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2020-02-14 Jim ProcterJAL-3531 failing test commit | commitdiff | tree | snapshot
2020-02-14 Jim ProcterJAL-3529 more detailed asserts to detect whitespace... commit | commitdiff | tree | snapshot
2020-02-14 Jim ProcterJAL-3529 preferentially output source dbrefs or princip... commit | commitdiff | tree | snapshot
2020-02-14 Jim ProcterJAL-3529 failing test for bug commit | commitdiff | tree | snapshot
2020-02-12 Ben SoaresJAL-3289 Updated doc/building.md to explain possible... commit | commitdiff | tree | snapshot
2020-02-11 Jim ProcterJAL-3407 release notes for JAL-3375 commit | commitdiff | tree | snapshot
2020-02-11 Jim ProcterJAL-3376 highlighted in what’s new commit | commitdiff | tree | snapshot
2020-02-11 Jim ProcterJAL-3407 - JAL-3376 JAL-3377 release notes commit | commitdiff | tree | snapshot
2020-02-11 Jim ProcterJAL-3407 start of whats new for 2.11.1.0 commit | commitdiff | tree | snapshot
2020-02-11 Jim ProcterJAL-3376 documentation for standard attributes for... commit | commitdiff | tree | snapshot
2020-02-11 Jim ProcterJAL-3407 release notes (JAL-3386 signoff, new-knowns... commit | commitdiff | tree | snapshot
2020-02-11 Jim ProcterJAL-3407 JAL-3508 move to 2.11.1.0 point release versio... commit | commitdiff | tree | snapshot
2020-02-03 Jim ProcterMerge branch 'task/JAL-3510-update-clover-to-4.4.1... commit | commitdiff | tree | snapshot
2020-02-03 Jim ProcterJAL-3510 JAL-3153 clover instrumentation for tests task/JAL-3510-update-clover-to-4.4.1 commit | commitdiff | tree | snapshot
2020-01-30 Jim ProcterJAL-3510 bump clover version in gradle build dependencies commit | commitdiff | tree | snapshot
2020-01-29 Ben SoaresJAL-3341 Increase number of lines looked at by test... commit | commitdiff | tree | snapshot
2020-01-28 gmungocJAL-3341 debug for failing unit test bug/JAL-3341unitTestFails commit | commitdiff | tree | snapshot
2020-01-28 gmungocMerge branch 'feature/JAL-3121gffAttributeMap' into... commit | commitdiff | tree | snapshot
2020-01-28 gmungocJAL-3187 one more obsolete method removed commit | commitdiff | tree | snapshot
2020-01-24 gmungocJAL=3121 more data format validation/tests, help text... feature/JAL-3121gffAttributeMap commit | commitdiff | tree | snapshot
2020-01-23 gmungocJAL-3121 update help page for GFF column 9 nested attri... commit | commitdiff | tree | snapshot
2020-01-23 gmungocJAL-3121 'attributes map' in GFF3 without special ... commit | commitdiff | tree | snapshot
2020-01-16 Jim ProcterJAL-3474 release notes commit | commitdiff | tree | snapshot
2020-01-16 Jim ProcterMerge branch 'improvement/JAL-3474_lots_of_.cvsignore_f... commit | commitdiff | tree | snapshot
2019-12-20 Ben SoaresJAL-3473 Checked value of def and min. Set def to min... commit | commitdiff | tree | snapshot
2019-12-12 Jim ProcterJAL-2305 moved failing CrossRef tests to Functional_Fai... commit | commitdiff | tree | snapshot
2019-12-12 Jim ProcterJAL-3407 update release date for Jalview 2.11.1 commit | commitdiff | tree | snapshot
2019-11-01 Ben SoaresJAL-3474 removed all .cvsignore files stored in the... improvement/JAL-3474_lots_of_.cvsignore_files commit | commitdiff | tree | snapshot
2019-10-15 Jim ProcterJAL-3407 update release date for Jalview 2.11.1 commit | commitdiff | tree | snapshot
2019-10-11 Jim ProcterMerge branch 'develop' into documentation/JAL-3407_2... commit | commitdiff | tree | snapshot
2019-09-26 gmungocJAL-2481 remove code duplication left by merge commit | commitdiff | tree | snapshot
2019-09-26 gmungocJAL-3441 action double-click in Feature Type column... commit | commitdiff | tree | snapshot
2019-08-23 gmungocJAL-3141 correct cast of spinner value commit | commitdiff | tree | snapshot
