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JAL-2907 bug fix redone on HMMER branch
2018-03-29
gmungoc
JAL-2907 bug fix redone on HMMER branch
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2018-03-28
gmungoc
JAL-1265 output all dbrefs in Stockholm (+tests) (...
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2018-03-26
gmungoc
JAL-2939 pull up set/IsNormalise[HMM]SequenceLogo
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2018-03-26
gmungoc
JAL-2939 unused action handler methods removed
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2018-03-26
gmungoc
JAL-2939 no need to recalc HMM annotation for show...
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2018-03-26
gmungoc
JAL-2939 always store Information profile
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2018-03-23
gmungoc
JAL-2629 pad gaps when exporting alignment as 'database...
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2018-03-23
gmungoc
JAL-2937 unused field removed
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2018-03-23
gmungoc
JAL-2938 update colour schemes enum for class name...
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2018-03-23
gmungoc
JAL-2938 extracted base class for Hmmer colour schems
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2018-03-21
gmungoc
JAL-2629 tweaks to Information annotation updating
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2018-03-20
gmungoc
JAL-2629 InformationThread.findOrCreateAnnotation and...
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2018-03-20
gmungoc
Merge branch 'develop' into features/mchmmer
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2018-03-16
gmungoc
JAL-2679 getGeneId() now uses the same pattern as getGeneLoc...
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2018-03-16
gmungoc
Merge remote-tracking branch 'origin/releases/Release_2_10_4...
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2018-03-16
gmungoc
JAL-2922 update FeatureRenderer and repaint feature...
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2018-03-16
gmungoc
Merge branch 'develop' into features/mchmmer
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2018-03-16
gmungoc
Merge branch 'bug/JAL-2865removeGC' into develop
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2018-03-16
gmungoc
Merge branch 'develop' into trialMerge
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2018-03-15
gmungoc
JAL-2893 enabling Get Crossreferences to ENSEMBLGENOMES
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2018-03-14
gmungoc
JAL-2893 include ENSEMBLGENOMES as a 'roundtrip db...
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2018-03-14
gmungoc
JAL-2679 reinstating changes lost in VCF merge
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2018-03-14
gmungoc
JAL-2679 reinstating changes lost in VCF merge
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2018-03-13
gmungoc
JAL-2913 use FIGURE_FIXEDIDWIDTH (not FIGURE_USERIDWIDTH)
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2018-03-08
gmungoc
Merge remote-tracking branch 'origin/releases/Release_2_10_4...
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2018-03-08
gmungoc
JAL-2885 tests updated for code changes
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2018-03-08
gmungoc
JAL-2930 use MouseWheelEvent.getPreciseWheelRotation...
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2018-03-07
gmungoc
Merge branch 'bugs/JAL-2922' into releases/Release_2_10_4_Branch
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2018-03-07
gmungoc
JAL-2922 [2] not [1] for Boolean column of table
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2018-03-07
gmungoc
Merge branch 'bugs/JAL-2922' into releases/Release_2_10_4_Branch
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2018-03-07
gmungoc
JAL-2922 i18n and bespoke handler for Invert Selection
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2018-03-07
gmungoc
Merge branch 'bug/JAL-2924nullTooltip' into releases...
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2018-03-07
gmungoc
JAL-2926 fix copy group consensus (and paste sequence...
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2018-03-07
gmungoc
JAL-2925 handle empty annotation when copying group...
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2018-03-07
gmungoc
JAL-2913 use FIGURE_USERIDWIDTH for fixed id width...
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2018-03-07
gmungoc
JAL-2629 storage and lifecycle of alignment/group HMM...
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2018-03-02
gmungoc
JAL-2729 draft help pages for HMMER menu
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2018-03-01
gmungoc
JAL-2629 revising hmmer annotation updating (wip)
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2018-02-28
gmungoc
JAL-2924 no tooltip over null annotation positions
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2018-02-28
gmungoc
JAL-2629 some tidying of Hmmer commands (wip)
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2018-02-27
gmungoc
JAL-2668 method name change for clarity
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2018-02-27
gmungoc
JAL-2668 fix broken factory method for colour scheme
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2018-02-27
gmungoc
JAL-2717 JAL-2668 fixes to HMMER colour scheme display...
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2018-02-26
gmungoc
JAL-2599 test coverage and bug fixes for 'minimal file...
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2018-02-23
gmungoc
JAL-2599 corrected case-insensitive symbol indexing
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2018-02-23
gmungoc
JAL-2599 parser and datamodel use primitive double...
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2018-02-22
gmungoc
JAL-2629 tidy tests, refactor hmmer node mapping slightly
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2018-02-22
gmungoc
JAL-2629 tidy unit tests, constants etc
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2018-02-21
gmungoc
JAL-2629 simplifying method signatures in Hmmer command...
