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jalview.git
2018-04-05
Jim Procter
JAL-2945 provide access to last highlighted results
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2018-04-05
Jim Procter
JAL-2944 open selected structures in existing or a...
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2018-04-05
Jim Procter
JAL-2944 combo box to pick which viewer to load structu...
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2018-04-05
Jim Procter
JAL-2944 methods to check existence and get a title...
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2018-04-05
Jim Procter
JAL-2944 allow StructureViewer proxy to be created...
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2018-04-05
Jim Procter
JAL-2944 get viewer’s title via toString()
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2018-04-05
Jim Procter
JAL-2944 expose UI update methods in api
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2018-04-05
Jim Procter
JAL-2944 remove modal prompt logic and expose methods...
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2018-04-05
Jim Procter
JAL-2944 pull up structure viewer discovery routine...
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2018-03-22
gmungoc
JAL-2929 unit test, tidy unused/unneeded fields/parameters
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2018-03-21
Jim Procter
Merge branch 'patch/JAL-2754_patch2104forJava8' into...
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2018-03-21
Jim Procter
JAL-2754 don’t use deprecated api for getting font...
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2018-03-21
Jim Procter
JAL-2754 fix eclipse compilation error about referencin...
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2018-03-21
gmungoc
JAL-2929 use configure Overview gap colour instead...
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2018-03-21
Jim Procter
Merge branch 'patch/JAL-2754_patch2104forJava8' into...
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2018-03-21
Jim Procter
JAL-2754 dont put '<>' in <echo> text!
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2018-03-21
Jim Procter
Merge branch 'patch/JAL-2754_patch2104forJava8' into...
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2018-03-21
Jim Procter
JAL-2754 clean up proguard path spec and config variables
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2018-03-21
gmungoc
JAL-2754 renamed proguard.jar to include version number
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2018-03-21
gmungoc
JAL-2754 5.3.3 update of proguard.jar
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2018-03-21
gmungoc
JAL-2754 update to specify Java 1.8(+)
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2018-03-21
gmungoc
JAL-2754 update to Java 1.8
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2018-03-16
gmungoc
JAL-2922 update FeatureRenderer and repaint feature...
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2018-03-15
gmungoc
JAL-2893 enabling Get Crossreferences to ENSEMBLGENOMES
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2018-03-14
gmungoc
JAL-2893 include ENSEMBLGENOMES as a 'roundtrip db...
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2018-03-14
gmungoc
JAL-2679 reinstating changes lost in VCF merge
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2018-03-14
Jim Procter
JAL-2930 JAL-2924 JAL-2913 JAL-2926 JAL-2906 2.10.4...
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2018-03-13
gmungoc
JAL-2913 use FIGURE_FIXEDIDWIDTH (not FIGURE_USERIDWIDTH)
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2018-03-08
gmungoc
JAL-2885 tests updated for code changes
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2018-03-08
gmungoc
JAL-2930 use MouseWheelEvent.getPreciseWheelRotation...
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2018-03-07
gmungoc
Merge branch 'bugs/JAL-2922' into releases/Release_2_10...
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2018-03-07
gmungoc
JAL-2922 [2] not [1] for Boolean column of table
bugs/JAL-2922
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2018-03-07
gmungoc
Merge branch 'bugs/JAL-2922' into releases/Release_2_10...
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2018-03-07
gmungoc
JAL-2922 i18n and bespoke handler for Invert Selection
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2018-03-07
gmungoc
Merge branch 'bug/JAL-2924nullTooltip' into releases...
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2018-03-07
gmungoc
JAL-2926 fix copy group consensus (and paste sequence...
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2018-03-07
gmungoc
JAL-2925 handle empty annotation when copying group...
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2018-03-07
gmungoc
JAL-2913 use FIGURE_USERIDWIDTH for fixed id width...
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2018-02-28
gmungoc
JAL-2924 no tooltip over null annotation positions
bug/JAL-2924nullTooltip
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2018-02-28
Jim Procter
Merge branch 'releases/Release_2_10_4_Branch_merged_JAL...
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2018-02-27
Jim Procter
JAL-2759 release notes for 2.10.4
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2018-02-27
Jim Procter
Merge branch 'feature/JAL-2759' into merge/JAL-2759_2104
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2018-02-27
Jim Procter
fix for JAL-2922 - update states all at once and then...
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2018-02-26
Jim Procter
Merge branch 'feature/JAL-984splitAdjuster' into releas...
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2018-02-26
Jim Procter
JAL-984 remove all references to idwidth.gif - in build...
feature/JAL-984splitAdjuster
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2018-02-23
Jim Procter
JAL-2885 release notes
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2018-02-23
Jim Procter
Merge branch 'features/JAL-2885UniprotHttps' into relea...
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2018-02-23
Jim Procter
JAL-2885 xfam https
features/JAL-2885UniprotHttps
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2018-02-23
Jim Procter
JAL-2885 XFAM_DOMAIN->XFAM_BASEURL
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2018-02-23
Jim Procter
JAL-2885 Ensembl* -> https
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2018-02-23
Jim Procter
JAL-2885 ENSEMBL-DOMAIN -> ENSEMBL-BASEURL
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2018-02-23
Jim Procter
JAL-2885 renamed base URL getter from getDomain..
