2018-11-20 |
Ben Soares | .gitignore changes |
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2018-11-20 |
Jim Procter | JAL-3127 Sequence ID Colour and nominal spanish translation |
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2018-11-19 |
Jim Procter | JAL-3127 javadoc, don’t darken white when shading resid... |
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2018-11-19 |
Jim Procter | JAL-3156 JAL-3127 code tidy |
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2018-11-19 |
Jim Procter | JAL-3156 javadoc re JAL-3127 and FIXME to make Alignmen... |
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2018-11-19 |
Jim Procter | JAL-3127 drop redundant hidden representative sequences... |
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2018-11-19 |
Jim Procter | JAL-3127 JAL-2773 don’t need to call paintAlignment... |
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2018-11-19 |
Ben Soares | JAL-1988 JAL-3130 New jlinked JRE in jalview_java2... |
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2018-11-19 |
Jim Procter | JAL-3127 tidier tree group colour -> view propagation |
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2018-11-19 |
gmungoc | JAL-3154 disable drag to reorder JTable columns bug/JAL-3154tableColumnDrag |
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2018-11-09 |
Ben Soares | JAL-1988 This fixes the Quit response when user cancels... |
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2018-11-09 |
Jim Procter | JAL-3127 polished setColor after review |
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2018-11-08 |
Ben Soares | JAL-1988 JAL-3130 Now we're in Java 11 land, using... |
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2018-11-08 |
gmungoc | JAL-1889 ignore Clover instrumentation in test (second... |
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2018-11-08 |
gmungoc | JAL-1889 unit test tweaks for running on server |
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2018-11-08 |
Ben Soares | JAL-1988 tidying, plus don't add Preferences to Tools... |
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2018-11-08 |
Ben Soares | JAL-1988 JAVA 11 enabled version with Quit, Preferences... |
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2018-11-05 |
Ben Soares | JAL-1988 Investigating... |
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2018-11-05 |
Ben Soares | JAL-3141 Slightly improved message and more thorough... |
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2018-11-05 |
Ben Soares | JAL-3141 couple of minor fixes for example files being... |
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2018-11-02 |
Ben Soares | JAL-3141 Tests now available and working, bringing... |
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2018-11-01 |
Ben Soares | JAL-3141 Preferences 'Backups' tab now fits. Moved... |
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2018-10-31 |
Ben Soares | JAL-3141 Preferences 'Backups' tab now working. Doesn... |
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2018-10-25 |
gmungoc | JAL-3143 unit tests updated for code changes! |
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2018-10-25 |
Ben Soares | JAL-3141 Ostensibly all backups working for alignment... |
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2018-10-25 |
gmungoc | JAL-3143 comma-delimited feature attributes for alleles, |
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2018-10-25 |
gmungoc | JAL-3143 fetch Ensembl(Genomes) features as JSON not GFF |
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2018-10-24 |
Ben Soares | JAL-3141 Code checkout. Not compiling. |
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2018-10-24 |
Ben Soares | JAL-3141 Code checkout. Not compiling. |
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2018-10-23 |
Ben Soares | BackupFilter and other unfinished business |
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2018-10-23 |
gmungoc | JAL-3139 check group visibility when removing 'redundan... bug/JAL-3139colocatedFeatures |
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2018-10-22 |
Ben Soares | JAL-3141 Taken the backing up code out of FileChooser... |
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2018-10-22 |
Ben Soares | JAL-3141 Taken the backing up code out of FileChooser... |
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2018-10-22 |
Ben Soares | JAL-3141 Tidying |
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2018-10-19 |
Ben Soares | JAL-3141 Backup files being created with default suffix... |
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2018-10-16 |
Jim Procter | JAL-3127 always look up sequence ID colour from view... |
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2018-10-16 |
Jim Procter | JAL-3127 tidy up terminology in colour schemes help... |
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2018-10-16 |
Jim Procter | JAL-3127 updated colours menu and tree view documentation |
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2018-10-16 |
Jim Procter | JAL-3127 reinstate ability to set sequence ID colour... |
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2018-10-16 |
Jim Procter | JAL-3127 use AlignViewportI.addGroup to create & propag... |
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2018-10-16 |
Jim Procter | JAL-3127 use AlignViewportI.addGroup() to add group... |
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2018-10-16 |
Jim Procter | viewport flag to indicate when structure view needs... |
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2018-10-09 |
Jim Procter | JAL-3127 Colour sequences by ID - need to check that... |
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2018-10-09 |
Jim Procter | JAL-3127 TODO - resolve reference to Viewport for group... |
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2018-10-09 |
Jim Procter | JAL-3127 pass reference to AlignViewportI when creating... |
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2018-10-08 |
gmungoc | JAL-1244 comments, javadoc, method signature tweaks feature/JAL-1244stretchStatusMsg |
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2018-10-08 |
gmungoc | JAL-1244 editSequence extract method refactoring |
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2018-10-05 |
gmungoc | JAL-1244 improved status message for insert/delete gap |
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2018-10-04 |
gmungoc | JAL-3132 status message for sequence and/or graph group... |
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2018-10-04 |
gmungoc | JAL-1244 no status message (yet) for locked edit of... |
