jalview.git
2018-07-23 Jim ProcterJAL-3070 refactored JABAWS specific jalview.gui.WsJobPa...
2018-07-23 Jim Procter final merge for merge/wsinterfaces_mchmmer_JAL-3070_JA...
2018-07-23 Jim ProcterMerge branch 'features/mchmmer' into merge/wsinterfaces...
2018-07-20 Jim ProcterJAL-3070 pull up hostURL and postURL to UIinfo and...
2018-07-20 Jim ProcterJAL-3070 core service descriptors for JABAWS services...
2018-07-20 Jim ProcterJAL-3070 refactored base analysis action descriptor...
2018-07-12 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie...
2018-07-02 Jim ProcterMerge branch 'task/JAL-3047_clovercoverage' into develop
2018-07-02 Jim ProcterJAL-3047 don’t let the makedist task complete if a...
2018-07-02 Jim ProcterJAL-3047 ‘cloverclasses’ build directory for instrument...
2018-06-27 Jim ProcterJAL-3047 enable clover for testng
2018-06-27 Jim ProcterJAL-3047 ignore clover output dir
2018-06-27 Jim ProcterJAL-3047 ant -Dclover.jar=../path/to/clover/lib/clover...
2018-06-26 Jim ProcterMerge branch 'task/JAL-3042_remove_SimpleDocument_depen...
2018-06-26 Jim ProcterJAL-3042 remove mention of adjustable search box histor...
2018-06-26 Jim ProcterJAL-3042 don't allow user to change default history...
2018-06-26 Jim ProcterJAL-3035 removed jdas in libs documentation and noted...
2018-06-26 Jim ProcterMerge branch 'tasks/JAL-3035_remove_dasobert_dependency...
2018-06-26 Jim ProcterJAL-3035 documentation in 2.11 release notes (and 2...
2018-06-26 Jim ProcterJAL-3035 remove DAS UI documentation
2018-06-26 Jim ProcterMerge branch 'tasks/JAL-3035_remove_dasobert_dependency...
2018-06-26 Jim ProcterJAL-3035 - jalview-das is no more !
2018-06-26 Jim ProcterJAL-3035 (unrelated) random XML error in nbbuild.xml
2018-06-07 gmungocJAL-2755 correct Javadoc and error handling
2018-06-06 gmungocJAL-3013 resolve symlink to hmmer binaries folder features/mchmmer
2018-06-06 gmungocMerge branch 'develop' into features/mchmmer
2018-06-06 gmungocJAL-3013 ensure Chimera as a symlink gets resolved
2018-06-06 gmungocJAL-2956 don't load (non-existent) HMMER jar entry...
2018-06-05 gmungocJAL-3011 include annotation scores in sequence id toolt...
2018-06-05 gmungocMerge branch 'develop' into features/mchmmer
2018-06-04 gmungocJAL-2808 update test for revised treatment of 'mixed...
2018-06-04 gmungocJAL-3019 correctly form toRange of 'traversed' MapList
2018-06-04 gmungocJAL-3018 updated REST versions to 6.3
2018-05-31 gmungocJAL-2808 don't capture or report min-max for mixed...
2018-05-31 gmungocJAL-2808 pre-fill numeric inequality filter with min...
2018-05-30 gmungocJAL-2629 suppress 'Add Database' menu option in favour...
2018-05-30 gmungocJAL-3005 JAL-2629 file chooser argument for HMM search...
2018-05-30 gmungocJAL-3005 JAL-3008 render file chooser and radio button...
2018-05-30 gmungocJAL-3008 new parameter type RadioChoiceParameter
2018-05-30 gmungocJAL-3005 new argument type FileParameter for file chooser
2018-05-29 gmungocJAL-3005 refactor updateRecentlyOpened to enable reuse
2018-05-29 Mungo CarstairsJAL-2994 utility method to match a list of folder/file...
2018-05-28 gmungocJAL-2994 restrict search to \Program Files\Chimera*
2018-05-28 gmungocJAL-2994 use pattern matches to search for chimera.exe
2018-05-28 gmungocMerge branch 'develop' into features/mchmmer
2018-05-28 gmungocMerge branch 'bug/JAL-797' into develop
2018-05-28 gmungocMerge remote-tracking branch 'origin/releases/Release_2...
2018-05-26 Jim ProcterJAL-2999 release date for 2.10.4b1 set for 27th May...
2018-05-25 Jim ProcterMerge branch 'documentation/JAL-2999_r2104b1' into...
