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jalview.git
2016-05-31 Jim ProcterMerge branch 'develop' into features/JAL-2113_emblXml1.2 commit | commitdiff | tree | snapshot
2016-05-31 Jim ProcterMerge branch 'jims/291patches' into develop commit | commitdiff | tree | snapshot
2016-05-31 gmungocJAL-1011 JAL-1989 don't mirror column-only selections... commit | commitdiff | tree | snapshot
2016-05-31 gmungocJAL-2123 use "rlabel" command to highlight with label... commit | commitdiff | tree | snapshot
2016-05-30 tcofoegbuJAL-2038 fix to enable case-insensitive file name ... commit | commitdiff | tree | snapshot
2016-05-30 Jim ProcterJAL-553 JAL-1557 always send selections after triggerin... commit | commitdiff | tree | snapshot
2016-05-30 Jim ProcterJAL-1557 allow group associated rows to be used to... commit | commitdiff | tree | snapshot
2016-05-30 Jim ProcterJAL-2077 release notes commit | commitdiff | tree | snapshot
2016-05-30 Jim ProcterJAL-2077 fix: convenience method and checks for CMD... commit | commitdiff | tree | snapshot
2016-05-30 Jim ProcterJAL-1551 formatting commit | commitdiff | tree | snapshot
2016-05-30 Jim ProcterJAL-2089 update release date for 2.9.1 commit | commitdiff | tree | snapshot
2016-05-30 gmungocJAL-1670 JAL-2018 updated unit test for added example... commit | commitdiff | tree | snapshot
2016-05-30 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2016-05-30 gmungocJAL-1989 equals method strengthened to fully match... commit | commitdiff | tree | snapshot
2016-05-30 gmungocJAL-2119 help links checker added to /utils commit | commitdiff | tree | snapshot
2016-05-30 Jim ProcterJAL-1552 fix JAL-2122 resolve File->string before addin... commit | commitdiff | tree | snapshot
2016-05-30 gmungocJAL-2119 updated Valdar group link commit | commitdiff | tree | snapshot
2016-05-29 gmungocJAL-2119 fixes for broken links in help files commit | commitdiff | tree | snapshot
2016-05-27 gmungocJAL-1989 tightened up use of flag for 'column selection... commit | commitdiff | tree | snapshot
2016-05-27 gmungocJAL-1989 added hashCode and equals, renamed field to... commit | commitdiff | tree | snapshot
2016-05-27 gmungocJAL-1911 use existing object when setting 'Prompt each... commit | commitdiff | tree | snapshot
2016-05-27 tcofoegbumerge commit | commitdiff | tree | snapshot
2016-05-27 tcofoegbuJAL-1823 improvement to all chain code specification... commit | commitdiff | tree | snapshot
2016-05-27 tcofoegbuJAL-1911 further improvement to bugfix - do not save... commit | commitdiff | tree | snapshot
2016-05-27 gmungocJAL-1942 small tidy (formatting, explict imports, typed... commit | commitdiff | tree | snapshot
2016-05-27 gmungocJAL-1911 correct typo in field name commit | commitdiff | tree | snapshot
2016-05-26 tcofoegbumerge commit | commitdiff | tree | snapshot
2016-05-26 tcofoegbuJAL-1911 improvement to bugfix - do not save i18n text... commit | commitdiff | tree | snapshot
2016-05-26 Jim ProcterJAL-2030 - add servlet-api-3.1.jar to installAnywhere... commit | commitdiff | tree | snapshot
2016-05-26 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie... commit | commitdiff | tree | snapshot
2016-05-26 tcofoegbumerge commit | commitdiff | tree | snapshot
2016-05-26 tcofoegbuJAL-1911 bugfix - do not save i18n text in preference... commit | commitdiff | tree | snapshot
2016-05-26 Jim ProcterJAL-2121 refactor todo commit | commitdiff | tree | snapshot