2019-08-22 gmungocJAL-3121 slightly cleaner parsing of, and unit test... commit | commitdiff | tree | snapshot
2019-08-22 gmungocMerge branch 'develop' into feature/JAL-3121gffAttributeMap commit | commitdiff | tree | snapshot
2019-08-22 gmungocJAL-3187 case-insensitive codon variant calculation commit | commitdiff | tree | snapshot
2019-08-22 gmungocJAL-3121 round trip GFF attributes including map-valued... commit | commitdiff | tree | snapshot
2019-08-22 gmungocJAL-3187 one more obsolete method removed commit | commitdiff | tree | snapshot
2019-08-21 gmungocJAL-3187 minor code tidying, todo removal commit | commitdiff | tree | snapshot
2019-08-12 Jim ProcterJAL-2987 release notes commit | commitdiff | tree | snapshot
2019-08-12 Jim ProcterJAL-3407 update RELEASE and cut new release notes in... commit | commitdiff | tree | snapshot
2019-08-12 Jim ProcterJAL-3407 JAL-3406 update credits in Jalview 2.11.1 commit | commitdiff | tree | snapshot
2019-08-09 gmungocJAL-3187 removal of variant feature (non-virtual) trans... commit | commitdiff | tree | snapshot
2019-08-07 gmungocJAL-3187 (fudge) look in both alignments for stored... feature/JAL-3187linkedFeatures commit | commitdiff | tree | snapshot
2019-08-07 gmungocMerge branch 'develop' into feature/JAL-3187linkedFeatures commit | commitdiff | tree | snapshot
2019-07-31 gmungocJAL-3389 add .py to restored Chimera session filename... commit | commitdiff | tree | snapshot
2019-07-31 gmungocMerge branch 'bug/JAL-3388structureChooserSorting'... commit | commitdiff | tree | snapshot
2019-07-30 gmungocJAL-3198 more efficient Sequence.getDisplayId() commit | commitdiff | tree | snapshot
2019-07-30 gmungocJAL-3388 correct class for column 0 Ref Sequence bug/JAL-3388structureChooserSorting commit | commitdiff | tree | snapshot
2019-07-29 gmungocJAL-3386 correct wrapped width calculation for headless... commit | commitdiff | tree | snapshot
2019-07-29 gmungocJAL-3377 more reused of SeqCanvas.computeWrappedGeometry commit | commitdiff | tree | snapshot
2019-07-29 gmungocJAL-3377 add seq-annotations gap to cheight not to... commit | commitdiff | tree | snapshot
2019-07-29 gmungocJAL-3377 Javadoc added for getWrappedHeight() commit | commitdiff | tree | snapshot
2019-07-29 gmungocJAL-3377 corrected wrapped widths height for IdCanvas commit | commitdiff | tree | snapshot
2019-07-29 gmungocJAL-3377 include seq-annotation spacing in getWrappedHe... commit | commitdiff | tree | snapshot
2019-07-26 gmungocMerge branch 'features/JAL-3375vcfValidation' into commit | commitdiff | tree | snapshot
2019-07-26 gmungocJAL-1793 only decode specific special characters in... commit | commitdiff | tree | snapshot
2019-07-26 gmungocJAL-3376 capture VCF POS, ID, QUAL, FILTER as feature... features/JAL-3375vcfValidation commit | commitdiff | tree | snapshot
2019-07-26 gmungocJAL-3375 format validate VCF Integer and Float fields commit | commitdiff | tree | snapshot
2019-07-25 gmungocJAL-3375 ignore '.' values for VCF data commit | commitdiff | tree | snapshot
2019-07-16 gmungocMerge branch 'develop' into feature/JAL-3187linkedFeatures commit | commitdiff | tree | snapshot
2019-07-16 gmungocJAL-2987 tolerate null double values when formatting... commit | commitdiff | tree | snapshot
2019-07-10 gmungocMerge branch 'develop' into feature/JAL-3187linkedFeatures commit | commitdiff | tree | snapshot
2019-07-10 Jim ProcterJAL-3289 bamboo properties for ‘BUILD’ getdown channel... commit | commitdiff | tree | snapshot
2019-07-10 Jim ProcterJAL-3289 bamboo properties for ‘BUILD’ getdown channel commit | commitdiff | tree | snapshot
2019-07-08 gmungocJAL-3187 derived peptide variants tweaks and tests commit | commitdiff | tree | snapshot
