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jalview.git
2014-10-21 Jim ProcterJAL-674 check for null vector before ... commit | commitdiff | tree | snapshot
2014-10-21 Jim ProcterJAL-1551 reinstate missing import commit | commitdiff | tree | snapshot
2014-10-21 Jim ProcterJAL-674 initial implementation - only need to extract... commit | commitdiff | tree | snapshot
2014-10-21 Jim ProcterJAL-1551 crlf commit | commitdiff | tree | snapshot
2014-10-21 Jim ProcterJAL-674 JAL-1551 imports dropped during merge commit | commitdiff | tree | snapshot
2014-10-21 Jim ProcterJAL-1216 update to VARNA 3.91 commit | commitdiff | tree | snapshot
2014-10-21 Jim ProcterJAL-674 remove any spurious PDBEntrys generated by... commit | commitdiff | tree | snapshot
2014-10-21 Jim ProcterJAL-674 methods and test for PDB derived annotation... commit | commitdiff | tree | snapshot
2014-10-21 Jim ProcterJAL-674 store ID in MCview.PDBfile calcId string, not... commit | commitdiff | tree | snapshot
2014-10-21 Jim ProcterJAL-674 don't create multiple secondary structure lines... commit | commitdiff | tree | snapshot
2014-10-21 Jim ProcterJAL-674 test for the test for presence of annotation... commit | commitdiff | tree | snapshot
2014-10-21 Jim ProcterJAL-674 test for presence of annotation derived from... commit | commitdiff | tree | snapshot
2014-10-21 Jim ProcterJAL-1551 formatting commit | commitdiff | tree | snapshot
2014-10-21 Jim ProcterJAL-1551 formatting commit | commitdiff | tree | snapshot
2014-10-21 Jim ProcterJAL-674 patch for duplicate row bug commit | commitdiff | tree | snapshot
2014-10-21 Jim ProcterJAL-674 test for duplicate alignment annotation rows... commit | commitdiff | tree | snapshot
2014-10-21 Jim ProcterJAL-1551 formatting commit | commitdiff | tree | snapshot
2014-10-21 Jim ProcterJAL-674 patch to ensure existing annotation is properly... commit | commitdiff | tree | snapshot
2014-10-21 Jim ProcterJAL-674 test to ensure sequence and annotation on seque... commit | commitdiff | tree | snapshot
2014-10-21 Jim ProcterJAL-1551 source formatting commit | commitdiff | tree | snapshot
2014-10-21 Jim ProcterJAL-674 JAL-207 getTers for aligned sequences in datase... commit | commitdiff | tree | snapshot
2014-10-21 Jim ProcterJAL-674 refactor method to match and transfer annotatio... commit | commitdiff | tree | snapshot
2014-10-21 Jim ProcterJAL-1551 formatting commit | commitdiff | tree | snapshot
2014-10-21 Jim ProcterMerge branch 'features/JAL-1264_showHideAnnotations... commit | commitdiff | tree | snapshot
2014-10-21 Jim ProcterJAL-1551 crlf changes commit | commitdiff | tree | snapshot
2014-10-16 Jim ProcterMerge branch 'feature/JAL-674_dssp' into features/JAL... features/JAL-1264_showHideAnnotations commit | commitdiff | tree | snapshot
2014-10-15 Jim ProcterMerge branch 'jims_crlf_hell_JAL-1551' of https://sourc... commit | commitdiff | tree | snapshot
2014-10-15 Jim ProcterJAL-1551 crlf changes due to checkout with text=auto commit | commitdiff | tree | snapshot
2014-10-15 Jim ProcterJAL-1551 crlf changes due to checkout with text=auto commit | commitdiff | tree | snapshot
2014-10-15 Jim ProcterJAL-674 always try to extract secondary structure when... commit | commitdiff | tree | snapshot
2014-10-15 Jim ProcterJAL-674 support preservation of any annotation created... commit | commitdiff | tree | snapshot
2014-10-15 Jim ProcterJAL-674 make transferAnnotation method static commit | commitdiff | tree | snapshot
2014-10-15 Jim ProcterJAL-348 JAL-674 JAL-1564 TODO and implementation error... commit | commitdiff | tree | snapshot