2016-05-26 gmungocJAL-391 add reverse / complement to command history... commit | commitdiff | tree | snapshot
2016-05-26 gmungocJAL-2035 relocated a comment commit | commitdiff | tree | snapshot
2016-05-26 Jim ProcterJAL-2089 update developer doc commit | commitdiff | tree | snapshot
2016-05-26 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie... commit | commitdiff | tree | snapshot
2016-05-26 Jim ProcterJAL-1400 JAL-2089 allow configurable signature algorithms commit | commitdiff | tree | snapshot
2016-05-26 Jim ProcterJAL-1551 formatting commit | commitdiff | tree | snapshot
2016-05-26 Jim ProcterJAL-1552 refactor shared dataflavor hander commit | commitdiff | tree | snapshot
2016-05-26 gmungocJAL-1670 add non-positional feature with link to demons... commit | commitdiff | tree | snapshot
2016-05-26 gmungocJAL-1993 open sequence fetcher tree on 'fetch sequences' commit | commitdiff | tree | snapshot
2016-05-26 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2016-05-26 tcofoegbumerge commit | commitdiff | tree | snapshot
2016-05-26 tcofoegbuJAL-1919 JAL-1479 user help docs commit | commitdiff | tree | snapshot
2016-05-26 Jim ProcterJAL-1552 extra debug logging for dataflavor if drop... commit | commitdiff | tree | snapshot
2016-05-26 tcofoegbumerge commit | commitdiff | tree | snapshot
2016-05-26 tcofoegbuJAL-1911 bugfix - do not save i18n text in preference... commit | commitdiff | tree | snapshot
2016-05-26 gmungocJAL-1797 non-case-sensitive counting of residues /... commit | commitdiff | tree | snapshot
2016-05-26 gmungocJAL-2008 drag to reorder features not available in... commit | commitdiff | tree | snapshot
2016-05-26 gmungocJAL-2079 update examples to new pfam.xfam.org domain commit | commitdiff | tree | snapshot
2016-05-26 gmungocJAL-2113 additions to embl_mapping.xml / data models... features/JAL-2113_emblXml1.2 commit | commitdiff | tree | snapshot
2016-05-25 Jim ProcterJAL-1522 patch - try to pick best text dataflavor commit | commitdiff | tree | snapshot
2016-05-23 gmungocJAL-2113 remove spaces in sequence from unmarshalling... commit | commitdiff | tree | snapshot
2016-05-23 gmungocJAL-2114 save 'raw' ENA location as a sequence feature... commit | commitdiff | tree | snapshot
2016-05-23 gmungocJAL-2113 tidy variable naming / javadoc commit | commitdiff | tree | snapshot
2016-05-23 gmungocJAL-2113 EBIFetchClient refactor / unit tests / remove... commit | commitdiff | tree | snapshot
2016-05-23 gmungocMerge branch 'develop' into features/JAL-2113_emblXml1.2 commit | commitdiff | tree | snapshot
2016-05-20 gmungocJAL-2114 explicit invalid test cases added commit | commitdiff | tree | snapshot
2016-05-20 gmungocJAL-2113 corrected test to use valid location syntax commit | commitdiff | tree | snapshot
2016-05-20 gmungocJAL-2113 removed classes deleted from mapping commit | commitdiff | tree | snapshot
2016-05-20 gmungocJAL-2113 embl_mapping.xml and code updated for EMBL... commit | commitdiff | tree | snapshot
2016-05-20 gmungocJAL-2114 accept "<123..178" or "123..>178" format commit | commitdiff | tree | snapshot
2016-05-20 gmungocJAL-2115 updated web link for MAFFT (and one typo) commit | commitdiff | tree | snapshot
2016-05-20 gmungocJAL-2049 unit test updated for HGVS syntax, feature... commit | commitdiff | tree | snapshot
2016-05-19 gmungocJAL-2114 added single-locus case and more error tests commit | commitdiff | tree | snapshot
2016-05-19 gmungocJAL-2114 parser + tests for GenBank location descriptors commit | commitdiff | tree | snapshot
