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jalview.git
2019-07-15 Jim ProcterMerge branch 'merge/JAL-3285_mchmmer_with_211_develop... commit | commitdiff | tree | snapshot
2019-07-12 ThomasJAL-2629 can now choose number of jackhmmer iterations merge/JAL-3285_mchmmer_with_211_develop commit | commitdiff | tree | snapshot
2019-07-12 ThomasJAL-2629 fix faulty label in a MessageManager.getString... commit | commitdiff | tree | snapshot
2019-07-12 ThomasJAL-2629 add sort by evalue and bit score commit | commitdiff | tree | snapshot
2019-07-12 ThomasJAL-2629 hmmer searches now read domain rather than... commit | commitdiff | tree | snapshot
2019-07-11 Jim ProcterMerge branch 'merge/JAL-3285_mchmmer_with_211_develop... commit | commitdiff | tree | snapshot
2019-07-11 ThomasJAL-2629 hmmer searches include seqs past inclusion... commit | commitdiff | tree | snapshot
2019-07-11 ThomasJAL-2629 hmm search UI and structural improvements... commit | commitdiff | tree | snapshot
2019-07-10 Jim ProcterJAL-3070 standard way of storing/recovering documentati... commit | commitdiff | tree | snapshot
2019-07-10 Jim ProcterJAL-3070 remove final reference to Jws2Instance commit | commitdiff | tree | snapshot
2019-07-10 tvaJAL-2629 fix hmmsearch/jackhmmer assigning incorrect... commit | commitdiff | tree | snapshot
2019-07-10 Jim ProcterMerge branch 'tasks/JAL-3070_wsinterfaces' into alpha... commit | commitdiff | tree | snapshot
2019-07-10 tvaJAL-2629 fix hmsearch and jackhmmer not being able... commit | commitdiff | tree | snapshot
2019-07-10 tvaJAL-2629 hmmsearch # of new sequences now only displaye... commit | commitdiff | tree | snapshot
2019-07-10 tvaJAL-2629 fix incorrect hmmbuild on groups behaviour commit | commitdiff | tree | snapshot
2019-07-10 Jim ProcterJAL-3289 bamboo properties for ‘BUILD’ getdown channel... commit | commitdiff | tree | snapshot
2019-07-10 Jim ProcterJAL-3289 bamboo properties for ‘BUILD’ getdown channel commit | commitdiff | tree | snapshot
2019-07-10 Jim ProcterMerge branch 'merge/JAL-3285_mchmmer_with_211_develop... commit | commitdiff | tree | snapshot
2019-07-10 tvaJAL-2629 fix hmmsearch/jackhmmer being unable to search... commit | commitdiff | tree | snapshot
2019-07-05 tvaJAL-2629 uniquify all hmmer command sequence outputs commit | commitdiff | tree | snapshot
2019-07-05 tvaJAL-2629 fix file format issues preventing hmmsearch... commit | commitdiff | tree | snapshot
2019-07-05 Ben SoaresJAL-1544 fixed a html encoding of '<' (%lt; -> &lt... commit | commitdiff | tree | snapshot
2019-07-04 Jim ProcterJAL-3111 correct JVL appbase for 2.10.5 via getdown commit | commitdiff | tree | snapshot
2019-07-04 Jim ProcterMerge branch 'task/JAL-3337-rm-lib-update-sourceDist... commit | commitdiff | tree | snapshot
2019-07-04 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie... commit | commitdiff | tree | snapshot
2019-07-04 Jim ProcterJAL-3337 round-and-round the process source files again commit | commitdiff | tree | snapshot
2019-07-04 Jim ProcterJAL-3337 more includes and excludes commit | commitdiff | tree | snapshot
2019-07-04 Jim ProcterJAL-3337 remove the old lib directory ! task/JAL-3337-rm-lib-update-sourceDist commit | commitdiff | tree | snapshot
2019-07-04 Jim ProcterJAL-3337 rejig the source distribution generation to... commit | commitdiff | tree | snapshot
2019-07-04 Jim ProcterJAL-3111 replace year in header for help pages and... commit | commitdiff | tree | snapshot
2019-07-04 Ben SoaresJAL-3225 try/catch for non-deprecated/deprecated proper... commit | commitdiff | tree | snapshot
2019-07-04 Ben SoaresJAL-3353 Change to build.gradle to use the file://... commit | commitdiff | tree | snapshot