2014-10-15 Jim ProcterJAL-674 patch logic to test whether old and new sequenc... commit | commitdiff | tree | snapshot
2014-10-15 Jim ProcterJAL-674 JAL-1305 JAL-348 new liftOver method and test... commit | commitdiff | tree | snapshot
2014-10-14 gmungocJAL-1551 CRLF handling commit | commitdiff | tree | snapshot
2014-10-13 gmungocJAL-1264 unneeded setup removed commit | commitdiff | tree | snapshot
2014-10-13 gmungocJAL-1264 unit test corrected commit | commitdiff | tree | snapshot
2014-10-12 gmungocJAL-1544 SEQENCE -> SEQUENCE commit | commitdiff | tree | snapshot
2014-10-12 gmungocJAL-1264 help updates for show/hide annotations on commit | commitdiff | tree | snapshot
2014-10-10 Jim ProcterJAL-674 employ new signature in Annotate3D service... commit | commitdiff | tree | snapshot
2014-10-10 Jim ProcterJAL-674 disable secondary structure annotation when... commit | commitdiff | tree | snapshot
2014-10-10 Jim ProcterJAL-674 typo commit | commitdiff | tree | snapshot
2014-10-10 Jim ProcterJAL-674 new constructors to pass flags about annotating... commit | commitdiff | tree | snapshot
2014-10-10 Jim ProcterJAL-674 parser flag to control secondary structure... commit | commitdiff | tree | snapshot
2014-10-10 Jim ProcterJAL-674 change jalview.io.AlignFile to allow parsing... commit | commitdiff | tree | snapshot
2014-10-10 gmungocJAL-1551 project-specific settings commit | commitdiff | tree | snapshot
2014-10-10 gmungocJAL-1551 proposed project settings for code cleanup... commit | commitdiff | tree | snapshot
2014-10-10 gmungocJAL-1264 unit tests commit | commitdiff | tree | snapshot
2014-10-10 gmungocSuppressed test that needs user interaction to allow... commit | commitdiff | tree | snapshot
2014-10-10 gmungocJAL-1551 CRLF handling commit | commitdiff | tree | snapshot
2014-10-10 gmungocJAL-1264 show/hide annotations, plus merged changes commit | commitdiff | tree | snapshot
2014-10-10 gmungocJAL-1481 wrap tooltip in html commit | commitdiff | tree | snapshot
2014-10-10 gmungocJAL-1264 added getAlignmentAnnotations(calcId, label) commit | commitdiff | tree | snapshot
2014-10-10 gmungocJAL-1264 reverted (removed added method) commit | commitdiff | tree | snapshot
2014-10-09 Jim ProcterMerge branch 'bug/JAL-1558' into Release_2_8_2_Branch commit | commitdiff | tree | snapshot
2014-10-09 Jim Procterpatch fixes JAL-1558 commit | commitdiff | tree | snapshot
2014-10-08 gmungocMerge branch 'Release_2_8_2_Branch' into commit | commitdiff | tree | snapshot
2014-10-07 Jim ProcterMerge branch 'bugs/JAL-1151' into Release_2_8_2_Branch commit | commitdiff | tree | snapshot
2014-10-07 Jim ProcterJAL-1557 partial implementation - need to think about... commit | commitdiff | tree | snapshot
2014-10-07 Jim Procterpatch for JAL-1151 - select whole sequence when double... commit | commitdiff | tree | snapshot
2014-10-07 Jim ProcterJAL-1421 remove Vector and pass a list commit | commitdiff | tree | snapshot
2014-10-07 Jim ProcterJAL-1151 source tidy commit | commitdiff | tree | snapshot
2014-10-07 gmungocJAL-1264 wip commit | commitdiff | tree | snapshot
2014-10-07 gmungocJAL-1554 handle left-then-right click on sequence id commit | commitdiff | tree | snapshot
2014-10-06 Jim ProcterMerge branch 'JAL-429_phylip-file-support' into Release... commit | commitdiff | tree | snapshot
2014-10-06 Jim ProcterMerge branch 'patch/JAL-848' into JAL-429_phylip-file... commit | commitdiff | tree | snapshot
2014-10-06 Jim ProcterMerge branch 'patch/JAL-848' into Release_2_8_2_Branch commit | commitdiff | tree | snapshot