2016-05-18 tcofoegbumerge commit | commitdiff | tree | snapshot
2016-05-18 tcofoegbuJAL-1563 User documentation for Uniprot FTS commit | commitdiff | tree | snapshot
2016-05-18 tcofoegbuJAL-1563 smarter support for advanced querying of Unipr... commit | commitdiff | tree | snapshot
2016-05-18 gmungocJAL-2049 set sequence feature group to "Jalview" for... commit | commitdiff | tree | snapshot
2016-05-18 gmungocJAL-2049 use HGVS notation for variant on protein residue commit | commitdiff | tree | snapshot
2016-05-17 tcofoegbuJAL-2106 JAL-1926 updated source doc for set/getSourceDBRef commit | commitdiff | tree | snapshot
2016-05-17 tcofoegbumerge commit | commitdiff | tree | snapshot
2016-05-17 tcofoegbuJAL-1270 Fixed anntatedPDBFileInputTest and updated... commit | commitdiff | tree | snapshot
2016-05-13 gmungocJAL-2105 capture Ensembl data version, check REST versi... commit | commitdiff | tree | snapshot
2016-05-12 gmungocJAL-2104 format tooltips to wrap correctly commit | commitdiff | tree | snapshot
2016-05-11 tcofoegbuJAL-1563 updated uniprot FTS config file commit | commitdiff | tree | snapshot
2016-05-09 tcofoegbumerge commit | commitdiff | tree | snapshot
2016-05-09 tcofoegbuJAL-2101 JAL-2071 JAL-1563 Added fix to enable searchin... commit | commitdiff | tree | snapshot
2016-05-09 tcofoegbuJAL-2102 implemented improvement to round FTS's numberi... commit | commitdiff | tree | snapshot
2016-05-09 gmungocJAL-2098 identify feature file with "<" in feature... commit | commitdiff | tree | snapshot
2016-05-09 gmungocJAL-2018 export graduated feature colours correctly commit | commitdiff | tree | snapshot
2016-05-06 Jim ProcterMerge branch 'features/JAL-192_scalerelativetoseq'... commit | commitdiff | tree | snapshot
2016-05-06 Jim ProcterJAL-192 fix javadoc commit | commitdiff | tree | snapshot
2016-05-06 Jim ProcterJAL-192 JAL-2099 unused variables commit | commitdiff | tree | snapshot
2016-05-06 Jim ProcterJAL-1551 formatting commit | commitdiff | tree | snapshot
2016-05-06 Jim ProcterJAL-192 JAL-2099 reuse refactored scale code for wrappe... commit | commitdiff | tree | snapshot
2016-05-06 Jim ProcterJAL-192 JAL-2099 factored out calculation from renderin... commit | commitdiff | tree | snapshot
2016-05-06 Jim ProcterJAL-192 JAL-2099 factored out calculation from renderin... commit | commitdiff | tree | snapshot
2016-05-06 Jim ProcterJAL-192 JAL-2099 factored out calculation from renderin... commit | commitdiff | tree | snapshot
2016-05-06 Jim ProcterJAL-2100 centre triangles on hidden column vertical... commit | commitdiff | tree | snapshot
2016-05-06 Jim ProcterJAL-2100 optimisation commit | commitdiff | tree | snapshot
2016-05-06 Jim ProcterJAL-2100 triangles shown below in jvdesktop unwrapped... commit | commitdiff | tree | snapshot
2016-05-06 Jim ProcterJAL-192 patch off-by-one for pathological gap case commit | commitdiff | tree | snapshot
2016-05-05 gmungocJAL-2068 better documentation in example script commit | commitdiff | tree | snapshot
2016-05-05 Jim ProcterJAL-192 patch for off-by one and pathological case... commit | commitdiff | tree | snapshot
2016-05-04 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2016-05-04 gmungocJAL-2074 reinstated xerces-impl.jar commit | commitdiff | tree | snapshot
2016-05-04 Jim ProcterRevert "JAL-2074 removed xerces to explore wierdness" commit | commitdiff | tree | snapshot
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