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jalview.git
2023-01-23 Ben SoaresJAL-629 Attempts to add PAE to structure. --headless... commit | commitdiff | tree | snapshot
2023-01-18 Ben SoaresJAL-629 make sequence id key 'seqid' commit | commitdiff | tree | snapshot
2023-01-11 Ben SoaresJAL-629 added Alphafold cif, pdb and PAE json files... commit | commitdiff | tree | snapshot
2023-01-11 Ben SoaresJAL-629 refactoring TFType. Remove i18n identification... commit | commitdiff | tree | snapshot
2022-12-19 Ben SoaresJAL-629 Add image output and quit commit | commitdiff | tree | snapshot
2022-12-15 Ben SoaresJAL-629 move SubId to more logical place. Attempt remov... commit | commitdiff | tree | snapshot
2022-12-14 Ben SoaresJAL-629 Open Structure Viewer from cmdline commit | commitdiff | tree | snapshot
2022-12-09 Ben SoaresJAL-629 null check, fixed tests! commit | commitdiff | tree | snapshot
2022-12-08 Ben SoaresJAL-629 fix opening files commit | commitdiff | tree | snapshot
2022-12-08 Ben SoaresJAL-629 stray code deleted commit | commitdiff | tree | snapshot
2022-12-08 Ben SoaresJAL-629 Allow attachment of pAE file to a particular... commit | commitdiff | tree | snapshot
2022-12-05 Ben SoaresJAL-629 implementation of --tempfac options commit | commitdiff | tree | snapshot
2022-11-23 Ben SoaresJAL-629 Doing things with the command line arguments commit | commitdiff | tree | snapshot
2022-11-03 Jim ProcterJAL-3855 JAL-4095 simple picking of ranges adjacent... commit | commitdiff | tree | snapshot
2022-10-30 Jim ProcterJAL-2349 JAL-3855 bizarre resizing exception when resiz... commit | commitdiff | tree | snapshot
2022-10-30 Jim ProcterJAL-4091 lines to associate rows sharing same sequence... commit | commitdiff | tree | snapshot
2022-10-30 Jim ProcterJAL-2353 patch for Ensembl refs from uniprot - needs... commit | commitdiff | tree | snapshot
2022-10-29 Jim ProcterJAL-4094 shift+click drag up/down to resize all annotat... commit | commitdiff | tree | snapshot
2022-10-29 Jim ProcterJAL-4091 - noodling about including the names for seque... commit | commitdiff | tree | snapshot
2022-10-29 Jim ProcterJAL-4090 bump version and set up release notes for... commit | commitdiff | tree | snapshot
2022-10-29 Jim ProcterMerge branch 'features/JAL-4061_and_JAL-4062_findselect... commit | commitdiff | tree | snapshot
2022-10-28 Jim ProcterMerge branch 'bug/JAL-4083_exceptions_for_multiple_resi... commit | commitdiff | tree | snapshot
2022-10-28 Jim ProcterJAL-2349 allow contact matrix to provide labels for... commit | commitdiff | tree | snapshot
2022-10-28 Jim ProcterJAL-4086 commented out attempt to create measurement... commit | commitdiff | tree | snapshot
2022-10-28 Jim ProcterJAL-4089 use column selection to superpose if 4 or... commit | commitdiff | tree | snapshot
2022-10-28 Jim ProcterJAL-2961 centerViewOn command for structure viewers... commit | commitdiff | tree | snapshot
2022-10-28 Jim ProcterMerge branch 'features/r2_11_2_alphafold/JAL-2349_JAL... commit | commitdiff | tree | snapshot
2022-10-27 Ben SoaresJAL-4083 don't need globalUseScriptWait after all,... bug/JAL-4083_exceptions_for_multiple_residue_highlights_in_jmol commit | commitdiff | tree | snapshot
2022-10-27 Ben SoaresJAL-4083 only set globalUseScriptWait if needed commit | commitdiff | tree | snapshot
2022-10-27 Ben SoaresJAL-4083 Use jmolViewer.scriptWait instead of jmolViewe... commit | commitdiff | tree | snapshot
2022-10-26 Jim ProcterJAL-4086 quick and dirty mouseovers on ruler highlighti... commit | commitdiff | tree | snapshot
2022-10-26 Ben SoaresMerge branch 'features/r2_11_2_alphafold/JAL-2349_JAL... commit | commitdiff | tree | snapshot
2022-10-26 Ben SoaresJAL-3416 (and others) increasing number of STDERR lines... commit | commitdiff | tree | snapshot
