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jalview.git
2024-04-18
Ben Soares
JAL-4397 fixed testresetIdWidth() test on macos
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2024-01-23
James Procter
JAL-4356 release notes
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2024-01-23
James Procter
JAL-4356 update release notes for 2.11.3.3
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2024-01-23
James Procter
Merge branch 'bug/JAL-4290_headless_alignment_export_wi...
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2024-01-23
James Procter
Merge branch 'develop' into bug/JAL-4290_headless_align...
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2024-01-23
Ben Soares
JAL-4367 Limit right and top adjustments
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2024-01-23
Ben Soares
JAL-4290 Fix image comparison between gui and headless...
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2024-01-23
Ben Soares
JAL-4290 fixed tests
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2024-01-23
Ben Soares
Merge branch 'bug/JAL-4353_cannot_output_multiple_diffe...
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2024-01-23
Ben Soares
Merge branch 'develop' into bug/JAL-4353_cannot_output_...
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2024-01-23
James Procter
Merge branch 'bug/JAL-4353_cannot_output_multiple_diffe...
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2024-01-23
James Procter
JAL-4353 wait for files to be written fully before...
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2024-01-23
James Procter
JAL-4353 singleThread all tests
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2024-01-23
James Procter
JAL-4369 invokeAndWait to avoid hang whilst calling...
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2024-01-23
James Procter
JAL-4369 uniprotkb - try to avoid another redirect...
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2024-01-23
James Procter
JAL-4369 use rest.uniprot.org as fetch domain
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2024-01-23
James Procter
Merge branch 'bug/JAL-4373_jvmmemmax_and_jvmmempc_ignor...
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2024-01-23
James Procter
Merge branch 'bug/JAL-4368_default_colourscheme_applied...
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2024-01-19
Ben Soares
JAL-4373 Setting the jvmmempc and jvmmemmax strings...
bug/JAL-4373_jvmmemmax_and_jvmmempc_ignored_on_command_line_for_executable_jar_launch
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2024-01-19
Ben Soares
JAL-4373 Fix Main-Class and other attribute settings...
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2024-01-05
Ben Soares
JAL-4368 Only set a colour scheme if --colour is given...
bug/JAL-4368_default_colourscheme_applied_to_JVP_inappropriately
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2023-12-19
Ben Soares
JAL-4290 Fixed one test
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2023-12-18
Ben Soares
JAL-4290 not quite working tests
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2023-12-18
Ben Soares
JAL-4290 incorrect usage of main()
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2023-12-15
Ben Soares
Merge branch 'bug/JAL-4290_headless_alignment_export_wi...
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2023-12-15
Ben Soares
JAL-4290 Add method to allow for specific settings...
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2023-12-15
Ben Soares
JAL-4290 Set structureSelectionManager settings more...
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2023-12-15
James Procter
Merge branch 'bug/JAL-4290_headless_alignment_figure_wi...
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2023-12-15
James Procter
JAL-4290 new CommandsTest.headlessOrGuiImageOutputTest...
bug/JAL-4290_headless_alignment_figure_with_sse
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2023-12-15
Ben Soares
JAL-4290 Move some annotation visibility settings to...
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2023-12-14
James Procter
JAL-4356 update release notes
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2023-12-14
James Procter
Merge branch 'bug/JAL-4353_cannot_output_multiple_diffe...
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2023-12-14
James Procter
Merge branch 'bug/JAL-4353_cannot_output_multiple_diffe...
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2023-12-14
James Procter
JAL-4353 wait for files to be written fully before...
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2023-12-14
James Procter
JAL-4217 singleThread all tests
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2023-12-14
James Procter
Merge branch 'bug/JAL-2934proportionalScrolling' into...
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2023-12-14
James Procter
Merge branch 'develop' into bug/JAL-2934proportionalScr...
bug/JAL-2934proportionalScrolling
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2023-12-12
Ben Soares
JAL-4353 bigger tighter test
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2023-12-12
James Procter
JAL-4217 don’t try and export an image when Jmol is...
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2023-12-12
Ben Soares
Merge branch 'bug/JAL-4353_cannot_output_multiple_diffe...
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2023-12-12
James Procter
Merge branch 'develop' into bug/JAL-4353_cannot_output_...
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2023-12-12
James Procter
JAL-4217 close internal frame on the swing thread to...
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2023-12-12
Ben Soares
JAL-4353 helper method and test for primary/secondary...
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2023-12-12
James Procter
Merge branch 'bug/JAL-4353_cannot_output_multiple_diffe...
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2023-12-12
James Procter
JAL-4353 failing test
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2023-12-12
James Procter
JAL-4353 fix assert that successive test output files...
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2023-12-11
James Procter
JAL-4192 more specific info about versions needed
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2023-12-06
Ben Soares
JAL-4353 re-used random color code
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2023-12-06
Ben Soares
JAL-4353 Preserve the user given 'linkedId' with ArgVal...
