source.jalview.org Git - jalview.git/shortlog

git://source.jalview.org / jalview.git / shortlog

2007-05-01	amwaterhouse	use jalviewLite to addFrame	commit \| commitdiff \| tree \| snapshot
2007-05-01	amwaterhouse	remove system.out	commit \| commitdiff \| tree \| snapshot
2007-05-01	amwaterhouse	set chains available	commit \| commitdiff \| tree \| snapshot
2007-05-01	amwaterhouse	Multiple views/hidden region/undo out of index bug	commit \| commitdiff \| tree \| snapshot
2007-05-01	amwaterhouse	Can specify PDB chain to map sequence to - only used...	commit \| commitdiff \| tree \| snapshot
2007-05-01	jprocter	javadoc	commit \| commitdiff \| tree \| snapshot
2007-05-01	jprocter	removeAlignmentAnnotation only removes annotation objec...	commit \| commitdiff \| tree \| snapshot
2007-05-01	jprocter	sort-by-score works of sequence-annotation, not alignme...	commit \| commitdiff \| tree \| snapshot
2007-05-01	amwaterhouse	Save seqset properties	commit \| commitdiff \| tree \| snapshot
2007-05-01	amwaterhouse	Seqset properties saved	commit \| commitdiff \| tree \| snapshot
2007-05-01	jprocter	2.3 what's new	commit \| commitdiff \| tree \| snapshot
2007-05-01	jprocter	preliminary EMBL and mapping documentation	commit \| commitdiff \| tree \| snapshot
2007-04-30	jprocter	'no sources selected' calls method on feature settings...	commit \| commitdiff \| tree \| snapshot
2007-04-30	jprocter	fixed deadlock	commit \| commitdiff \| tree \| snapshot
2007-04-30	amwaterhouse	setVisible replaces show	commit \| commitdiff \| tree \| snapshot
2007-04-30	amwaterhouse	Version 11.0.2	commit \| commitdiff \| tree \| snapshot
2007-04-30	amwaterhouse	REmoved	commit \| commitdiff \| tree \| snapshot
2007-04-30	jprocter	rebuild sort by scores menu when new annotation is...	commit \| commitdiff \| tree \| snapshot
2007-04-30	jprocter	pad should leave null annotations array null	commit \| commitdiff \| tree \| snapshot
2007-04-30	jprocter	convenient creation of 'score only' annotation.	commit \| commitdiff \| tree \| snapshot
2007-04-30	jprocter	parse alignment properties and add annotation rows...	commit \| commitdiff \| tree \| snapshot
2007-04-30	jprocter	alignment properties and embedded newick strings can...	commit \| commitdiff \| tree \| snapshot
2007-04-30	jprocter	dssp 7-state to three state lookup	commit \| commitdiff \| tree \| snapshot
2007-04-30	jprocter	javadoc	commit \| commitdiff \| tree \| snapshot
2007-04-27	amwaterhouse	remove excessive painting	commit \| commitdiff \| tree \| snapshot
2007-04-27	amwaterhouse	REmove excessive painting	commit \| commitdiff \| tree \| snapshot
2007-04-27	amwaterhouse	Repaint after feature added	commit \| commitdiff \| tree \| snapshot
2007-04-27	amwaterhouse	Prevent err when editing and overview drawing	commit \| commitdiff \| tree \| snapshot
2007-04-27	amwaterhouse	FeatureRenderer mixups fixed	commit \| commitdiff \| tree \| snapshot
2007-04-27	amwaterhouse	Remove system.out AppletPDBViewer.java	commit \| commitdiff \| tree \| snapshot
2007-04-27	amwaterhouse	Check pdbid size >0	commit \| commitdiff \| tree \| snapshot
2007-04-27	amwaterhouse	Trouble with featureRenderers fixed	commit \| commitdiff \| tree \| snapshot
2007-04-27	amwaterhouse	Move repaint in thread	commit \| commitdiff \| tree \| snapshot
2007-04-27	amwaterhouse	Put alignmentProperties in scrollpane	commit \| commitdiff \| tree \| snapshot
