git://source.jalview.org / jalview.git / shortlog
? search:
summary | shortlog | log | commit | commitdiff | tree
first ⋅ prev ⋅ next
jalview.git
2016-08-19 tcofoegbuMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2016-08-19 tcofoegbuJAL-1803 unit test for PDB chainCode save/restore from... commit | commitdiff | tree | snapshot
2016-08-18 gmungocJAL-2077 using Platform method to check for Ctrl-down commit | commitdiff | tree | snapshot
2016-08-18 gmungocJAL-1445 status message '...not containing...' for... commit | commitdiff | tree | snapshot
2016-08-18 gmungocJAL-1693 show warning dialog if unable to make CDS... commit | commitdiff | tree | snapshot
2016-08-18 gmungocJAL-1855 fail gracefully if XML has no <sequence> element commit | commitdiff | tree | snapshot
2016-08-18 gmungocJAL-2077 handling Cmd-click in scale panel for Mac... commit | commitdiff | tree | snapshot
2016-08-18 gmungocJAL-2001 return copy of selection in getSelected() commit | commitdiff | tree | snapshot
2016-08-17 gmungocJAL-2146 status message now with formatted residue... commit | commitdiff | tree | snapshot
2016-08-17 gmungocJAL-2173 don't remove annotation from hidden columns commit | commitdiff | tree | snapshot
2016-08-17 gmungocJAL-2172 reverted to not sorting column selection commit | commitdiff | tree | snapshot
2016-08-17 gmungocJAL-2105 rest versions updated to 4.6, change log link... commit | commitdiff | tree | snapshot
2016-08-17 gmungocJAL-2172 handle case where column selection is not... commit | commitdiff | tree | snapshot
2016-08-16 gmungocJAL-2172 unit test added commit | commitdiff | tree | snapshot
2016-08-15 tcofoegbuJAL-1128 fix for truncated bottom boarder pixels in... commit | commitdiff | tree | snapshot
2016-08-15 tcofoegbuJAL-1128 fix for truncated bottom boarder pixels in... commit | commitdiff | tree | snapshot
2016-08-15 tcofoegbuMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2016-08-15 tcofoegbuJAL-1919 Added improvement to ensure consistence of... commit | commitdiff | tree | snapshot
2016-08-10 gmungocJAL-2124 i18n of 'All' menu item commit | commitdiff | tree | snapshot
2016-08-10 gmungocJAL-2124 i18n of "All" menu item commit | commitdiff | tree | snapshot
2016-08-10 gmungocJAL-2146 small optimisation (avoid String creation) commit | commitdiff | tree | snapshot
2016-08-10 gmungocJAL-2146 show Column no [Sequence no [Residue / pos... commit | commitdiff | tree | snapshot
2016-08-08 gmungocJAL-1577 rebuild menus when secondary structure manuall... commit | commitdiff | tree | snapshot
2016-08-08 tcofoegbureplaced broken biojsmsa home link in jalveiw help commit | commitdiff | tree | snapshot
2016-08-08 gmungocJAL-2119 replaced link with a non-404 alternative commit | commitdiff | tree | snapshot
2016-08-08 gmungocJAL-2168 -nonews option also mentioned here commit | commitdiff | tree | snapshot
2016-08-08 gmungocJAL-2119 updates to invalid / obsolete help links commit | commitdiff | tree | snapshot
2016-08-08 gmungocJAL-2168 document '-nonews' parameter commit | commitdiff | tree | snapshot
2016-08-05 gmungocJAL-2168 skip news feed if parameter "-nonews" is supplied commit | commitdiff | tree | snapshot
2016-08-05 gmungocJAL-1448 always use UK locale for formatted date properties commit | commitdiff | tree | snapshot
2016-08-05 gmungocJAL-2164 add transferred annotation to sequence commit | commitdiff | tree | snapshot
2016-08-04 gmungocJAL-2164 changed to be Java 1.7 compliant commit | commitdiff | tree | snapshot
2016-08-04 gmungocJAL-2008 handle fast mouse drag of feature ordering... commit | commitdiff | tree | snapshot
2016-08-04 gmungocJAL-2015 convert Color from colour picker to FeatureColour commit | commitdiff | tree | snapshot
