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jalview.git
2015-06-05
Jim Procter
JAL-653 allow dummy sequences to be created if a sequen...
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2015-06-05
Jim Procter
JAL-1551 formatting
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2015-06-05
Jim Procter
JAL-653 convenience method to resolve strand attribute...
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2015-06-05
Jim Procter
JAL-1115 JAL-653 partial introduction of List interface...
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2015-06-05
Jim Procter
JAL-653 JAL-966 TODO and avoid NPE when desktop instanc...
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2015-06-05
Jim Procter
JAL-653 codon frames go on the dataset
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2015-06-05
Jim Procter
JAL-653 refactored exonerate full output to separate...
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2015-06-05
Jim Procter
JAL-653 JAL-845 test to check exonerate cDNA-Protein...
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2015-06-05
Jim Procter
JAL-1482 JAL-653 refactor feature file import code...
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2015-06-05
Jim Procter
JAL-1482 refactor setTableData to more sensible name...
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2015-06-05
Jim Procter
JAL-1551 formatting
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2015-06-04
gmungoc
JAL-1622 code tidy (+Junit) of collateForPdb()
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2015-06-04
gmungoc
JAL-1747 close all windows on Quit (+small bug fix)
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2015-06-04
gmungoc
toString method added to aid viewing in the debugger
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2015-06-04
gmungoc
JAL-1270 testToString added
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2015-06-04
gmungoc
JAL-1750 View Mapping scoped to that viewer's mappings...
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2015-06-04
gmungoc
JAL-1743 new Chimera menu option to 'fit to window'
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2015-06-04
gmungoc
JAL-1743 View Chain sub-menu now being populated
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2015-06-04
gmungoc
JAL-1753 statusPanel added (for ProgressBar); 'Fit...
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2015-06-04
gmungoc
JAL-1753 ChimeraViewFrame hosts its own ProgressBar
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2015-06-04
gmungoc
JAL-1742 don't offer to align another chain to the...
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2015-06-04
gmungoc
Merge branch 'develop' of https://source.jalview.org...
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2015-06-04
gmungoc
JAL-1757 match only first altloc CA in PDB structure...
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2015-06-04
tcofoegbu
JAL-1641 added some JSON libraries to appletlib
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2015-06-04
tcofoegbu
clean up
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2015-06-04
tcofoegbu
JAL-1756 fix failed test as a result of runing the...
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2015-06-04
gmungoc
JAL-1421 generic collections in MCView package (+unit...
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2015-06-04
tcofoegbu
Merge branch 'features/JAL-1641_JSON-extension' into...
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2015-06-04
tcofoegbu
JAL-1756 bug-fix
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2015-06-04
tcofoegbu
JAL-1641 updated json schema to make it more generic...
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2015-06-02
tcofoegbu
fixed bug in build.xml
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2015-06-02
tcofoegbu
Merge branch 'features/JAL-1641_JSON-extension' into...
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2015-06-02
tcofoegbu
JAL-1641 updated build.xml
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2015-06-02
tcofoegbu
JAL-1641 updated examples/applets.html
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2015-06-02
tcofoegbu
Merge branch 'features/JAL-1641_JSON-extension' into...
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2015-06-02
tcofoegbu
JAL-1641 applet build fix
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2015-06-01
tcofoegbu
Merge branch 'features/JAL-1641_JSON-extension' into...
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2015-06-01
tcofoegbu
JAL-1641 remove all refs/imports from gui package
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2015-06-01
tcofoegbu
Merge branch 'bug/JAL-1703_hint_select_by_annot' into...
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2015-06-01
tcofoegbu
JAL-1703 added tooltip hints to components of the Selec...
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2015-06-01
tcofoegbu
Merge branch 'bug/JAL-1734_misleading-progress-bar...
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2015-06-01
tcofoegbu
JAL-1734 updated progress bar messages
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2015-05-29
tcofoegbu
Merge branch 'develop' of https://source.jalview.org...
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2015-05-29
tcofoegbu
JAL-1748 house keeping
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2015-05-29
gmungoc
Merge branch 'develop' of https://source.jalview.org...
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2015-05-29
gmungoc
JAL-1753 declare field with interface type; check for...
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2015-05-29
Jim Procter
Merge branch 'JAL-1755_npe_groupconsensus' into develop
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2015-05-29
Jim Procter
JAL-1755 fix for NPE when setting up temporary variables
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2015-05-29
gmungoc
JAL-1753 Junit for new class
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2015-05-29
gmungoc
Merge branch 'develop' of https://source.jalview.org...
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2015-05-29
gmungoc
JAL-1753 duplicated code refactored to new class Progre...
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2015-05-29
tcofoegbu
Merge branch 'bug/JAL-1748_extend-pdb-query-opt' into...
