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jalview.git
2021-10-19 Mateusz WarownyJAL-3878 Fix sequences not being gathered when submitti... commit | commitdiff | tree | snapshot
2021-10-19 Mateusz WarownyJAL-3878 Rename annotation provider method to getAnnota... commit | commitdiff | tree | snapshot
2021-10-19 Mateusz WarownyJAL-3878 Set job status to cancelled on job cancellation. commit | commitdiff | tree | snapshot
2021-10-19 Mateusz WarownyJAL-3878 Start interactive job by registering them... commit | commitdiff | tree | snapshot
2021-10-19 Mateusz WarownyJAL-3878 Fix progress updater bar to account for cancel... commit | commitdiff | tree | snapshot
2021-10-19 Mateusz WarownyJAL-3878 Refactoring SeqAnnotationServiceCalcWorker. commit | commitdiff | tree | snapshot
2021-10-13 Mateusz WarownyJAL-3878 Add getCalcName to AlignCalcWorkerI. commit | commitdiff | tree | snapshot
2021-10-13 Mateusz WarownyJAL-3878 Rename web service worker to more generic... commit | commitdiff | tree | snapshot
2021-10-09 Mateusz WarownyUpdate annotation operation WIP commit | commitdiff | tree | snapshot
2021-10-07 Mateusz WarownyJAL-3878 Add dataset and viewport arguments to ResultSu... commit | commitdiff | tree | snapshot
2021-10-05 Mateusz WarownyJAL-3878 Annotation operation skeleton. commit | commitdiff | tree | snapshot
2021-10-01 Mateusz WarownyJAL-3878 Fix workers done condition to account for... commit | commitdiff | tree | snapshot
2021-09-30 Mateusz WarownyJAL-3878 Skip getting results of failed jobs. commit | commitdiff | tree | snapshot
2021-09-30 Mateusz WarownyJAL-3878 Add job log messages reporting. commit | commitdiff | tree | snapshot
2021-09-30 Mateusz WarownyJAL-3878 Fix null pointer exception when preparing... commit | commitdiff | tree | snapshot
2021-09-30 Mateusz WarownyJAL-3878 Fetch sequences for alignment on menu action... commit | commitdiff | tree | snapshot
2021-09-30 Mateusz WarownyJAL-3878 Split web services menu entries by programs... commit | commitdiff | tree | snapshot
2021-09-29 Mateusz WarownyJAL-3878 Add isInteractive() method to Operation interface. commit | commitdiff | tree | snapshot
2021-09-29 Mateusz WarownyJAL-3878 Add getName() to Operation interface. commit | commitdiff | tree | snapshot
2021-09-27 Mateusz WarownyJAL-3878 Wire web services logic to UI elements. commit | commitdiff | tree | snapshot
2021-09-24 Mateusz WarownyJAL-3878 Fire service changed event after discovery... commit | commitdiff | tree | snapshot
2021-09-24 Mateusz WarownyJAL-3878 Fix incorrect value of isRunning in SlivkaWSDi... commit | commitdiff | tree | snapshot
2021-09-24 Mateusz WarownyJAL-3878 Move operation type from WebService to Operation. commit | commitdiff | tree | snapshot
2021-09-24 Mateusz WarownyJAL-3878 Code reformatting. commit | commitdiff | tree | snapshot
2021-09-24 Mateusz WarownyJAL-3878 Display results of completed alignment job commit | commitdiff | tree | snapshot
2021-09-24 Mateusz WarownyJAL-3878 Change SERVER_ERROR.isSubmitted to false. commit | commitdiff | tree | snapshot
2021-09-24 Mateusz WarownyJAL-3878 Move WSJob instantiation out of WebService... commit | commitdiff | tree | snapshot
2021-09-20 Mateusz WarownyJAL-3878 Implement AlignmentOperation WIP commit | commitdiff | tree | snapshot
2021-09-20 Mateusz WarownyJAL-3878 Create interface for web service operations commit | commitdiff | tree | snapshot
2021-09-20 Mateusz WarownyJAL-3878 Implement slivka web service and discoverer. commit | commitdiff | tree | snapshot
2021-09-20 Mateusz WarownyJAL-3878 Add web service executor class and instantiate... commit | commitdiff | tree | snapshot
2021-09-20 Mateusz WarownyJAL-3878 Create base interfaces for new web services. commit | commitdiff | tree | snapshot
2021-09-20 Mateusz WarownyJAL-3878 Remove throws declaration from param store... commit | commitdiff | tree | snapshot
2021-09-20 Mateusz WarownyJAL-3878 Create Slivka Web Service adapter. commit | commitdiff | tree | snapshot