2007-04-27	amwaterhouse	Check feature group is visible for mouse over features	commit \| commitdiff \| tree \| snapshot
2007-04-27	amwaterhouse	remove System.out	commit \| commitdiff \| tree \| snapshot
2007-04-27	amwaterhouse	Add param to Jmol path	commit \| commitdiff \| tree \| snapshot
2007-04-27	amwaterhouse	padGaps moved	commit \| commitdiff \| tree \| snapshot
2007-04-27	amwaterhouse	Make sure mainContainer and owner are not null	commit \| commitdiff \| tree \| snapshot
2007-04-27	amwaterhouse	Must check that featureGroup is visible for mouse over...	commit \| commitdiff \| tree \| snapshot
2007-04-27	amwaterhouse	amendFeatures	commit \| commitdiff \| tree \| snapshot
2007-04-27	amwaterhouse	paintAlignment(true)	commit \| commitdiff \| tree \| snapshot
2007-04-27	amwaterhouse	Place new feature on top of existing features	commit \| commitdiff \| tree \| snapshot
2007-04-27	amwaterhouse	Make sure sequence is in mouse over alignment	commit \| commitdiff \| tree \| snapshot
2007-04-27	amwaterhouse	Amend Features	commit \| commitdiff \| tree \| snapshot
2007-04-27	amwaterhouse	ColourByStructure not ready yet	commit \| commitdiff \| tree \| snapshot
2007-04-27	jprocter	newlines in alignment properties converted to <br>	commit \| commitdiff \| tree \| snapshot
2007-04-27	jprocter	blc header lines inserted as 'comment' alignment property	commit \| commitdiff \| tree \| snapshot
2007-04-27	jprocter	parsers can generate alignment properties	commit \| commitdiff \| tree \| snapshot
2007-04-27	jprocter	getProperties returns nullk for no properties	commit \| commitdiff \| tree \| snapshot
2007-04-27	jprocter	documentation and getProperties method	commit \| commitdiff \| tree \| snapshot
2007-04-27	amwaterhouse	aligned boxes	commit \| commitdiff \| tree \| snapshot
2007-04-27	amwaterhouse	ThresholdIsMin available in applet	commit \| commitdiff \| tree \| snapshot
2007-04-27	amwaterhouse	Set black if colour null	commit \| commitdiff \| tree \| snapshot
2007-04-27	amwaterhouse	Alignment properties available	commit \| commitdiff \| tree \| snapshot
2007-04-27	amwaterhouse	hide the initial window after selection made	commit \| commitdiff \| tree \| snapshot
2007-04-27	amwaterhouse	one colour flag in annotation export	commit \| commitdiff \| tree \| snapshot
2007-04-27	jprocter	bugfix for deleted annotation undo	commit \| commitdiff \| tree \| snapshot
2007-04-27	amwaterhouse	Annotation gradient will use direct colours if no graph...	commit \| commitdiff \| tree \| snapshot
2007-04-27	amwaterhouse	Allow threshold to be min/max	commit \| commitdiff \| tree \| snapshot
2007-04-27	amwaterhouse	hide annotation colouring options	commit \| commitdiff \| tree \| snapshot
2007-04-27	amwaterhouse	Dont colour labels	commit \| commitdiff \| tree \| snapshot
2007-04-26	jprocter	added/tested sort by scores menu and added basic extrac...	commit \| commitdiff \| tree \| snapshot
2007-04-26	jprocter	use hasScore method to test presence of score in annota...	commit \| commitdiff \| tree \| snapshot
2007-04-26	jprocter	added 'sort by sequence associated annotation score'	commit \| commitdiff \| tree \| snapshot
2007-04-26	jprocter	bug fixed basic score extraction by regex on descriptio...	commit \| commitdiff \| tree \| snapshot
2007-04-26	jprocter	get annotation by label string	commit \| commitdiff \| tree \| snapshot
2007-04-26	jprocter	fix '\0' bug from score-only positional annotation	commit \| commitdiff \| tree \| snapshot