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2018-02-22
Jim Procter
Merge branch 'feature/JAL-984splitAdjuster' into releas...
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2018-02-22
Jim Procter
JAL-984 ID width adjuster needs to be white !
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2018-02-22
Jim Procter
JAL-2666 release notes
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2018-02-22
Jim Procter
Merge branch 'bug/JAL-2666' into releases/Release_2_10_...
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2018-02-22
Jim Procter
Merge branch 'feature/JAL-984splitAdjuster' into releas...
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2018-02-22
Jim Procter
JAL-984 remove all references to idwidth.gif and use...
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2018-02-22
Jim Procter
JAL-2906 typo fixes
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2018-02-22
Jim Procter
JAL-984 release notes
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2018-02-22
Jim Procter
Merge branch 'feature/JAL-984splitAdjuster' into releas...
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2018-02-22
Jim Procter
JAL-294 remove unneeded paint() method
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2018-02-22
Jim Procter
JAL-984 remove commented/unnecessary if clause
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2018-02-21
Jim Procter
JAL-2906 release notes for 2.10.4
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2018-02-21
Jim Procter
Merge branch 'bug/JAL-2778again' into releases/Release_...
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2018-02-21
Jim Procter
JAL-2778 reinstate transparent windows to avoid ugly...
bug/JAL-2778again
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2018-02-21
kiramt
JAL-2778 Adjust cursor changes in overview panel
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2018-02-21
kiramt
JAL-2778 Revert back to old synchronisation
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2018-02-20
Jim Procter
Merge branch 'bugs/JAL-2780_JAL-2781_pdbnegativenums...
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2018-02-15
Jim Procter
Merge branch 'develop' into releases/Release_2_10_4_Branch
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2018-02-15
Jim Procter
JAL-2906 bump release version and cut new release note...
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2018-02-13
Jim Procter
JAL-2780 scan all test IDs before testing and reporting...
bugs/JAL-2780_JAL-2781_pdbnegativenums
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2018-02-13
Jim Procter
JAL-2780 SequenceI.findFeatures takes column numbers...
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2018-02-13
Jim Procter
JAL-2780 JAL-2781 don’t create a mapping if sequence...
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2018-02-13
Jim Procter
JAL-2780 JAL-2781 only create a mapping entry or write...
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2018-02-13
Jim Procter
JAL-2781 JAL-2780 include sequence start number when...
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2018-02-13
Jim Procter
JAL-2781 ensure Trim is disabled before test starts
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2018-02-13
Jim Procter
JAL-2781 refactor ‘trim retrieved sequence’ preference...
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2018-02-13
Jim Procter
JAL-2781 null local siftsClient variable if exception...
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2018-02-13
Jim Procter
JAL-2781 refactor StructureSelectionManager.siftsClient...
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2018-02-13
Jim Procter
JAL-2781 FIXME: value of sourceType parameter always...
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2018-02-13
Jim Procter
JAL-2781 refactor possibly non-functional ‘extract...
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2018-02-13
Jim Procter
JAL-2781 tidy up comments on getMapping/computeMapping
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2018-02-13
Jim Procter
JAL-2781 report exactly which residues do not receive...
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2018-02-13
Jim Procter
JAL-2905 added additional jvmarg for testng task condit...
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2018-02-12
Jim Procter
JAL-2780 JAL-2781 extra column in mapping array
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2018-02-12
Jim Procter
JAL-2904 JAL-2780 JAL-2781 update JmolCommandsTest...
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2018-02-12
Jim Procter
JAL-2780 JAL-2781 ahem - add a semicolon if there isn...
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2018-02-12
Jim Procter
JAL-2780 use value of ’UNASSIGNED’ constant in assert...
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2018-02-12
Jim Procter
JAL-2904 replaced assert for (getEnd()-getStart()+1...
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2018-02-11
Jim Procter
JAL-2781 use SIFTs mapping rather than maxChain AlignSe...
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2018-02-11
Jim Procter
JAL-2780 JAL-2781 use PDBe numbering to map between...
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2018-02-11
Jim Procter
JAL-2781 mark aligned positions via StructureMapping...
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2018-02-11
Jim Procter
JAL-2780 JAL-2781 include a Mapping object in Structure...
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2018-02-11
Jim Procter
JAL-2780 JAL-2781 UNASSIGNED positions marked as Intege...
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2018-02-11
Jim Procter
JAL-2781 fix test data for full length annotation
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2018-02-09
gmungoc
JAL-2789 avoid using transcript (with no UTR) as CDS...
bug/JAL-2666
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2018-02-09
gmungoc
JAL-2789 code format changes only (before functional...
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2018-02-09
gmungoc
JAL-2666 fix failure to scroll split alignment of height 1
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2018-02-09
Jim Procter
Use the “PDBe” or “PDB” numbering (starts from 1, corre...
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