2022-10-25 Ben SoaresJAL-3416 Making FlatLaF default for macs due to a probl... commit | commitdiff | tree | snapshot
2022-10-22 Jim ProcterJAL-2349 JAL-3855 highlight residues associated with... commit | commitdiff | tree | snapshot
2022-10-21 Jim ProcterJAL-2349 JAL-3855 fix failing tests commit | commitdiff | tree | snapshot
2022-10-21 Jim ProcterJAL-2349 JAL-3855 experiment masking hidden columns... commit | commitdiff | tree | snapshot
2022-10-21 Jim ProcterJAL-4033 - heuristic threshold for pAE matrix - mark... commit | commitdiff | tree | snapshot
2022-10-20 Jim ProcterJAL-2349 formatting/pick correct exception commit | commitdiff | tree | snapshot
2022-10-20 Jim ProcterJAL-2349 JAL-3855 off by one and daft return commit | commitdiff | tree | snapshot
2022-10-20 Jim ProcterJAL-2349 avoid div-by-zero when annotation height is... commit | commitdiff | tree | snapshot
2022-10-20 Jim ProcterJAL-2349 JAL-3855 adapt renderer for AlignmentI.getCont... commit | commitdiff | tree | snapshot
2022-10-20 Jim ProcterJAL-2349 JAL-3855 ContactListI.getPosition() to recover... commit | commitdiff | tree | snapshot
2022-10-20 Jim ProcterJAL-2349 JAL-3855 experimenting with filtering columns... commit | commitdiff | tree | snapshot
2022-10-20 Jim ProcterJAL-3855 JAL-2349 AlignmentI.getContactList takes care... commit | commitdiff | tree | snapshot
2022-10-20 Jim ProcterJAL-4033 fix drag selections and distinguish row/column... commit | commitdiff | tree | snapshot
2022-10-20 Jim ProcterJAL-2349 (still buggy) interactive selection - time... commit | commitdiff | tree | snapshot
2022-10-20 Jim ProcterJAL-2349 tooltip reports value from contact range commit | commitdiff | tree | snapshot
2022-10-20 Jim ProcterJAL-2349 adjusted range calculation to be inclusive... commit | commitdiff | tree | snapshot
2022-10-20 Jim ProcterJAL-2349 debugged click/drag and added yellow rubber... commit | commitdiff | tree | snapshot
2022-10-20 Jim ProcterJAL-2349 JAL-3855 - interactive point-wise row/column... commit | commitdiff | tree | snapshot
2022-10-20 Jim ProcterJAL-3855 RGB colours from the alphafold paE scale. commit | commitdiff | tree | snapshot
2022-10-19 Jim ProcterJAL-2349 JAL-4033 refactored contact matrix geom calc... commit | commitdiff | tree | snapshot
2022-10-17 Jim ProcterJAL-2349 JAL-3855 column selection highlighting commit | commitdiff | tree | snapshot
2022-10-17 Jim ProcterJAL-3855 bump AF version to 3 - keep contact renderer... commit | commitdiff | tree | snapshot
2022-10-17 Jim ProcterJAL-1551 formatting commit | commitdiff | tree | snapshot
2022-10-17 Jim ProcterJAL-2349 JAL-3855 tests that probably should be part... commit | commitdiff | tree | snapshot
2022-10-17 Jim ProcterJAL-3855 report download errors as errors! commit | commitdiff | tree | snapshot
2022-10-17 Jim ProcterJAL-2349 JAL-3855 Integrate pAE retrieval in StructureF... commit | commitdiff | tree | snapshot
2022-10-15 Jim ProcterJAL-2349 reusable contact map holder for SequenceI... commit | commitdiff | tree | snapshot
2022-10-15 Jim ProcterJAL-3855 2349 TODO commit | commitdiff | tree | snapshot
2022-10-15 Jim ProcterJAL-3855 import pAE when StructureSelectionManager... commit | commitdiff | tree | snapshot
2022-10-15 Jim ProcterJAL-3855 pAE v2 import commit | commitdiff | tree | snapshot
2022-10-14 Jim ProcterJAL-3855 refactor the pAE retrieval code so it can... commit | commitdiff | tree | snapshot
2022-10-14 Jim ProcterMerge branch 'features/JAL-3895_alphafoldcolours' into... commit | commitdiff | tree | snapshot
2022-10-14 Jim ProcterMerge branch 'develop' into features/JAL-3895_alphafold... features/JAL-3895_alphafoldcolours commit | commitdiff | tree | snapshot
