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jalview.git
2015-09-08 Jim ProcterMerge branch 'develop' into release/2_9_documentation commit | commitdiff | tree | snapshot
2015-09-08 Jim ProcterJAL-1626 added missing gap character and fixed typo... commit | commitdiff | tree | snapshot
2015-09-08 tcofoegbumerge commit | commitdiff | tree | snapshot
2015-09-08 tcofoegbuupdated help to include BioJS option in export.html commit | commitdiff | tree | snapshot
2015-09-08 Jim ProcterMerge branch 'develop' into release/2_9_documentation commit | commitdiff | tree | snapshot
2015-09-08 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie... commit | commitdiff | tree | snapshot
2015-09-08 Jim ProcterMerge branch 'develop' into release/2_9_documentation commit | commitdiff | tree | snapshot
2015-09-08 Jim ProcterJAL-1551 crlf change commit | commitdiff | tree | snapshot
2015-09-08 tcofoegbucommited jmol/Jmol2.js diff with origin shows no change... commit | commitdiff | tree | snapshot
2015-09-08 tcofoegbuJAL-857 revert show equivalent decoration link commit | commitdiff | tree | snapshot
2015-09-08 tcofoegbumerge commit | commitdiff | tree | snapshot
2015-09-08 tcofoegbuJAL-857 removed 'development' as active link and added... commit | commitdiff | tree | snapshot
2015-09-08 Jim ProcterMerge branch 'develop' into release/2_9_documentation commit | commitdiff | tree | snapshot
2015-09-08 Jim ProcterJAL-1645 draft release notes for v2.9... commit | commitdiff | tree | snapshot
2015-09-08 gmungocJAL-1859 reverted to signed JalviewApplet.jar! commit | commitdiff | tree | snapshot
2015-09-08 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2015-09-08 gmungocJAL-1859 Jmol applet black background; fix _jvmols... commit | commitdiff | tree | snapshot
2015-09-08 tcofoegbumerge commit | commitdiff | tree | snapshot
2015-09-08 tcofoegbudeleted jbake example directory and the old biojs templ... commit | commitdiff | tree | snapshot
2015-09-07 gmungocJAL-1859 Jmol linked applet updated to use Jmol2.js commit | commitdiff | tree | snapshot
2015-09-07 Jim ProcterMerge branch 'features/JAL-857_dynamic-example-files... commit | commitdiff | tree | snapshot
2015-09-07 gmungocJAL-1636 translate stop codon as '*', mouseover * as... commit | commitdiff | tree | snapshot
2015-09-07 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2015-09-07 tcofoegbumerge commit | commitdiff | tree | snapshot
2015-09-07 tcofoegbuJAL-1831 updated BioJSON schema commit | commitdiff | tree | snapshot
2015-09-07 gmungocJAL-1152 check 'autocalculated' not 'null sequenceRef... commit | commitdiff | tree | snapshot
2015-09-07 Jim ProcterMerge branch 'features/JAL-857_dynamic-example-files... commit | commitdiff | tree | snapshot
2015-09-07 Jim ProcterJAL-1522 report commit id and branch in installation... commit | commitdiff | tree | snapshot
2015-09-07 Jim ProcterJAL-1522 make installation default 'applet' for the... commit | commitdiff | tree | snapshot
2015-09-07 Jim ProcterJAL-1701 added links to example files. will probably... commit | commitdiff | tree | snapshot
2015-09-06 Jim ProcterJAL-1655 transfer setting option only displayed in... commit | commitdiff | tree | snapshot
2015-09-06 Jim ProcterJAL-1368 JAL-1863 JAL-1304 reformatting and revision... commit | commitdiff | tree | snapshot
2015-09-06 Jim ProcterJAL-1368 JAL-1628 revise documentation in line with... commit | commitdiff | tree | snapshot