2016-08-02 Jim ProcterJAL-2046 additional logic to suppress spurious implemen... commit | commitdiff | tree | snapshot
2016-08-02 Jim ProcterMerge branch 'efficiency/JAL-2034_JAL-1421' into develop commit | commitdiff | tree | snapshot
2016-08-02 Jim ProcterJAL-2034 show greyed out image during overview update commit | commitdiff | tree | snapshot
2016-08-02 Jim ProcterMerge branch 'develop' into efficiency/JAL-2034_JAL... commit | commitdiff | tree | snapshot
2016-08-02 Jim ProcterJAL-2068 reinstated false return value for notifyWorking commit | commitdiff | tree | snapshot
2016-08-02 Jim ProcterMerge branch 'develop' into efficiency/JAL-2034_JAL... commit | commitdiff | tree | snapshot
2016-08-01 Jim ProcterJAL-2164 TODO: make test pass for JMOL_PARSER commit | commitdiff | tree | snapshot
2016-08-01 Jim ProcterJAL-2164 JAL-1919 JAL-1270 use structure import setting... commit | commitdiff | tree | snapshot
2016-08-01 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie... commit | commitdiff | tree | snapshot
2016-08-01 tcofoegbuJAL-2164 bugfix to convert insCodes of '\000' to '... commit | commitdiff | tree | snapshot
2016-08-01 Jim ProcterMerge branch 'bug/JAL-2154projectMappings' into develop commit | commitdiff | tree | snapshot
2016-08-01 Jim ProcterMerge branch 'task/JAL-2164_mcviewforoldjalviewprojects... commit | commitdiff | tree | snapshot
2016-08-01 Jim ProcterJAL-2164 prevent jalview news from opening task/JAL-2164_mcviewforoldjalviewprojects commit | commitdiff | tree | snapshot
2016-08-01 Jim ProcterJAL-2164 clear the desktop before testStoreAndRecoverEx... commit | commitdiff | tree | snapshot
2016-08-01 Jim ProcterMerge branch 'task/JAL-2164_mcviewforoldjalviewprojects... commit | commitdiff | tree | snapshot
2016-08-01 Jim ProcterJAL-1772 make sure we actually return reference to... commit | commitdiff | tree | snapshot
2016-07-29 Jim ProcterJAL-1772 JAL-2164 make expanded view save/restore test... commit | commitdiff | tree | snapshot
2016-07-29 Jim ProcterJAL-2164 JAL-1772 explodeViews can be static, so make... commit | commitdiff | tree | snapshot
2016-07-29 tcofoegbuJAL-1957 JAL-1479 updated SIFTS user docs commit | commitdiff | tree | snapshot
2016-07-29 Jim ProcterJAL-2164 revert tests depending on import of legacy... commit | commitdiff | tree | snapshot
2016-07-29 Jim ProcterJAL-2154 disable visual delay only after completed... commit | commitdiff | tree | snapshot
2016-07-29 Jim ProcterJAL-2154 register any new dataset codon frames only... commit | commitdiff | tree | snapshot
2016-07-29 Jim ProcterJAL-2154 only include mappings in dbref/alcodon in... commit | commitdiff | tree | snapshot
2016-07-29 tcofoegbuJAL-2157 fixed Jalview2xmlTest commit | commitdiff | tree | snapshot
2016-07-27 Jim ProcterJAL-2154 toString for forward references commit | commitdiff | tree | snapshot
2016-07-27 Jim ProcterMerge branch 'patch/JAL-2156_JAL-2163_saveSplitFrameFro... commit | commitdiff | tree | snapshot
2016-07-27 Jim ProcterJAL-2163 set title for the alignframe from restored... patch/JAL-2156_JAL-2163_saveSplitFrameFromSaveAs_restoreTitles commit | commitdiff | tree | snapshot
2016-07-27 Jim ProcterJAL-2156 resolve and add complementary views for saveAl... commit | commitdiff | tree | snapshot
2016-07-27 Jim ProcterJAL-2156 refactor saveState & saveAlignment to common... commit | commitdiff | tree | snapshot
2016-07-27 Jim ProcterJAL-2156 getter for AlignFrame(s) held in a splitframe commit | commitdiff | tree | snapshot
2016-07-27 tcofoegbuMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2016-07-27 tcofoegbuJAL-1919 added codes for End-2-End scan for sequence... commit | commitdiff | tree | snapshot