2021-09-20 Mateusz WarownyJAL-3878 Initial preparation. commit | commitdiff | tree | snapshot
2021-07-29 Mateusz WarownyMerge branch 'improvement/JAL-3848_slivka_0.8' into... commit | commitdiff | tree | snapshot
2021-07-27 Mateusz WarownyMerge branch 'bug/JAL-3807_jpred-with-slivka' into... commit | commitdiff | tree | snapshot
2021-07-27 Mateusz WarownyMerge commit '0b438477b16470202bddfecb54e0587036b37202... commit | commitdiff | tree | snapshot
2021-07-27 Mateusz WarownyJAL-3066 Fix NullPointerException thrown when showing... commit | commitdiff | tree | snapshot
2021-07-25 Jim ProcterJAL-3854 patched SeqSeqUtils.deUniquify to not use... improvement/JAL-3848_slivka_0.8 commit | commitdiff | tree | snapshot
2021-07-25 Jim ProcterJAL-2994 disable tests for FileUtils path search method... commit | commitdiff | tree | snapshot
2021-07-25 Jim ProcterJAL-3848 slivka preferences in javascript commit | commitdiff | tree | snapshot
2021-07-25 Jim ProcterJAL-3848 reinstate Fetch DB References submenu commit | commitdiff | tree | snapshot
2021-07-25 Jim ProcterJAL-3848 update jalview core with slivka classes, examp... commit | commitdiff | tree | snapshot
2021-07-25 Jim ProcterJAL-3848 add compbio and jalview to direct connection... commit | commitdiff | tree | snapshot
2021-07-25 Jim ProcterJAL-3853 - tweak test again - since failed a few commit... commit | commitdiff | tree | snapshot
2021-07-25 Jim ProcterJAL-3848 update swingJS runtime and transpiler to 3.3.1 commit | commitdiff | tree | snapshot
2021-07-25 Jim ProcterMerge branch 'improvement/JAL-3848_slivka_0.8' of https... commit | commitdiff | tree | snapshot
2021-07-23 Mateusz WarownyJAL-3848 Update slivka client javajs library. commit | commitdiff | tree | snapshot
2021-07-22 Jim ProcterJAL-3671 hardwire log4j.root logger to INFO to supress... commit | commitdiff | tree | snapshot
2021-07-22 Jim ProcterJAL-3848 enable slivka services dialog in JalviewJS commit | commitdiff | tree | snapshot
2021-07-22 Jim ProcterJAL-3853 JAL-1870 toggle to enable/disable posterior... commit | commitdiff | tree | snapshot
2021-07-22 Jim ProcterJAL-3853 JAL-1870 patch tests for annotation colour... commit | commitdiff | tree | snapshot
2021-07-22 Jim ProcterJAL-1950 patch groovy bootstrap for importing hmmer3... commit | commitdiff | tree | snapshot
2021-07-22 Jim ProcterJAL-3853 patch sequence annotation report code and... commit | commitdiff | tree | snapshot
2021-07-22 Jim ProcterJAL-3848 ensure annotation from a service gets a calcId... commit | commitdiff | tree | snapshot
2021-07-22 Jim ProcterJAL-3848 don’t include sequence limits in sequence... commit | commitdiff | tree | snapshot
2021-07-22 Jim ProcterJAL-3848 - actually test the Slivka and JABAWS disorder... commit | commitdiff | tree | snapshot
2021-07-21 Mateusz WarownyJAL-3848 print exception for failed align jobs commit | commitdiff | tree | snapshot
2021-07-21 Mateusz WarownyJAL-3848 add latest slivka-client fixes. commit | commitdiff | tree | snapshot
2021-07-09 Mateusz WarownyMerge branch 'jpred-fix' into bug/JAL-3807_jpred-with... bug/JAL-3807_jpred-with-slivka commit | commitdiff | tree | snapshot
2021-07-09 Mateusz WarownyJAL-3807 Fix SlivkaWSInstance not fetching alignments. commit | commitdiff | tree | snapshot
2021-07-09 Mateusz WarownyMerge branch 'bug/JAL-3849_aacon-parameters' into impro... commit | commitdiff | tree | snapshot
2021-07-09 Mateusz WarownyJAL-3690 Remove references to old AlignCalcManager. bug/JAL-3849_aacon-parameters commit | commitdiff | tree | snapshot
2021-07-08 Mateusz WarownyJAL-3848 SlivkaParamSet: reformat code and add service... commit | commitdiff | tree | snapshot
2021-07-08 Mateusz WarownyJAL-3848 Update slivka client library. commit | commitdiff | tree | snapshot
2021-07-08 Mateusz WarownyJAL-3849 Remove join() which blocked the ui. commit | commitdiff | tree | snapshot