2015-09-06 Jim ProcterJAL-1645 JAL-1355 UI/i18n: added missing messages,... commit | commitdiff | tree | snapshot
2015-09-05 Jim ProcterJAL-1871 JAL-1553 don’t modify selection/view colour... commit | commitdiff | tree | snapshot
2015-09-05 Jim ProcterJAL-1871 choose a new RNA Helices palette when annotati... commit | commitdiff | tree | snapshot
2015-09-05 Jim ProcterJAL-1871 don’t change the palette every time an edit... commit | commitdiff | tree | snapshot
2015-09-05 Jim ProcterJAL-1871 reinstate random generation of palette when... commit | commitdiff | tree | snapshot
2015-09-05 Jim ProcterJAL-1869 make per-sequence RNA helix colours each time... commit | commitdiff | tree | snapshot
2015-09-05 Jim ProcterMerge branch 'bugfix/JAL-841_JAL-1081' into develop commit | commitdiff | tree | snapshot
2015-09-05 Jim ProcterJAL-1805 move misassigned test from Functional to Network commit | commitdiff | tree | snapshot
2015-09-05 Jim ProcterJAL-1233 tidy up and use same RNA helix colours in... commit | commitdiff | tree | snapshot
2015-09-05 Jim ProcterJAL-1081 JAL-891 don’t overwrite global colour scheme... commit | commitdiff | tree | snapshot
2015-09-05 Jim ProcterJAL-1081 JAL-841 JAL-1053 JAL-1081 use same selection... commit | commitdiff | tree | snapshot
2015-09-04 Jim ProcterJAL-1847 Merge branch 'thiago' into develop commit | commitdiff | tree | snapshot
2015-09-04 Jim ProcterJAL-1847 added AUTOSUPERIMPOSE property which can be... commit | commitdiff | tree | snapshot
2015-09-04 tcofoegbuJAL-793 added ability to visualise raw BioJSON in the... commit | commitdiff | tree | snapshot
2015-09-04 gmungocJAL-1859 jmolFindTarget not JmolFindTarget commit | commitdiff | tree | snapshot
2015-09-04 gmungocJAL-1859 embedded Jmol applet example updated for Jmol... commit | commitdiff | tree | snapshot
2015-09-03 Jim ProcterJAL-1863 allow RNA secondary structure rows exported... commit | commitdiff | tree | snapshot
2015-09-03 Jim ProcterJAL-961 efficiency TODO: decouple overview updates... commit | commitdiff | tree | snapshot
2015-09-03 Jim ProcterJAL-1680 JAL-1576 JAL-1233 all conservation and consens... commit | commitdiff | tree | snapshot
2015-09-03 Jim ProcterJAL-1576 fix: trigger broadcast of colour change with... commit | commitdiff | tree | snapshot
2015-09-03 Jim ProcterJAL-961 TODO use workers for calculations supporting... commit | commitdiff | tree | snapshot
2015-09-03 Jim ProcterJAL-1551 source tidy commit | commitdiff | tree | snapshot
2015-09-03 Jim ProcterJAL-1550 JAL-1551 formatting commit | commitdiff | tree | snapshot
2015-09-03 Jim ProcterJAL-1233 JAL-1576 copy constructor to propagate helix... commit | commitdiff | tree | snapshot
2015-09-03 tcofoegbumerge features/JAL-857_dynamic-example-files commit | commitdiff | tree | snapshot
2015-09-03 tcofoegbuJAL-1859 JAL-857 house keeping commit | commitdiff | tree | snapshot
2015-09-03 tcofoegbuJAL-1859 JAL-857 updated all reference of JmolApplet... commit | commitdiff | tree | snapshot
2015-09-03 tcofoegbuhouse keeping commit | commitdiff | tree | snapshot
2015-09-03 tcofoegbumerge commit | commitdiff | tree | snapshot
2015-09-03 tcofoegbuJAL-1861 disable the action buttons for 1500 millisec... commit | commitdiff | tree | snapshot
2015-09-03 gmungocJAL-1859 removed unneeded dependency on package not... commit | commitdiff | tree | snapshot
2015-09-03 tcofoegbuanother merge from develop commit | commitdiff | tree | snapshot