2016-07-26 Jim ProcterJAL-2157 todo: verify parser/file format enums and... commit | commitdiff | tree | snapshot
2016-07-26 tcofoegbuJAL-2157 bugfix for issues from enum refactoring commit | commitdiff | tree | snapshot
2016-07-25 tcofoegbuJAL-2157 bugfix for regression from commit 82a6c8e2e25b... commit | commitdiff | tree | snapshot
2016-07-24 Jim ProcterJAL-2154 formatting commit | commitdiff | tree | snapshot
2016-07-24 Jim ProcterJAL-2154 keep track of incomplete sequences and report... commit | commitdiff | tree | snapshot
2016-07-24 Jim ProcterJAL-2154 systematic pattern for defining/resolving... commit | commitdiff | tree | snapshot
2016-07-23 Jim ProcterJAL-2154 patch the hack (Jalview2XML tests pass) commit | commitdiff | tree | snapshot
2016-07-22 tcofoegbuJAL-2148 Bugfix in structureImportSettings string-to... commit | commitdiff | tree | snapshot
2016-07-21 tcofoegbuResolve merge conflict for StructureImportSettings commit | commitdiff | tree | snapshot
2016-07-21 tcofoegbuJAL-2148 fix to heuristically determine chain terminati... commit | commitdiff | tree | snapshot
2016-07-21 Jim ProcterMerge branch 'apifix/JAL-1926_JAL-2106' into develop commit | commitdiff | tree | snapshot
2016-07-20 gmungocJAL-2154 poke JSeq start/end into Vamsas sequence commit | commitdiff | tree | snapshot
2016-07-20 Jim ProcterJAL-1926 JAL-2106 fix name for flag controlling additio... commit | commitdiff | tree | snapshot
2016-07-20 Jim ProcterJAL-1926 JAL-2106 don’t use PDB database constant as... commit | commitdiff | tree | snapshot
2016-07-20 Jim ProcterJAL-1926 JAL-2106 use enum for ‘DEFAULT_STRUCTURE_FORMA... commit | commitdiff | tree | snapshot
2016-07-20 Jim ProcterJAL-1926 JAL-2106 remove startRes/endRes fields - not... commit | commitdiff | tree | snapshot
2016-07-20 gmungocJAL-2023 stronger check for whether to start cdna consensus commit | commitdiff | tree | snapshot
2016-07-20 gmungocJAL-2023 avoid writing / loading empty mappings commit | commitdiff | tree | snapshot
2016-07-20 gmungocJAL-2023 JAL-1681 fixed bug in computing '+' for co... commit | commitdiff | tree | snapshot
2016-07-20 gmungocJAL-2068 AnnotationWorker create/update annotation... commit | commitdiff | tree | snapshot
2016-07-19 gmungocJAL-2068 small refactor to reuse shared method commit | commitdiff | tree | snapshot
2016-07-19 gmungocJAL-2068 update rather than recreate AlignmentAnnotatio... commit | commitdiff | tree | snapshot
2016-07-19 gmungocJAL-391 corrected handling of gapped sequences commit | commitdiff | tree | snapshot
2016-07-19 tcofoegbuMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2016-07-19 tcofoegbuJAL-1919 set default structure file format to mmCIF... commit | commitdiff | tree | snapshot
2016-07-19 Jim ProcterMerge branch 'develop' into efficiency/JAL-2034_JAL... commit | commitdiff | tree | snapshot
2016-07-18 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie... commit | commitdiff | tree | snapshot
2016-07-18 Jim ProcterJAL-666 patch JAL-1947 in applet where overview is... commit | commitdiff | tree | snapshot
2016-07-18 gmungocJAL-2105 check content of Ensembl REST ping response commit | commitdiff | tree | snapshot
2016-07-18 gmungocJAL-2099 ensure initial setting of scaleAbove reaches... commit | commitdiff | tree | snapshot
2016-07-18 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2016-07-18 gmungocJAL-2099 JAL-2100 port scale number / hidden column... commit | commitdiff | tree | snapshot
2016-07-18 Jim ProcterJAL-2068 clearer instructions on how to use script... commit | commitdiff | tree | snapshot
2016-07-18 Jim ProcterJAL-2068 clarify comments commit | commitdiff | tree | snapshot
next