2019-07-04 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2019-07-04 gmungocJAL-3111 help pages minor corrections commit | commitdiff | tree | snapshot
2019-07-04 Ben SoaresJAL-3348 fixed an internal href in help to allow building commit | commitdiff | tree | snapshot
2019-07-04 Ben SoaresJAL-3337 adjusted building doc as sourceDist uses gradl... commit | commitdiff | tree | snapshot
2019-07-04 Jim ProcterMerge branch 'task/JAL-3348_document_cli_memory_setting... commit | commitdiff | tree | snapshot
2019-07-04 Jim ProcterJAL-3111 JAL-3348 JVL file documentation commit | commitdiff | tree | snapshot
2019-07-04 Jim ProcterJAL-3348 revised bsoares memory settings documentation... commit | commitdiff | tree | snapshot
2019-07-04 Ben SoaresMerge branch 'develop' into task/JAL-3348_document_cli_... commit | commitdiff | tree | snapshot
2019-07-03 Ben SoaresJAL-3348 memory.html documentation finished for 2.11.0 commit | commitdiff | tree | snapshot
2019-07-03 Ben SoaresJAL-3348 jvmmempc in jvl file now works in linux commit | commitdiff | tree | snapshot
2019-07-03 Ben SoaresJAL-3348 jvmmempc multiple values shouldn't be merged commit | commitdiff | tree | snapshot
2019-07-03 Jim ProcterJAL-3111 tidy up lists/indentation for release notes commit | commitdiff | tree | snapshot
2019-07-03 Jim ProcterJAL-3111 Java 11 only and 'onwards' commit | commitdiff | tree | snapshot
2019-07-03 Jim ProcterJAL-3111 more whatsNew tweaks commit | commitdiff | tree | snapshot
2019-07-03 Jim ProcterMerge branch 'task/JAL-3337_gradle_tasks_sourceDist_and... commit | commitdiff | tree | snapshot
2019-07-03 Jim ProcterJAL-3111 more whats new commit | commitdiff | tree | snapshot
2019-07-03 Ben SoaresJAL-3348 start of new memory setting text commit | commitdiff | tree | snapshot
2019-07-03 Ben SoaresJAL-3348 jvmmempc allowed in jvl file commit | commitdiff | tree | snapshot
2019-07-03 Ben SoaresMerge branch 'develop' into task/JAL-3348_document_cli_... commit | commitdiff | tree | snapshot
2019-07-03 Jim ProcterMerge branch 'documentation/JAL-2843_featureFiltersForm... commit | commitdiff | tree | snapshot
2019-07-03 tvaJAL-2629 fix search scores being read in incorrectly commit | commitdiff | tree | snapshot
2019-07-03 tvaJAL-2629 fix hmm on alignment being deleted upon runnin... commit | commitdiff | tree | snapshot
2019-07-03 tvaJAL-2629 evalues and bit scores now conserved after... commit | commitdiff | tree | snapshot
2019-07-03 tvaJAL-2629 removed empty line produced under sequence... commit | commitdiff | tree | snapshot
2019-07-03 tvaJAL-2629 can now filter by sequence e-value or bit... commit | commitdiff | tree | snapshot
2019-07-03 Ben SoaresJAL-3348 prepping getdown to pass JVM command line... commit | commitdiff | tree | snapshot
2019-07-02 Jim ProcterJAL-3111 updated what’s new… still more to come ! commit | commitdiff | tree | snapshot
2019-07-02 Jim ProcterJAL-3111 updated privacy statement to remove mention... commit | commitdiff | tree | snapshot
2019-07-02 Jim ProcterJAL-3111 JAL-3150 revised Jalview archive documentation... commit | commitdiff | tree | snapshot
2019-07-02 Jim ProcterJAL-3111 JAL-3348 removed pre 2.11 instructions on... commit | commitdiff | tree | snapshot
2019-07-02 Jim ProcterJAL-3111 JAL-3280 hide the version check preference... commit | commitdiff | tree | snapshot
2019-07-02 Jim ProcterJAL-3111 tidied up preferences dialog documentation commit | commitdiff | tree | snapshot
2019-07-02 Jim ProcterJAL-3111 fix broken helpTOC link commit | commitdiff | tree | snapshot
2019-07-02 Jim ProcterMerge branch 'tasks/JAL-3311_removeVamsasMenu' into... commit | commitdiff | tree | snapshot
2019-07-02 Jim ProcterMerge branch 'develop' into tasks/JAL-3311_removeVamsasMenu commit | commitdiff | tree | snapshot