2019-07-05 gmungocJAL-3187 initial refactoring towards peptide variant... commit | commitdiff | tree | snapshot
2019-07-05 Ben SoaresJAL-1544 fixed a html encoding of '<' (%lt; -> &lt... commit | commitdiff | tree | snapshot
2019-07-05 gmungocJAL-1793 apply URL decoding when saving VCF attribute... commit | commitdiff | tree | snapshot
2019-07-04 Jim ProcterJAL-3111 correct JVL appbase for 2.10.5 via getdown commit | commitdiff | tree | snapshot
2019-07-04 Jim ProcterMerge branch 'task/JAL-3337-rm-lib-update-sourceDist... commit | commitdiff | tree | snapshot
2019-07-04 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie... commit | commitdiff | tree | snapshot
2019-07-04 Jim ProcterJAL-3337 round-and-round the process source files again commit | commitdiff | tree | snapshot
2019-07-04 Jim ProcterJAL-3337 more includes and excludes commit | commitdiff | tree | snapshot
2019-07-04 Jim ProcterJAL-3337 remove the old lib directory ! task/JAL-3337-rm-lib-update-sourceDist commit | commitdiff | tree | snapshot
2019-07-04 Jim ProcterJAL-3337 rejig the source distribution generation to... commit | commitdiff | tree | snapshot
2019-07-04 Jim ProcterJAL-3111 replace year in header for help pages and... commit | commitdiff | tree | snapshot
2019-07-04 Ben SoaresJAL-3225 try/catch for non-deprecated/deprecated proper... commit | commitdiff | tree | snapshot
2019-07-04 Ben SoaresJAL-3353 Change to build.gradle to use the file://... commit | commitdiff | tree | snapshot
2019-07-04 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2019-07-04 gmungocJAL-3111 help pages minor corrections commit | commitdiff | tree | snapshot
2019-07-04 Ben SoaresJAL-3348 fixed an internal href in help to allow building commit | commitdiff | tree | snapshot
2019-07-04 Ben SoaresJAL-3337 adjusted building doc as sourceDist uses gradl... commit | commitdiff | tree | snapshot
2019-07-04 Jim ProcterMerge branch 'task/JAL-3348_document_cli_memory_setting... commit | commitdiff | tree | snapshot
2019-07-04 Jim ProcterJAL-3111 JAL-3348 JVL file documentation commit | commitdiff | tree | snapshot
2019-07-04 Jim ProcterJAL-3348 revised bsoares memory settings documentation... commit | commitdiff | tree | snapshot
2019-07-04 Ben SoaresMerge branch 'develop' into task/JAL-3348_document_cli_... commit | commitdiff | tree | snapshot
2019-07-03 Ben SoaresJAL-3348 memory.html documentation finished for 2.11.0 commit | commitdiff | tree | snapshot
2019-07-03 Ben SoaresJAL-3348 jvmmempc in jvl file now works in linux commit | commitdiff | tree | snapshot
2019-07-03 Ben SoaresJAL-3348 jvmmempc multiple values shouldn't be merged commit | commitdiff | tree | snapshot
2019-07-03 Jim ProcterJAL-3111 tidy up lists/indentation for release notes commit | commitdiff | tree | snapshot
2019-07-03 Jim ProcterJAL-3111 Java 11 only and 'onwards' commit | commitdiff | tree | snapshot
2019-07-03 Jim ProcterJAL-3111 more whatsNew tweaks commit | commitdiff | tree | snapshot
2019-07-03 Jim ProcterMerge branch 'task/JAL-3337_gradle_tasks_sourceDist_and... commit | commitdiff | tree | snapshot
2019-07-03 Jim ProcterJAL-3111 more whats new commit | commitdiff | tree | snapshot
2019-07-03 Ben SoaresJAL-3348 start of new memory setting text commit | commitdiff | tree | snapshot
2019-07-03 Ben SoaresJAL-3348 jvmmempc allowed in jvl file commit | commitdiff | tree | snapshot
2019-07-03 Ben SoaresMerge branch 'develop' into task/JAL-3348_document_cli_... commit | commitdiff | tree | snapshot
2019-07-03 Jim ProcterMerge branch 'documentation/JAL-2843_featureFiltersForm... commit | commitdiff | tree | snapshot
2019-07-03 Ben SoaresJAL-3348 prepping getdown to pass JVM command line... commit | commitdiff | tree | snapshot
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