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jalview.git
2008-06-30 jprocterincluded includeGaps flag in clustalW colour calculatio... commit | commitdiff | tree | snapshot
2008-06-26 jprocteradded URLEncoder.encode to properly escape CGI encoded... commit | commitdiff | tree | snapshot
2008-06-23 jprocterlocal sequence properties are preserved in SeqCigar... commit | commitdiff | tree | snapshot
2008-05-26 jprocterUniprot is not actually a multi-acc capable source... commit | commitdiff | tree | snapshot
2008-05-26 jprocterbugfix so MULTI_ACC capable sources value property... commit | commitdiff | tree | snapshot
2008-05-26 jprocterminor bugfix for case when PDB sequence strings are... commit | commitdiff | tree | snapshot
2008-05-12 jprocterfixed Jalview project archive bug where alignment view... commit | commitdiff | tree | snapshot
2008-05-02 jprocterbugfix to avoid null pointer exceptions being raised... commit | commitdiff | tree | snapshot
2008-05-01 jprocterfix for unicode char labels causing arrayOutOfBoundsExc... commit | commitdiff | tree | snapshot
2008-04-29 jproctercomments and version wget ping timeout fix for when... commit | commitdiff | tree | snapshot
2008-04-29 jprocteradded SeqSearch service interface. Documented and refac... commit | commitdiff | tree | snapshot
2008-04-29 jproctertrial fix for parsing NHX style trees to extract the... commit | commitdiff | tree | snapshot
2008-04-25 jprocterpotential fix for hang on opening of application window... commit | commitdiff | tree | snapshot
2008-04-22 jproctertypo on Jalview help url commit | commitdiff | tree | snapshot
2008-04-21 jprocterdocumented and refactored to facilitate headless featur... commit | commitdiff | tree | snapshot
2008-04-21 jprocteradded centre column labels menu entry to format menu commit | commitdiff | tree | snapshot
2008-04-21 jprocteradded centre annotation labels menu entry (and commente... commit | commitdiff | tree | snapshot
2008-04-21 jproctercentrecolumnlabels format menu item and parameter added... commit | commitdiff | tree | snapshot
2008-04-21 jproctercastor debug option cleared commit | commitdiff | tree | snapshot
2008-04-17 jprocterbugfix for refactoring (webservice windows wouldn't... commit | commitdiff | tree | snapshot
2008-04-17 jprocterjavadoc and refactor of setWebService method to allow... commit | commitdiff | tree | snapshot
2008-04-17 jproctertodo for refactoring webservice GUI creation mechanism commit | commitdiff | tree | snapshot
2008-04-17 jprocterjavadoc for webservice client tutorial commit | commitdiff | tree | snapshot
2008-04-17 jproctertodos commit | commitdiff | tree | snapshot
2008-04-17 jprocterjavadoc and quiet flag commit | commitdiff | tree | snapshot
2008-04-11 jprocterfix JPred thread so job aborts if submission fails. commit | commitdiff | tree | snapshot
2008-04-10 jprocterquick fix for conservation calculation when residue... commit | commitdiff | tree | snapshot
2008-04-10 jprocterbug fix for Features/Annotations file parameter parsing... commit | commitdiff | tree | snapshot
2008-03-08 jprocterfirst hack to get true DNA and Sequence highlighting... commit | commitdiff | tree | snapshot
2008-03-08 jproctercorrection to Jnet service documentation commit | commitdiff | tree | snapshot
2008-02-24 jproctersequenceId is a string, not an integer - allows generat... commit | commitdiff | tree | snapshot
2008-02-24 jproctersequenceId is a string, not an integer - allows generat... commit | commitdiff | tree | snapshot
2008-02-22 jproctersequenceId is a string, not an integer - allows generat... commit | commitdiff | tree | snapshot
2008-02-22 jproctervalid format for writing test commit | commitdiff | tree | snapshot
2008-02-22 jprocterprobably unnecessary optimisation (SequenceGroup.addSeq... commit | commitdiff | tree | snapshot
2008-02-22 jprocterOn 'save' menu entry check to see if fileformat is... commit | commitdiff | tree | snapshot
2008-02-22 jprocterCDS segment index commit | commitdiff | tree | snapshot
2008-02-22 jprocterpossible fix for stockhom ss-annotation re-creation... commit | commitdiff | tree | snapshot
2008-02-22 jprocterindex number for contiguous part of mapped sequence... commit | commitdiff | tree | snapshot
2008-02-22 jprocterjavadoc commit | commitdiff | tree | snapshot
2008-02-22 jproctertypo for AXISLOGLEVEL constant commit | commitdiff | tree | snapshot
2008-02-22 jprocterexplicit quote of chaincode in errror message commit | commitdiff | tree | snapshot
2008-01-29 jprocterminor change to output of main method for testing file IO commit | commitdiff | tree | snapshot
2008-01-29 jproctergroovy from stdin commit | commitdiff | tree | snapshot
2008-01-29 jproctermemory usage information and flag to indicate if warnin... commit | commitdiff | tree | snapshot
2008-01-29 jprocteradd methods to read from current position of existing... commit | commitdiff | tree | snapshot
2008-01-29 jprocterensure mark is set before identification is started. commit | commitdiff | tree | snapshot
2008-01-29 jprocterFileParse object can be re-used to read different files... commit | commitdiff | tree | snapshot