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2018-10-04 |
gmungoc | JAL-1244 status message for insert/delete gaps on singl... |
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2018-10-04 |
gmungoc | JAL-1244 status message while dragging a stretch group |
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2018-10-04 |
gmungoc | JAL-3132 set status message when over sequence id or... |
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2018-10-04 |
gmungoc | JAL-3093 unit tests, no mouse action over left/right... |
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2018-10-03 |
gmungoc | JAL-3093 tweaks to code and test for 3px gap above... |
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2018-10-02 |
gmungoc | JAL-3093 unit tests for SeqPanel.findMousePosition |
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2018-10-02 |
gmungoc | JAL-3093 limited Consensus popup menu when in wrapped... |
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2018-10-02 |
gmungoc | JAL-3093 added MousePos.isOverAnnotation() for extra... |
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2018-10-01 |
gmungoc | JAL-3093 'read-only' annotations when in wrapped mode |
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2018-10-01 |
gmungoc | JAL-3093 refactor (+test) Annotation Labels tooltip... |
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2018-10-01 |
gmungoc | JAL-3093 unit tests for finding annotation row index... |
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2018-10-01 |
gmungoc | JAL-3093 show annotation tooltips and status message... |
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2018-09-28 |
gmungoc | JAL-3063 service param files read/saved using JAXB... |
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2018-09-28 |
gmungoc | JAL-3063 top level element added to JalviewWsParamSet.xsd |
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2018-09-28 |
gmungoc | JAL-3063 comments re use of xjc to generate Java bindin... |
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2018-09-27 |
gmungoc | JAL-2791 refactored Export Features to apply all visibi... |
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2018-09-27 |
gmungoc | JAL-2791 new method to test if feature fails colour... |
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2018-09-27 |
gmungoc | JAL-2791 method that tests all conditions for feature... |
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2018-09-26 |
gmungoc | JAL-3125 tidy up |
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2018-09-26 |
gmungoc | JAL-3125 avoid slider 'rounding' threshold field value |
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2018-09-24 |
gmungoc | JAL-3063 tidy commented out code |
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2018-09-21 |
gmungoc | JAL-3063 wrappers with check for null getting optional... |
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2018-09-21 |
gmungoc | JAL-3120 preserve feature colour/mincolour/maxcolour... bug/JAL-3120restoreFeatureColour |
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2018-09-20 |
gmungoc | JAL-2843 tweaks to help text for filters |
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2018-09-20 |
gmungoc | JAL-2843 help text for colour by attribute, feature... |
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2018-09-19 |
Jim Procter | Merge branch 'bug/JAL-3120restoreFeatureColour' into... |
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2018-09-19 |
gmungoc | JAL-3120 preserve plain colour value when changing... |
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2018-09-19 |
gmungoc | Merge branch 'develop' of https://source.jalview.org... |
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2018-09-19 |
Jim Procter | Merge branch 'cherrypick/JAL-2808_notabs' into develop |
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2018-09-19 |
Jim Procter | JAL-2808 JAL-3026 deleted all commented out tab code... |
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2018-09-19 |
gmungoc | JAL-2808 JAL-3032 drop tabbed layout for Colours and... |
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2018-09-19 |
gmungoc | JAL-3063 use JAXB for 'Save as Project' and load projec... |
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2018-09-19 |
gmungoc | JAL-3063 unit test for save/load project switched to... |
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2018-09-18 |
gmungoc | JAL-3063 Save/Load user defined colours using JAXB |
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2018-09-18 |
gmungoc | JAL-3063 Save/Load user colour scheme using JAXB |
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2018-09-18 |
gmungoc | JAL-3063 top level element added to colours schema... |
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2018-09-18 |
gmungoc | JAL-3063 New View via JAXB |
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2018-09-18 |
gmungoc | JAL-3063 temporary extra menu option to save/load proje... |
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2018-09-18 |
gmungoc | JAL-3063 first version of Jalview2XML using JAXB to... |
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2018-09-18 |
gmungoc | JAL-3063 JAXB binding classes generated by xjc from... |
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2018-09-18 |
gmungoc | JAL-3063 tweak schema so JAXB tool xjc recognises XML... |
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2018-09-18 |
gmungoc | JAL-3063 tweak schema so JAXB generates enums for enume... |
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2018-09-18 |
Jim Procter | JAL-3035 more dedasification |
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2018-09-18 |
Jim Procter | JAL-2865 release notes |
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2018-09-17 |
gmungoc | JAL-3116 test method renamed to match code |
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2018-09-17 |
gmungoc | JAL-3116 unit tests adapted to EMBL over JAXB |
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2018-09-14 |
gmungoc | JAL-3116 parse EMBL XML with JAXB (todo: update unit... |
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2018-09-13 |
gmungoc | JAL-3116 Uniprot XML unmarshalled using JAXB not Castor |
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2018-09-12 |
gmungoc | Merge branch 'develop' of https://source.jalview.org... |
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2018-09-12 |
Jim Procter | Merge branch 'merge/JAL-3091_JAL-3111_develop_211'... |
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