2015-09-03 tcofoegbuupdated examples index page commit | commitdiff | tree | snapshot
2015-09-03 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2015-09-03 gmungocJAL-1690 scaleProteinAsCdna new optional attribute... commit | commitdiff | tree | snapshot
2015-09-03 tcofoegbumerge commit | commitdiff | tree | snapshot
2015-09-03 tcofoegbuJAL-793 use default custom export settings for html... commit | commitdiff | tree | snapshot
2015-09-03 tcofoegbuJAL-857 increased callback timeout to accomodated apple... commit | commitdiff | tree | snapshot
2015-09-03 gmungocJAL-1828 lookup table to convert MSE to MET when parsin... commit | commitdiff | tree | snapshot
2015-09-03 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2015-09-03 tcofoegbumerge from develop commit | commitdiff | tree | snapshot
2015-09-02 tcofoegbuJAL-1835 updated documentation in preferences commit | commitdiff | tree | snapshot
2015-09-02 tcofoegbuJAL-1740 migrated BioJSMSAViewer git repo to https... commit | commitdiff | tree | snapshot
2015-09-02 tcofoegbumerge commit | commitdiff | tree | snapshot
2015-09-02 tcofoegbuJAL-1805 JAL-1700 house keeping commit | commitdiff | tree | snapshot
2015-09-02 tcofoegbuJAL-1739 reverted BioJSON schema to use one main versio... commit | commitdiff | tree | snapshot
2015-09-02 gmungocJAL-1544 spelling commit | commitdiff | tree | snapshot
2015-09-02 gmungocJAL-1355 User error text externalised to message bundle commit | commitdiff | tree | snapshot
2015-09-02 gmungocJAL-1768 set initial 'enabled' state for id width label... commit | commitdiff | tree | snapshot
2015-09-02 gmungocJAL-1264 test made i18n robust commit | commitdiff | tree | snapshot
2015-09-02 gmungocJAL-1768 enable fixed width output when auto-width... commit | commitdiff | tree | snapshot
2015-09-02 gmungocJAL-1843 fixed input/add from textbox; added @Override... commit | commitdiff | tree | snapshot
2015-09-02 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2015-09-02 tcofoegbumerge commit | commitdiff | tree | snapshot
2015-09-02 tcofoegbuJAL-1805 JAL-1782 added a draft documentation for TestN... commit | commitdiff | tree | snapshot
2015-09-02 Jim ProcterJAL-1853 add test to list for ant task commit | commitdiff | tree | snapshot
2015-09-02 gmungocJAL-1619 additions, standardised menu item symbols commit | commitdiff | tree | snapshot
2015-09-02 gmungocJAL-1681 mention of cDNA consensus added commit | commitdiff | tree | snapshot
2015-09-02 Jim ProcterJAL-535 todo: refactor logic to desktop controller... commit | commitdiff | tree | snapshot
2015-09-02 Jim ProcterJAL-1772 non-functional test added. not doing any more... commit | commitdiff | tree | snapshot
2015-09-02 gmungocJAL-1673 new test to verify transferRESNUMFeatures() commit | commitdiff | tree | snapshot
2015-09-02 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2015-09-01 Jim ProcterMerge branch 'bug/JAL-1853_gapchar_output' into develop commit | commitdiff | tree | snapshot
2015-09-01 Jim ProcterJAL-1853 add test to Functional group commit | commitdiff | tree | snapshot
2015-09-01 Jim ProcterJAL-1853 make getVisibleSeqs more memory efficient... commit | commitdiff | tree | snapshot
2015-09-01 Jim ProcterJAL-1853 refactor clip routine from getSequenceStrings commit | commitdiff | tree | snapshot
2015-09-01 Jim Procterpatch for JAL-1853 - use given gap character to reconst... commit | commitdiff | tree | snapshot
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