2021-02-22 Mateusz WarownyJAL-3807 - Add single sequence capabilities to jws2... commit | commitdiff | tree | snapshot
2021-02-22 Mateusz WarownyJAL-3807 - Move new JPred client to the jws2 package. commit | commitdiff | tree | snapshot
2021-02-22 Mateusz WarownyJAL-3807 - Re-implement results processing. commit | commitdiff | tree | snapshot
2021-02-22 MateuszJAL-3807 JPred can now successfully submit and track... commit | commitdiff | tree | snapshot
2021-02-22 Mateusz WarownyMerge branch 'bug/JAL-3809_ws_params_dialog_fix' into... commit | commitdiff | tree | snapshot
2021-02-22 Mateusz WarownyMerge branch 'bug/JAL-3810_annotation_ws_stopping_abrup... bug/JAL-3809_ws_params_dialog_fix commit | commitdiff | tree | snapshot
2021-02-22 Mateusz WarownyJAL-3809 - Fixed param edit dialog for jalviewjs. commit | commitdiff | tree | snapshot
2021-02-22 Mateusz WarownyMerge branch 'feature/JAL-3690_callback-based-web-servi... commit | commitdiff | tree | snapshot
2021-02-22 MateuszMerge branch 'feature/JAL-3690_callback-based-web-servi... commit | commitdiff | tree | snapshot
2021-02-05 Mateusz WarownyJAL-3810 - Add trace method to javascript implementatio... bug/JAL-3810_annotation_ws_stopping_abruptly commit | commitdiff | tree | snapshot
2021-02-05 Mateusz WarownyJAL-3810 - Replace log.trace() calls with log.debug() commit | commitdiff | tree | snapshot
2021-01-27 MateuszJAL-3690 Introduce AlignCalcManager2 tests. feature/JAL-3690_callback-based-web-services commit | commitdiff | tree | snapshot
2021-01-22 MateuszMerge branch 'Jalview-JS/develop' into feature/JAL... commit | commitdiff | tree | snapshot
2021-01-22 MateuszJAL-3690 AlignCalcManager - add full support for onesho... commit | commitdiff | tree | snapshot
2021-01-22 MateuszJAL-3690 AACon ws menu entry fix. commit | commitdiff | tree | snapshot
2021-01-22 MateuszJAL-3690 Allow unregistered workers to be run with... commit | commitdiff | tree | snapshot
2021-01-22 MateuszJAL-3690 Fix typo in enum name in slivka client. commit | commitdiff | tree | snapshot
2021-01-22 MateuszJAL-3690 Fixed slivka wsmenu categories. commit | commitdiff | tree | snapshot
2021-01-18 MateuszMerge remote-tracking branch 'origin/merge/Jalview... commit | commitdiff | tree | snapshot
2021-01-12 Ben SoaresJAL-3789 Use j2s.config.altfileproperty in .j2s for... Jalview-JS/develop commit | commitdiff | tree | snapshot
2021-01-12 Ben SoaresJAL-3789 New swingjs for Java2Script 3.2.10 with j2s... commit | commitdiff | tree | snapshot
2020-12-18 Jim ProcterJAL-3690 recoded AWSThread to use javax.swing.Timer... merge/Jalview-JS/develop_feature/JAL-3690_callback-based-web-services commit | commitdiff | tree | snapshot
2020-12-17 Jim ProcterJAL-3690 patch out use of java.streams/spliterator... commit | commitdiff | tree | snapshot
2020-12-15 Jim ProcterJAL-3690 tweak J2S direct DB access registration for... commit | commitdiff | tree | snapshot
2020-12-15 Jim ProcterJAL-3690 direct access to slivka, compbio, jalview... commit | commitdiff | tree | snapshot
2020-12-15 Jim ProcterJAL-3690 patch out need for java.time in j2s (see https... commit | commitdiff | tree | snapshot
2020-12-15 Jim ProcterJAL-3690 patch out spinning animation for web service... commit | commitdiff | tree | snapshot
2020-12-15 Jim ProcterJAL-3690 disable proxy server for JalviewJS commit | commitdiff | tree | snapshot
2020-12-14 Jim ProcterMerge branch 'Jalview-JS/develop' into merge_js_develop commit | commitdiff | tree | snapshot
2020-12-14 Jim ProcterMerge branch 'Jalview-JS/develop_j2s_v3_2_9_j11' into... commit | commitdiff | tree | snapshot
2020-12-11 MateuszJAL-3690 Let's enable web services (seriously this... commit | commitdiff | tree | snapshot
2020-12-10 Jim ProcterJAL-3223 - update swingjs to 3.2.9-j11 Jalview-JS/develop_j2s_v3_2_9_j11 commit | commitdiff | tree | snapshot
2020-11-27 Mateusz WaronwyJAL-3690 List.copyOf() workaround commit | commitdiff | tree | snapshot
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