2019-07-02 Ben SoaresMerge branch 'develop' into task/JAL-3337_gradle_tasks_... commit | commitdiff | tree | snapshot
2019-07-02 Ben SoaresJAL-3337 Tidied up j8libs in THIRDPARTYLIBS. Replaced... commit | commitdiff | tree | snapshot
2019-07-02 Jim ProcterJAL-3111 release date now 4th July 2019 - codename... commit | commitdiff | tree | snapshot
2019-07-02 Jim ProcterMerge branch 'documentation/JAL-3111_release_211' into... commit | commitdiff | tree | snapshot
2019-07-02 Jim ProcterJAL-3111 formatting commit | commitdiff | tree | snapshot
2019-07-02 Jim ProcterJAL-3111 new known defect from JAL-797 commit | commitdiff | tree | snapshot
2019-07-02 Jim ProcterJAL-3111 release notes for JAL-2789 JAL-2744 JAL-1889... commit | commitdiff | tree | snapshot
2019-07-02 Jim ProcterJAL-3111 whats new and JAL-2738 JAL-2743 expanded help... commit | commitdiff | tree | snapshot
2019-07-02 Ben SoaresMerge branch 'develop' into task/JAL-3337_gradle_tasks_... commit | commitdiff | tree | snapshot
2019-07-02 Ben SoaresJAL-3337 Excluding j11modDir from source distribution... commit | commitdiff | tree | snapshot
2019-07-02 Ben SoaresJAL-3337 Updated the j11lib jars (don't need to be... commit | commitdiff | tree | snapshot
2019-07-02 Jim ProcterJAL-3337 gradle.properties for publish help as html... commit | commitdiff | tree | snapshot
2019-07-02 Jim ProcterJAL-3337 publish help as html pages with GA tracker... commit | commitdiff | tree | snapshot
2019-07-02 tvaJAL-2629 hmm match score colour scheme now colours... commit | commitdiff | tree | snapshot
2019-07-02 tvaJAL-2629 add simple jackhmmer functionality commit | commitdiff | tree | snapshot
2019-07-02 Ben SoaresJAL-3337 starting to add to THIRDPARTYLIBS commit | commitdiff | tree | snapshot
2019-07-01 Ben SoaresJAL-3322 increase concurrent downloads in getdown commit | commitdiff | tree | snapshot
2019-07-01 Ben SoaresJAL-3333 removed unused variable commit | commitdiff | tree | snapshot
2019-07-01 Ben SoaresJAL-3337 Added some more files to source tar.gz file commit | commitdiff | tree | snapshot
2019-07-01 Ben SoaresJAL-3337 added gzip compression. Archive filename now... commit | commitdiff | tree | snapshot
2019-07-01 Ben SoaresJAL-3322 getdown jars with network timeouts applied commit | commitdiff | tree | snapshot
2019-07-01 Ben SoaresJAL-3332 Sensible default timeout values for network... commit | commitdiff | tree | snapshot
2019-07-01 Ben SoaresJAL-3333 using floats for smoother weighting commit | commitdiff | tree | snapshot
2019-07-01 Ben SoaresJAL-3337 added sourceDist task to gradle. Creates... commit | commitdiff | tree | snapshot
2019-07-01 Ben SoaresJAL-3337 update to JAVA-11-README to state current... commit | commitdiff | tree | snapshot
2019-07-01 Ben SoaresMerge branch 'develop' into task/JAL-3337_gradle_tasks_... commit | commitdiff | tree | snapshot
2019-06-29 Ben SoaresJAL-3333 Sorry couldn't resist adding a bit of weightin... commit | commitdiff | tree | snapshot
2019-06-29 Ben SoaresJAL-3333 Title text now appears instantly. Altering... commit | commitdiff | tree | snapshot
2019-06-28 Ben SoaresMerge branch 'bug/JAL-3333_Blurry_fonts_in_WebServiceIn... commit | commitdiff | tree | snapshot
2019-06-28 Ben SoaresJAL-3333 changed RGB model. Tested in mojave and Windo... commit | commitdiff | tree | snapshot
2019-06-28 Jim ProcterJAL-3111 release notes for JAL-3330 JAL-3021 (tweak... commit | commitdiff | tree | snapshot
2019-06-28 tvaJAL-2629 add ability to add background frequencies... commit | commitdiff | tree | snapshot
2019-06-28 Ben SoaresJAL-3337 start of a Tar task commit | commitdiff | tree | snapshot
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