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2018-02-20
gmungoc
JAL-2629 removed SequenceI.get/setLastPosition and...
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2018-02-20
gmungoc
Merge branch 'develop' into features/mchmmer
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2018-02-20
gmungoc
JAL-2897 updated unit test for code change
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2018-02-20
gmungoc
Merge branch 'develop' into features/JAL-1793VCF
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2018-02-19
gmungoc
JAL-2629 refactoring of Hmmer preferences
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2018-02-19
gmungoc
JAL-2629 partial refactoring of Hmmer command classes
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2018-02-19
gmungoc
JAL-2629 formatting only
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2018-02-09
gmungoc
JAL-2789 avoid using transcript (with no UTR) as CDS...
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2018-02-09
gmungoc
JAL-2789 code format changes only (before functional...
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2018-02-09
gmungoc
JAL-2666 fix failure to scroll split alignment of height 1
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2018-02-08
gmungoc
JAL-2666 basic initial fix for split screen scroll bug
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2018-02-07
gmungoc
JAL-2808 ensure pattern field re-enabled when needed...
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2018-02-05
gmungoc
JAL-2897 more informative description on synonymous...
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2018-02-05
gmungoc
JAL-2897 more informative description on synonymous...
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2018-02-05
gmungoc
Merge branch 'spikes/mungo' into trialMerge
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2018-02-05
gmungoc
JAL-2897 more informative description on synonymous...
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2018-02-02
gmungoc
JAL-984 merged to spikes-mungo
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2018-02-02
gmungoc
Merge branch 'feature/JAL-984splitAdjuster' into features...
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2018-02-02
gmungoc
JAL-984 use cursor for drag regions to adjust annotation...
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2018-02-02
gmungoc
JAL-984 better behaved panel height adjuster
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2018-01-31
gmungoc
JAL-2792 added tooltip to menu items in case of truncation
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2018-01-30
gmungoc
JAL-2069 menu item now "Variable colour..." to hint...
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2018-01-30
gmungoc
JAL-1793 update spike build to latest incl stop and...
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2018-01-30
gmungoc
JAL-2898 show 'stop_gained' variants on peptide sequences
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2018-01-30
gmungoc
JAL-2897 generate peptide variants for synonymous codon...
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2018-01-30
gmungoc
JAL-2897 formatting change only prior to functional...
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2018-01-29
gmungoc
Merge branch 'feature/JAL-2759' of https://source.jalview...
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2018-01-29
gmungoc
JAL-1270 testPadGaps() added
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2018-01-29
gmungoc
JAL-2743 recoded EnsemblLookup without lambda expressions...
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2018-01-26
gmungoc
Merge branch 'develop' into features/JAL-1793VCF
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2018-01-18
gmungoc
JAL-2810 JAL-2886 i18n
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2018-01-18
gmungoc
JAL-2679 update query id to actual case of retrieved...
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2018-01-17
gmungoc
JAL-2679 case-insensitive comparison of query and retrieved...
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2018-01-16
gmungoc
JAL-2679 use object_type=Transcript for lookup of Parent...
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2018-01-16
gmungoc
JAL-2885 uniprot now https, uniprot/ensembl/pfam/xfam...
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2018-01-16
gmungoc
JAL-1270 JAL-2885 clear properties before load
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2018-01-10
gmungoc
JAL-2865 unhelpful System.gc() calls removed
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2018-01-10
gmungoc
JAL-1793 update spike branch to latest
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2018-01-10
gmungoc
JAL-2791 ignore feature type visibility in getColor()
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2018-01-09
gmungoc
JAL-2843 test roundtrip of feature colours and filters...
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2018-01-09
gmungoc
JAL-2843 unit tests for writing filters to Jalview...
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2018-01-09
gmungoc
JAL-2843 unit tests for Save/Load colours and filters...
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2018-01-09
gmungoc
JAL-2808 small tweaks to api / Javadoc
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2018-01-08
gmungoc
JAL-2069 fix setting initial value of slider from threshold
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2017-12-14
gmungoc
JAL-2843 missed Castor class
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2017-12-14
gmungoc
JAL-2843 save/restore colour feature by attribute,...
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2017-12-14
gmungoc
JAL-2879 save/restore feature sub-attributes in Jalview...
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2017-12-14
gmungoc
JAL-2843 missed Castor class
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2017-12-14
gmungoc
JAL-2843 and Castor metadata file for latest changes
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2017-12-14
gmungoc
JAL-2843 schema and code changes to save colour by...
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2017-12-13
gmungoc
JAL-2843 add isByAttribute to interface for convenience
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