff \| tree
2010-12-14	jprocter	JAL-724	commit \| commitdiff \| tree
2010-12-14	jprocter	refactored and patched for JAL-721	commit \| commitdiff \| tree
2010-12-14	jprocter	refactored and patched for JAL-721	commit \| commitdiff \| tree
2010-12-10	jprocter	mime types and handler	commit \| commitdiff \| tree
2010-12-10	jprocter	additional dependencies for httpcleint	commit \| commitdiff \| tree
2010-12-10	jprocter	javadoc	commit \| commitdiff \| tree
2010-12-10	jprocter	remove implicit non-1.1 compatible call	commit \| commitdiff \| tree
2010-12-09	jprocter	fix case when groups overlap - ensure groups are non...	commit \| commitdiff \| tree
2010-12-09	jprocter	java 1.1 patches	commit \| commitdiff \| tree
2010-12-09	jprocter	java 1.1 patches	commit \| commitdiff \| tree
2010-12-09	jprocter	dependency for Rest client framework (JAL-715)	commit \| commitdiff \| tree
2010-12-09	jprocter	initial implementation of Rest client framework (JAL...	commit \| commitdiff \| tree
2010-12-09	jprocter	dataIn.ready() is not a test of data source validity!	commit \| commitdiff \| tree
2010-12-09	jprocter	initial list of mime-type bindings to jalview data...	commit \| commitdiff \| tree
2010-12-09	jprocter	initial implementation for JAL-718	commit \| commitdiff \| tree
2010-12-09	jprocter	refactored and added methods for getting richer AlignmentVie...	commit \| commitdiff \| tree
2010-12-09	jprocter	new methods and test code for JAL-716	commit \| commitdiff \| tree
2010-12-09	jprocter	new constructor and refactored methods for intersecting...	commit \| commitdiff \| tree
2010-12-09	jprocter	new methods for testing for/storing selection/group...	commit \| commitdiff \| tree
2010-12-09	jprocter	javadoc and additional convenience method for JAL-716	commit \| commitdiff \| tree
2010-12-02	jprocter	refactored visible contig/gap map array intersection...	commit \| commitdiff \| tree
2010-11-15	jprocter	2.6.1 update	commit \| commitdiff \| tree
2010-11-14	jprocter	refactored to decouple dependencies due to FileParse...	commit \| commitdiff \| tree
2010-11-14	jprocter	refactored protocol check to jalview.io.FileParse	commit \| commitdiff \| tree
2010-11-14	jprocter	import annotation file from datasource	commit \| commitdiff \| tree
2010-11-14	jprocter	refactored protocol parser and allow human readable...	commit \| commitdiff \| tree
2010-11-14	jprocter	zero length operations are valid	commit \| commitdiff \| tree
2010-11-14	jprocter	flag indicating if results should be associated immediately	commit \| commitdiff \| tree
2010-11-14	jprocter	node rename for deuniquifying trees from web service...	commit \| commitdiff \| tree
2010-11-14	jprocter	2.6.1 release details	commit \| commitdiff \| tree
2010-11-14	jprocter	ignore	commit \| commitdiff \| tree
2010-11-12	jprocter	updated version to 2.6.1	commit \| commitdiff \| tree
2010-11-12	jprocter	patch for JAL-682 - copy over current display settings...	commit \| commitdiff \| tree
2010-11-12	jprocter	patch for JAL-699 so conservation/consensus threads...	commit \| commitdiff \| tree
2010-11-12	jprocter	patch for JAL-700	commit \| commitdiff \| tree
2010-11-12	jprocter	revised logic to avoid NPE	commit \| commitdiff \| tree
2010-11-11	jprocter	improved logic for distinguishing amino acids and nucleic...	commit \| commitdiff \| tree
2010-11-11	jprocter	potential non-threadsafe condition	commit \| commitdiff \| tree
2010-11-11	jprocter	patch for JAL-655	commit \| commitdiff \| tree
2010-11-04	jprocter	optional dialog to report any problematic web service...	commit \| commitdiff \| tree
2010-11-04	jprocter	prevented URLs appearing in both the 'bad ' and the...	commit \| commitdiff \| tree
2010-11-04	jprocter	made ws warning dialog optional, and fixed its wording...	commit \| commitdiff \| tree
2010-11-04	jprocter	report any problematic web service URLs ( JAL-343 )	commit \| commitdiff \| tree
2010-11-04	jprocter	remove name of progress bar when stopping ws refresh...	commit \| commitdiff \| tree
2010-10-29	jprocter	refactored so public interfaces take instances of WsParamSet...	commit \| commitdiff \| tree
2010-10-29	jprocter	parallelised service endpoint discovery and ensured...	commit \| commitdiff \| tree
2010-10-20	jprocter	more explicit menu entry text (JAL-675)	commit \| commitdiff \| tree
2010-10-20	jprocter	resolve some layout problems : JAL-685	commit \| commitdiff \| tree
2010-10-12	jprocter	patch primary issue causing JAL-664 re testing for...	commit \| commitdiff \| tree
2010-10-12	jprocter	patch for secondary issue in JAL-664 re parsing empty...	commit \| commitdiff \| tree
2010-09-26	jprocter	2.6 release date change	commit \| commitdiff \| tree
2010-09-23	jprocter	remove overrides	commit \| commitdiff \| tree
2010-09-23	jprocter	update release branch to 2.6	commit \| commitdiff \| tree
2010-09-23	jprocter	typos and indicate 'legacy' service documentation	commit \| commitdiff \| tree
2010-09-23	jprocter	NPE race condition alert - see JAL-661	commit \| commitdiff \| tree
2010-09-23	jprocter	revised author list	commit \| commitdiff \| tree
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