2022-10-11 Jim ProcterJAL-4065 final fix for 2.11.2.5 - 5pm BST release commit | commitdiff | tree | snapshot
2022-10-11 Jim ProcterJAL-4065 revised to avoid a visit from the apostrophe... commit | commitdiff | tree | snapshot
2022-10-11 Jim ProcterJAL-4073 update tests commit | commitdiff | tree | snapshot
2022-10-11 Jim ProcterMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2022-10-11 Jim ProcterJAL-4073 fix PEBCAK failure commit | commitdiff | tree | snapshot
2022-10-11 Ben SoaresJAL-4014 Changed gecos display names to match labels... commit | commitdiff | tree | snapshot
2022-10-11 Jim ProcterJAL-4065 revised whatsNew to make sense ! commit | commitdiff | tree | snapshot
2022-10-11 Jim ProcterJAL-4065 release 2.11.2.5 date is 11th Oct commit | commitdiff | tree | snapshot
2022-10-07 Jim ProcterFix for JAL-4075 - don’t write a label in secondary... commit | commitdiff | tree | snapshot
2022-10-07 Jim ProcterJAL-4065 update citations for Pfam and Rfam and added... commit | commitdiff | tree | snapshot
2022-10-07 Jim ProcterJAL-4065 2.11.2.5 release version bump commit | commitdiff | tree | snapshot
2022-10-07 Jim ProcterJAL-4065 release notes and updated release date for... commit | commitdiff | tree | snapshot
2022-10-06 Jim Procterstable url for PFAM retrieval via interpro api :) JAL... commit | commitdiff | tree | snapshot
2022-10-06 Jim ProcterJAL-1551 formatting commit | commitdiff | tree | snapshot
2022-10-06 Jim ProcterJAL-3895 alphafold colours via pluggable annotation... commit | commitdiff | tree | snapshot
2022-10-06 Jim ProcterJAL-1551 formatting commit | commitdiff | tree | snapshot
2022-10-06 Jim ProcterJAL-4065 release notes for JAL-4073 JAL-4074 commit | commitdiff | tree | snapshot
2022-10-06 Jim ProcterJAL-4073 Pfam retrieval now works via a template includ... commit | commitdiff | tree | snapshot
2022-10-06 Jim ProcterPatch for JAL-4074 - any content ending in ‘gzip’ recog... commit | commitdiff | tree | snapshot
2022-09-16 Jim ProcterJAL-4065 release notes for JAL-4061 JAL-4062 features/JAL-4061_and_JAL-4062_findselectfeatures commit | commitdiff | tree | snapshot
2022-09-16 Jim ProcterJAL-4062 copy highlighted region docs, new Alignment... commit | commitdiff | tree | snapshot
2022-09-15 Jim ProcterJAL-4061 JAL-4062 documentation and button labels.... commit | commitdiff | tree | snapshot
2022-09-15 Jim ProcterJAL-4061 use alignment panel’s feature renderer to... commit | commitdiff | tree | snapshot
2022-09-15 Jim ProcterJAL-4061 support incremental search of features commit | commitdiff | tree | snapshot
2022-09-15 Jim ProcterJAL-4061 tests, bugfixes and TODOs for matching feature... commit | commitdiff | tree | snapshot
2022-09-15 Jim ProcterJAL-4062 avc operation and model method for copying... commit | commitdiff | tree | snapshot
2022-09-15 Jim ProcterMerge branch 'develop' into features/JAL-4061_and_JAL... commit | commitdiff | tree | snapshot
2022-09-15 Jim ProcterJAL-4065 release notes for JAL-4014 and JAL-4063 in... commit | commitdiff | tree | snapshot
2022-09-15 Jim ProcterJAL-4065 - new release notes featuring JAL-3612 fix commit | commitdiff | tree | snapshot
2022-09-14 Jim ProcterMerge branch 'bug/JAL-3612_overviewFeatureOrdering... commit | commitdiff | tree | snapshot
2022-09-14 Jim ProcterJAL-4061 JAL-4062 button in Find dialog to copy highlig... commit | commitdiff | tree | snapshot
2022-09-14 Jim ProcterJAL-4061 JAL-4062 Find can now search features commit | commitdiff | tree | snapshot
2022-08-23 Ben SoaresJAL-4014 JAL-4063 Added gecos colourScheme names (INFO... commit | commitdiff | tree | snapshot
2022-08-08 Jim ProcterJAL-4046 release on 9th August 2022 commit | commitdiff | tree | snapshot
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