2007-04-26	jprocter	score is a double, fix bugs for score only annotation...	commit \| commitdiff \| tree \| snapshot
2007-04-26	jprocter	double sort functions	commit \| commitdiff \| tree \| snapshot
2007-04-26	jprocter	total annotation score is a double for maximum precision.	commit \| commitdiff \| tree \| snapshot
2007-04-26	amwaterhouse	check for null ss character	commit \| commitdiff \| tree \| snapshot
2007-04-26	amwaterhouse	colourText = false	commit \| commitdiff \| tree \| snapshot
2007-04-26	jprocter	score and visible copy construction	commit \| commitdiff \| tree \| snapshot
2007-04-26	amwaterhouse	Edit seqs	commit \| commitdiff \| tree \| snapshot
2007-04-26	jprocter	quick fix for verbose fortranesque comments in preamble...	commit \| commitdiff \| tree \| snapshot
2007-04-26	jprocter	fixed bug in prefix extraction for application	commit \| commitdiff \| tree \| snapshot
2007-04-26	jprocter	basic methods for adding scores extracted from description	commit \| commitdiff \| tree \| snapshot
2007-04-26	jprocter	fix for null annotations	commit \| commitdiff \| tree \| snapshot
2007-04-26	jprocter	groovy support without compile-time dependency.	commit \| commitdiff \| tree \| snapshot
2007-04-26	amwaterhouse	remove should be removeElement	commit \| commitdiff \| tree \| snapshot
2007-04-26	amwaterhouse	Alignment Properties required for annotation file	commit \| commitdiff \| tree \| snapshot
2007-04-25	jprocter	moving word methods to MapList and begin bug-fix for...	commit \| commitdiff \| tree \| snapshot
2007-04-25	jprocter	getContentPane().add alignmentProperties popup.	commit \| commitdiff \| tree \| snapshot
2007-04-25	amwaterhouse	properties + colours	commit \| commitdiff \| tree \| snapshot
2007-04-25	amwaterhouse	Show scores	commit \| commitdiff \| tree \| snapshot
2007-04-25	amwaterhouse	Export annotations with properties	commit \| commitdiff \| tree \| snapshot
2007-04-25	amwaterhouse	View Properties	commit \| commitdiff \| tree \| snapshot
2007-04-25	amwaterhouse	fix recent file type bug	commit \| commitdiff \| tree \| snapshot
2007-04-25	amwaterhouse	alignmentProperties added	commit \| commitdiff \| tree \| snapshot
2007-04-25	jprocter	Functions for parsing free text properties on sequences...	commit \| commitdiff \| tree \| snapshot
2007-04-25	jprocter	transfer of residue numbering as alignment annotation	commit \| commitdiff \| tree \| snapshot
2007-04-25	jprocter	AlignmentAnnotation: added annotation score attribute...	commit \| commitdiff \| tree \| snapshot
2007-04-24	jprocter	bugfix for sequence features mapped to multiple contigs...	commit \| commitdiff \| tree \| snapshot
2007-04-24	jprocter	updated mapping for EMBL_Services_V1.1.xsd and tested...	commit \| commitdiff \| tree \| snapshot
2007-04-23	jprocter	functions that operate on references to sequences in...	commit \| commitdiff \| tree \| snapshot
2007-04-23	jprocter	distinct methods for getting references to selected...	commit \| commitdiff \| tree \| snapshot
2007-04-23	amwaterhouse	getColour method added	commit \| commitdiff \| tree \| snapshot
2007-04-23	amwaterhouse	Check for null displayCharacters	commit \| commitdiff \| tree \| snapshot
2007-04-23	amwaterhouse	Dbref fetcher takes sequences, not alignment	commit \| commitdiff \| tree \| snapshot
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