2018-05-25 Jim ProcterMerge branch 'bug/JAL-2992panelHeight' into releases...
2018-05-25 Jim ProcterMerge branch 'bug/JAL-1460_dragndropWindows' into relea...
2018-05-25 gmungocJAL-2992 simpler heuristic for available height bug/JAL-2992panelHeight
2018-05-25 Jim ProcterMerge branch 'bug/JAL-2991_exporttosvgwrapview' into...
2018-05-25 Jim ProcterMerge branch 'feature/JAL-2994chimeraPath' into release...
2018-05-25 Jim ProcterJAL-1460 clarify release notes - and mention that short...
2018-05-25 Jim ProcterJAL-2994 add a few future release points for good measu... feature/JAL-2994chimeraPath
2018-05-25 Jim ProcterJAL-1460 temp variable for clearer conditional and... bug/JAL-1460_dragndropWindows
2018-05-25 Jim ProcterJAL-1460 javadoc
2018-05-25 gmungocJAL-2995 tooltip on fields with double-click to browse...
2018-05-25 gmungocJAL-2994 temporary patch with paths to Chimera for...
2018-05-24 Jim ProcterJAL-2999 issues resolved (or nearly so) for 2.10.4b1
2018-05-24 gmungocJAL-2997 additional tests
2018-05-24 Jim ProcterJAL-1460 tidied up the use of windows link file parser
2018-05-24 Jim ProcterJAL-1460 more complete drag'n'drop debugging info and...
2018-05-24 Jim ProcterJAL-1460 process .lnk files dragged to Jalview when...
2018-05-24 Jim ProcterJAL-1460 new data flavor for URLs added belt-and-braces...
2018-05-23 gmungocJAL-2993 AlignFrame listen for keystrokes in OverviewPanel
2018-05-23 gmungocJAL-2997 unit test
2018-05-23 Jim Procterfix for JAL-2991 - we could do better :/ bug/JAL-2991_exporttosvgwrapview
2018-05-23 gmungocJAL-2997 handle tab-delimited trailing column number...
2018-05-23 Jim ProcterJAL-2999 release notes and version bump for jalview...
2018-05-23 Jim ProcterJAL-2895 replace $$Jalview-Version$$ in help.jhm with...
2018-05-22 gmungocJAL-2716 fix to reset choice parameter on Revert
2018-05-22 gmungocJAL-2716 fix broken checkIfModified behaviour
2018-05-22 gmungocJAL-2629 method refactor and menu tidying
2018-05-21 gmungocJAL-797 Cmd-W act WHEN_IN_FOCUSED_WINDOW bug/JAL-797
2018-05-15 gmungocJAL-2719 parse bit score annotation from search results
2018-05-15 gmungocJAL-1264 exclude score-only from 'Add Reference Annotat...
2018-05-15 gmungocJAL-2629 JAL-2937 respect 'align automatically' option...
2018-05-14 gmungocJAL-2989 refactoring to reduce code duplication
2018-05-14 gmungocJAL-2711 show short file names in search database combo box
2018-05-14 gmungocJAL-2989 support value display names for Option or...
2018-05-14 gmungocJAL-2711 removed unused and flaky utility method
2018-05-14 gmungocJAL-2939 check for hmm present when processing groups
2018-05-11 gmungocJAL-2985 show label instead of checkbox for a required...
2018-05-11 gmungocMerge branch 'develop' into features/mchmmer
2018-05-11 gmungocJAL-2986 corrected findIndex for out of range residue...
2018-05-11 gmungocJAL-2986 additional asserts for SequenceCursor updates
2018-05-11 gmungocJAL-2986 failing test added
2018-05-10 gmungocJAL-2629 revert to showing Profile parameter even if...
2018-05-10 gmungocJAL-2629 default HMMBuild to alignment if not specified...
2018-05-10 gmungocJAL-591 reduced updating by checking/setting 'updating...
2018-05-10 gmungocJAL-2629 handle decline 'Add Database'
2018-05-10 gmungocJAL-2629 adjust placement and optionality of arguments...
2018-05-10 gmungocJAL-591 show choice list with a single option
2018-05-10 Jim ProcterJAL-2920 release notes Release_2_10_4
2018-05-10 Jim ProcterMerge branch 'bug/JAL-2920_uniprotvariantfeature' into...
2018-05-10 Jim ProcterJAL-2920 basic test for Description from features with...
2018-05-10 Jim ProcterJAL-2920 simplified logic and added corner cases for...
2018-05-09 Jim ProcterJAL-2906 update release date and release notes
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