2008-01-29 jprocterflag to indicate if errors are raised as warning dialog... commit | commitdiff | tree | snapshot
2008-01-29 jprocterexplicitly allow access to showMemoryUsage flag in... commit | commitdiff | tree | snapshot
2008-01-29 jprocterjavadoc commit | commitdiff | tree | snapshot
2008-01-29 jproctergroovy scripts can be read from stdin commit | commitdiff | tree | snapshot
2008-01-29 jprocterreinstated proper case insensitive searching for both... commit | commitdiff | tree | snapshot
2008-01-22 jproctertimings and memory usage for reading in a file commit | commitdiff | tree | snapshot
2008-01-22 jproctermore efficient parsing of large files, do not create... commit | commitdiff | tree | snapshot
2008-01-22 jprocterensured that seqeunce feature shift takes into account... commit | commitdiff | tree | snapshot
2008-01-22 jprocternew method to get map of sequence positions correspondi... commit | commitdiff | tree | snapshot
2008-01-21 jprocterfix regex for annotation subtype to use non-whitespace... commit | commitdiff | tree | snapshot
2008-01-21 jprocterjavadoc and main method for testing file input routines commit | commitdiff | tree | snapshot
2008-01-21 jprocterjavadoc commit | commitdiff | tree | snapshot
2008-01-15 jprocterdraft of 2.4 features in feature list commit | commitdiff | tree | snapshot
2008-01-11 jprocteradded groovy documentation to contents commit | commitdiff | tree | snapshot
2008-01-11 jprocterjalview memory monitor instructions added commit | commitdiff | tree | snapshot
2008-01-11 jprocterdesktop tools menu updated commit | commitdiff | tree | snapshot
2008-01-11 jproctergroovy and das fetching stuff in command line argument... commit | commitdiff | tree | snapshot
2008-01-11 jprocterdocumentation for groovy console and basic groovy... commit | commitdiff | tree | snapshot
2008-01-11 jprocteradded groovy argument for launching a groovy script... commit | commitdiff | tree | snapshot
2008-01-11 jproctermemory monitor, garbage collection and changed menu... commit | commitdiff | tree | snapshot
2007-12-21 jprocteruniprotxml format comment (ebi changed service parameter) commit | commitdiff | tree | snapshot
2007-12-21 jproctersource directory tree documentation commit | commitdiff | tree | snapshot
2007-12-21 jprocterautomatic dbref fetching and sequence validation for... commit | commitdiff | tree | snapshot
2007-12-21 jprocterfurther bugfix and annotation transfer for dna/protein... commit | commitdiff | tree | snapshot
2007-12-21 jprocterjavadoc and bugfix commit | commitdiff | tree | snapshot
2007-12-21 jproctersequence db fetcher and db reference validation/annotat... commit | commitdiff | tree | snapshot
2007-12-21 jproctersequence db fetcher metadata for multiple sequence... commit | commitdiff | tree | snapshot
2007-12-21 jproctertemporary bugfix ? commit | commitdiff | tree | snapshot
2007-12-21 jprocterbugfix commit | commitdiff | tree | snapshot
2007-12-21 jprocterequivalence for transferring/updating references commit | commitdiff | tree | snapshot
2007-12-21 jprocterbugfixes commit | commitdiff | tree | snapshot
2007-12-18 jprocterincorrect colour-by-sequence when gaps are present... commit | commitdiff | tree | snapshot
2007-12-13 jprocterjava 1.1 compatibility (again) commit | commitdiff | tree | snapshot
2007-12-13 jprocterjava 1.1 compatibility (again) commit | commitdiff | tree | snapshot
2007-11-30 jprocternull pointer bugfix commit | commitdiff | tree | snapshot
2007-11-30 jprocterbugfixed MapList (must be propagated to vamsas version... commit | commitdiff | tree | snapshot
2007-11-30 jprocterjavadoc and transferAnnotation method commit | commitdiff | tree | snapshot
2007-11-30 jproctercase insensitive matching of database ids commit | commitdiff | tree | snapshot
2007-11-30 jproctercase invariant matching of seqeunce feature to sequence... commit | commitdiff | tree | snapshot
2007-11-28 jprocterbugfix commit | commitdiff | tree | snapshot
2007-11-24 jprocteronly show bootstrap values if they are valid! commit | commitdiff | tree | snapshot
2007-11-16 jproctertypo commit | commitdiff | tree | snapshot
2007-11-16 jprocterjavadoc commit | commitdiff | tree | snapshot
2007-11-16 jprocteradded generic method for adding new database proxies... commit | commitdiff | tree | snapshot
2007-11-16 jprocterrefactored ebi soap client and AbstractSequenceFetcher... commit | commitdiff | tree | snapshot
2007-11-16 jproctertodo for sortbyPID operating on current selection rathe... commit | commitdiff | tree | snapshot
2007-11-16 jprocterjavadoc commit | commitdiff | tree | snapshot
2007-11-16 jprocterrefactor abstract sequence fetching and DBSource machin... commit | commitdiff | tree | snapshot
2007-11-12 jproctercrossrefs have properly updated pdbId lists commit | commitdiff | tree | snapshot
2007-11-12 jprocterjavadoc and introduction of dasserver and fetchdas... commit | commitdiff | tree | snapshot
2007-11-12 jprocteradded mechanism to initiate DAS feature fetching progra... commit | commitdiff | tree | snapshot
2007-11-12 jprocterpublic access to static getAlignFrames method. commit | commitdiff | tree | snapshot
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