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2023-12-06
James Procter
JAL-4356 bump RELEASE
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2023-12-06
James Procter
JAL-4356 new release notes and whats new for 2.11.3...
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2023-12-06
James Procter
Merge branch 'patch/JAL-840_clustalx_docs_fix' into...
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2023-12-06
James Procter
Merge branch 'bug/JAL-2934proportionalScrolling' into...
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2023-12-06
Ben Soares
JAL-4353 Add a 'random' colour to produce a random...
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2023-12-05
Ben Soares
JAL-4353 Add secondary Types for Args, for STRUCTUREIMA...
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2023-12-01
Ben Soares
JAL-4243 Updated bio.tools record and JSON (version...
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2023-11-30
James Procter
JAL-4351 update release notes for JAL-4342
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2023-11-30
James Procter
Merge branch 'patch/JAL-4342_emptyannotationsexport...
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2023-11-30
James Procter
JAL-4342 test and patch checking annotation csv export...
patch/JAL-4342_emptyannotationsexport
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2023-11-30
James Procter
Patch fixes JAL-4165 - added to release notes JAL-4351
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2023-11-30
James Procter
JAL-4351 2.11.3.2 scheduled for 1st December release
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2023-11-30
James Procter
Merge branch 'bug/JAL-4344_structureimage_cl_arg_only_c...
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2023-11-30
Ben Soares
JAL-4344 careful application of -Djava.awt.headless...
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2023-11-22
James Procter
JAL-4343 fix insufficient-caffeine error - add whats...
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2023-11-22
James Procter
JAL-4343 release today, update notes for JAL-4348 and...
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2023-11-22
James Procter
Merge branch 'patch/JAL-4345_pae_epas1_doubleclick...
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2023-11-21
James Procter
JAL-4345 patch and release notes
patch/JAL-4345_pae_epas1_doubleclick
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2023-11-20
Ben Soares
JAL-4348 Add newer versions of Chimera and ChimeraX...
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2023-11-20
James Procter
JAL-4343 patch for JAL-4347 uniprot non-pos feature...
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2023-11-17
James Procter
JAL-4343 release notes for JAL-4340 and JAL-4243
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2023-11-17
James Procter
JAL-4343 bump version
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2023-11-16
Ben Soares
JAL-4243 Updated bio.tools record for 2.11.3.0
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2023-11-16
Ben Soares
JAL-4340 Change launch scripts to be xresources to...
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2023-11-15
James Procter
JAL-4090 JAL-4334 patch in release notes
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2023-11-15
James Procter
Merge branch 'bug/JAL-4334_unknownstartenduniprotfeatur...
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2023-11-15
James Procter
Merge branch 'patch/JAL-4222_100s_timeout_on_imagexport...
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2023-11-15
James Procter
JAL-4273 actually pass startSeq etc on to rendering...
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2023-11-15
James Procter
JAL-4090 fix up release notes new known issues
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2023-11-15
James Procter
JAL-4222 bail if we wait too long for Jmol to save...
patch/JAL-4222_100s_timeout_on_imagexport
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2023-11-15
James Procter
JAL-4090 blocker patch JAL-3772 tidy up groovy console...
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2023-11-15
James Procter
JAL-4090 JAL-4334 position status when start, end or...
bug/JAL-4334_unknownstartenduniprotfeatures
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2023-11-15
James Procter
JAL-4090 JAL-4338 known defect
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2023-11-15
James Procter
JAL-4090 release 15th November 2023
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2023-11-15
James Procter
JAL-4090 JAL-3858 fix up PAE docs - drop the EBI image...
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2023-11-13
James Procter
JAL-4090 JAL-1551 source license
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2023-11-13
James Procter
JAL-4090 relese date 14th Nov 2023
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2023-11-13
James Procter
JAL-4236 don’t look for headers in JalviewJS
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2023-11-13
James Procter
JAL-4336 set preferred dimensions for JTextBox workarou...
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2023-11-13
James Procter
JAL-4090 fix JAL-4236 - just put the name of the class...
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2023-11-13
James Procter
JAL-4331 construct and pass on overview title before...
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2023-11-13
James Procter
JAL-4334 failing test using whole of Q29079 accession...
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2023-11-09
Ben Soares
JAL-4090 minor missing word correction to whatsnew
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2023-11-03
James Procter
JAL-4090 JAL-1551 spotlessApply
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2023-11-03
James Procter
JAL-4090 tweak what’s new
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2023-11-02
James Procter
JAL-4090 reported new known issue JAL-4328
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2023-11-02
James Procter
JAL-4192 minimal specification of gradle version in...
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2023-11-02
James Procter
JAL-4090 fix up release notes - add notes or JAL-4216...
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2023-11-02
James Procter
JAL-4169 fix up urls to faq and documentation
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2023-11-02
James Procter
JAL-4090 known issue report for JAL-4517
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2023-11-02
James Procter
JAL-4090 release notes for JAL-1713 JAL-2528 and known...
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