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2015-05-29
tcofoegbu
JAL-1748 and employ preprocessing routine when return...
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2015-05-29
tcofoegbu
validate PDB selections on mouse release event
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2015-05-28
tcofoegbu
JAL-1700 made PDB service error mechanism more user...
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2015-05-28
tcofoegbu
Merge branch 'bug/JAL-1751_make-table-uneditable' into...
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2015-05-28
tcofoegbu
JAL-1751 provided method to overide isCellEditable...
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2015-05-28
tcofoegbu
Merge branch 'bug/JAL-1749_reinstate-rna-viewing' into...
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2015-05-28
tcofoegbu
JAL-1749 reinstated the ability to view RNA structures
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2015-05-28
tcofoegbu
JAL-1740 minor house keeping
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2015-05-27
tcofoegbu
Removed redundant classes and dependencies pulled in...
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2015-05-27
tcofoegbu
Merge branch 'features/JAL-1740_Decoup-BioJS' into...
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2015-05-27
tcofoegbu
JAL-1740 updated synch codes to use a git repo rather...
features/JAL-1740_Decoup-BioJS
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2015-05-26
tcofoegbu
JAL-1627 bug fix to remove wierd space in Sequence...
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2015-05-25
tcofoegbu
build fix
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2015-05-22
tcofoegbu
Merge branch 'features/JAL-1745_PDB-redownload' into...
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2015-05-22
tcofoegbu
JAL-1745, JAL-1717 improvement to ensure cached PDB...
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2015-05-22
tcofoegbu
Merge branch 'features/JAL-1745_PDB-redownload' into...
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2015-05-22
tcofoegbu
JAL-1745 improvement to retreive already downloaded...
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2015-05-21
tcofoegbu
JAL-1740 implemented auto-update of BioJsMSA, introduce...
features/JAL-1740_BioJsAutoUpdater
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2015-05-20
gmungoc
Merge branch 'develop' of https://source.jalview.org...
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2015-05-20
gmungoc
JAL-1741 nucleotide-aware colour schemes applied to...
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2015-05-20
tcofoegbu
Merge branch 'features/JAL-1739_JSON-versioning' into...
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2015-05-20
tcofoegbu
JAL-1739 added svid - serial version id to hold version...
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2015-05-20
gmungoc
Merge branch 'develop' of https://source.jalview.org...
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2015-05-20
gmungoc
JAL-796 JAL-1652 better implementation (key binding...
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2015-05-20
tcofoegbu
Merge branch 'features/JAL-1541_BioJsMSA' into develop
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2015-05-20
tcofoegbu
JAL-1541 minor code clean up, and added test for BioJsH...
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2015-05-19
tcofoegbu
Merge branch 'features/JAL-1541_BioJsMSA' into develop
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2015-05-19
tcofoegbu
JAL-1641 Further refactoring of JSON export option...
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2015-05-19
tcofoegbu
JAL-1541 Modified BioJs exporter to take advantage...
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2015-05-18
gmungoc
JAL-1663 detect tab out of RGB value; correct field...
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2015-05-18
gmungoc
JAL-1663 apply new colour correctly; source formatting
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2015-05-18
gmungoc
JAL-1652 Escape key now closes Find dialog
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2015-05-18
gmungoc
JAL-1737 updated JUnit so it creates positional annotations
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2015-05-15
gmungoc
JAL-1270 main method converted to JUnit test
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2015-05-15
gmungoc
JAL-1270 main method converted to JUnit test 'as seen'
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2015-05-15
gmungoc
JAL-1270 main method converted 'as seen' to JUnit
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2015-05-15
gmungoc
JAL-1737 ignore non-positional annotations for display
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2015-05-15
gmungoc
JAL-1270 added test for regex actually used; include...
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2015-05-15
gmungoc
JAL-1270 main methods converted to JUnit
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2015-05-14
gmungoc
JAL-1727 JAL-1270 obsolete DAS registry URL updated...
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2015-05-14
gmungoc
JAL-1270 set Cache properties in setUp to ensure test...
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2015-05-13
gmungoc
JAL-1575 no-cache headers added to (empty) rest response
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2015-05-13
gmungoc
JAL-1712 fixes/tests for Castor binding of EMBL XML...
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2015-05-13
gmungoc
Merge branch 'develop' of https://source.jalview.org...
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2015-05-13
tcofoegbu
Fixed some broken tests
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2015-05-13
gmungoc
Merge branch 'develop' of https://source.jalview.org...
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2015-05-12
tcofoegbu
Merge branch 'features/JAL-793_Embed_data_HTML' into...
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2015-05-12
tcofoegbu
JAL_793 implemented embeding source data in exported...
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