2014-10-06 Jim ProcterJAL-848 reinstate netbeans files from Phylip patch... commit | commitdiff | tree | snapshot
2014-10-06 Jim ProcterMerge branch 'JAL-429_phylip-file-support' into Release... commit | commitdiff | tree | snapshot
2014-10-06 Jim ProcterMerge branch 'Release_2_8_2_Branch' into JAL-429_phylip... commit | commitdiff | tree | snapshot
2014-10-06 Jim ProcterMerge branch 'patch/JAL-1286_JAL-1265' into Release_2_8... commit | commitdiff | tree | snapshot
2014-10-06 Jim ProcterJAL-1286 missing file for testcase where file ends... commit | commitdiff | tree | snapshot
2014-10-06 Jim ProcterJAL-1500 JAL-1265 patch to parse PDB database refs... commit | commitdiff | tree | snapshot
2014-10-06 Jim ProcterMerge branch 'feature/JAL-654_dssp' into Release_2_8_2_... commit | commitdiff | tree | snapshot
2014-10-06 Jim ProcterJAL-654 remove any annotation rows for chain specific... commit | commitdiff | tree | snapshot
2014-10-06 Jim ProcterJAL-654 updated pdb db fetcher test to verify the numbe... commit | commitdiff | tree | snapshot
2014-10-06 Jim ProcterJAL-654 JAL-1264 sequence associated annotation is... commit | commitdiff | tree | snapshot
2014-10-06 Jim ProcterJAL-654 format and refactor test demonstrating PDB... commit | commitdiff | tree | snapshot
2014-10-06 Jim ProcterJAL-1115 TODO remove use of java.util.Vector commit | commitdiff | tree | snapshot
2014-10-06 Jim ProcterJAL-654 javadoc createDatasetSequence and transferAnnot... commit | commitdiff | tree | snapshot
2014-10-06 Jim ProcterJAL-654_dssp formatting and javadoc commit | commitdiff | tree | snapshot
2014-10-03 Charles OfoegbuIntegration of David Corsars Phylip File support commit | commitdiff | tree | snapshot
2014-10-03 Jim ProcterMerge branch 'Release_2_8_2_Branch_i18n' into Release_2... commit | commitdiff | tree | snapshot
2014-10-03 Jim ProcterJAL-1355 removed all top level html tags from message... commit | commitdiff | tree | snapshot
2014-10-03 gmungocJAL-1264 javadoc update commit | commitdiff | tree | snapshot
2014-10-03 gmungocJAL-1264 show/hide annotations; JAL-1481 Find tooltip commit | commitdiff | tree | snapshot
2014-10-03 gmungocJAL-1506 delete all warning; JAL-1264 show/hide annotations commit | commitdiff | tree | snapshot
2014-10-03 gmungocJAL-1264 refactored show/hide annotation types includin... commit | commitdiff | tree | snapshot
2014-10-03 gmungocJAL-1481 search expression validation commit | commitdiff | tree | snapshot
2014-10-03 gmungocJAL-1506 correct exit on close align frame commit | commitdiff | tree | snapshot
2014-10-03 gmungocJAL-914 don't open help window twice commit | commitdiff | tree | snapshot
2014-10-03 gmungocJAL-1264 show/hide annotations, JAL-1481 search validat... commit | commitdiff | tree | snapshot
2014-10-03 Charles Ofoegburemoved local test data commit | commitdiff | tree | snapshot
2014-10-03 Charles OfoegbuLocal branch test commit | commitdiff | tree | snapshot
2014-10-03 Jim ProcterMerge branch 'Release_2_8_2_Branch' into Release_2_8_2_... commit | commitdiff | tree | snapshot
2014-10-03 Jim ProcterMerge branch 'bugs/JAL-1138_osgi' into Release_2_8_2_Branch commit | commitdiff | tree | snapshot
2014-10-03 Jim ProcterJAL-1338 note added #fridaycommits not actually connect... commit | commitdiff | tree | snapshot
2014-10-03 Jim ProcterMerge branch 'bugs/JAL-1138_osgi' into Release_2_8_2_Branch commit | commitdiff | tree | snapshot
2014-10-03 Jim ProcterJAL-1499 simple test to check JABA client can commit | commitdiff | tree | snapshot
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