jalview.git
2022-04-11 Mateusz WarownyJAL-3878 Create SlivkaAnnotationWSClient
2022-04-11 Mateusz WarownyJAL-3878 Add full name getter to ActionI
2022-04-11 Mateusz WarownyJAL-3878 Log status changes in annotation task
2022-04-11 Mateusz WarownyJAL-3878 Allow null value for action name
2022-04-07 Mateusz WarownyJAL-3878 Add action and task for annotation services
2022-04-05 Mateusz WarownyJAL-3878 Introduce IProgressIndicator#addProgressBar
2022-04-05 Mateusz WarownyJAL-3878 Fix method name to fireTaskRestarted
2022-04-05 Mateusz WarownyJAL-3878 Add char[] constructor to Sequence
2022-04-05 Mateusz WarownyJAL-3878 Make BaseJob setters public so they can be...
2022-04-05 Mateusz WarownyJAL-3878 Add fullName to BaseAction class which combine...
2022-04-05 Mateusz WarownyJAL-3878 Move status precedence list to JobStatus class
2022-04-05 Mateusz WarownyJAL-3878 Add uid to WS Tasks
2022-03-28 Mateusz WarownyJAL-3878 Patch preferences window to use new discoverer.
2022-03-28 Mateusz WarownyJAL-3878 Fix discoverer being stuck on BEGIN state...
2022-03-25 Mateusz WarownyJAL-3878 Add slivka discoverer and menu to AlignFrame
2022-03-25 Mateusz WarownyJAL-3878 Change align frame added to desktop to correct one
2022-03-25 Mateusz WarownyJAL-3878 Wrap infoPanel updates with SwingUtilities...
2022-03-25 Mateusz WarownyJAL-3878 Fix re-alignment-capable services detection.
2022-03-25 Mateusz WarownyJAL-3878 Clear services list on reload.
2022-03-25 Mateusz WarownyJAL-3878 Fix task status precedence calculation
2022-03-25 Mateusz WarownyJAL-3878 Fix NullPointerExceptions caused by nulls...
2022-03-25 Mateusz WarownyJAL3878 Implement slivka service discoverer
2022-03-25 Mateusz WarownyJAL-3878 Move action name initialization to its own...
2022-03-25 Mateusz WarownyJAL-3878 Create ws2 client for slivka services
2022-03-25 Mateusz WarownyJAL-3878 Add builders to each service parameter class
2022-03-24 Mateusz WarownyJAL-3878 Create service agnostic param datastore and set
2022-03-23 Mateusz WarownyJAL-3878 Create beans for un/marshalling service parameters
2022-03-18 Mateusz WarownyJAL-3878 Create abstract ws discoverer providing common...
2022-03-15 Mateusz WarownyJAL-3878 Connect alignment services with gui
2022-03-14 Mateusz WarownyJAL-3878 Move array index search to ArrayUtils
2022-03-11 Mateusz WarownyJAL-3878 Create web service menu manager.
2022-03-11 Mateusz WarownyJAL-3878 Add hasPresets and hasParameters utility metho...
2022-03-09 Mateusz WarownyJAL-3878 Add WebServiceProviderI - a view of services.
2022-03-09 Mateusz WarownyJAL-3878 Improve performance of gap sequence construction.
2022-03-08 Mateusz WarownyJAL-3878 Add web service reference to actions.
2022-03-04 Mateusz WarownyJAL-3878 Change visibility of WebService methods to...
2022-03-03 Mateusz WarownyJAL-3878 Create alignment service "backend" classes
2022-03-03 Mateusz WarownyJAL-3878 Remove unused JobStatus methods
2022-03-03 Mateusz WarownyJAL-3878 Create abstract base classes for non-interacti...
2022-03-02 Mateusz WarownyJAL-3878 Fix typo in method name (getAlignemnt)
2022-03-02 Mateusz WarownyJAL-3878 Add serviceExecutor to AlignmentViewport.
2022-02-28 Mateusz WarownyJAL-3878 Separate server job handle from task's sub...
2022-02-18 Mateusz WarownyJAL-3878 Provide javadoc for WebServiceClientI interface
2022-02-18 Mateusz WarownyJAL-3878 Create skeleton for alignment service action
2022-02-18 Mateusz WarownyJAL-3878 Create abstract base class for actions.
2022-02-18 Mateusz WarownyJAL-3878 Fix typo in getTooltip method name
2022-02-18 Mateusz WarownyJAL-3878 Move WebServiceJob class to jalview.ws2.api...
2022-02-18 Mateusz WarownyJAL-3878 Move CredentialType class to jalview.ws2.api...
2022-02-18 Mateusz WarownyJAL-3878 Create TaskEventListener interface.
2022-02-18 Mateusz WarownyJAL-3878 Create action and task interfaces.
2022-02-17 Mateusz WarownyJAL-3878 Add interactive flag to WebService class
2022-02-17 Mateusz WarownyJAL-3878 Create web service class - container for servi...
2022-02-17 Mateusz WarownyJAL-3878 Add WebServiceJob class.
2022-02-16 Mateusz WarownyJAL-3878 Add interfaces for classes dealing with server...
2022-02-15 Mateusz WarownyJAL-3878 Add universal id generator to MathUtils.
2021-12-23 Mateusz WarownyMerge branch 'JAL-3927_ws_preferences_dialog_fix' into... alpha/JAL-3066_Jalview_212_slivka-integration
2021-12-23 Mateusz WarownyMerge branch 'update/JAL-3066_updated_testng' into...
2021-11-25 Mateusz WarownyJAL-3927 Make url checks asynchronous in preferences...
2021-11-23 Mateusz WarownyJAL-3066 Fix ambiguous assertEquals casting values...
2021-11-23 Ben SoaresJAL-3066 Vastly updated testng libs
2021-11-18 Mateusz WarownyJAL-3066 Remove redundant throws declaration from Slivk...
2021-11-16 Mateusz WarownyMerge branch 'JAL-3866_RNAalifold-slivka-client' into...
2021-11-16 Mateusz WarownyMerge branch 'alpha/JAL-3899_deuniquify_refactor' into...
2021-10-07 Mateusz WarownyJAL-3899 Replace prints with logger messages. alpha/JAL-3899_deuniquify_refactor
2021-10-06 Mateusz WarownyJAL-3899 Update usages of uniquify and deuniquify.
2021-10-06 Mateusz WarownyJAL-3899 Refactor sequence de/uniquification.
2021-09-02 Mateusz WarownyAdd RNAalifold service instance to slivka web services. JAL-3866_RNAalifold-slivka-client
2021-07-29 Mateusz WarownyMerge branch 'improvement/JAL-3848_slivka_0.8' into...
2021-07-27 Mateusz WarownyMerge branch 'bug/JAL-3807_jpred-with-slivka' into...
2021-07-27 Mateusz WarownyMerge commit '0b438477b16470202bddfecb54e0587036b37202...
2021-07-27 Mateusz WarownyJAL-3066 Fix NullPointerException thrown when showing...
2021-07-25 Jim ProcterJAL-3854 patched SeqSeqUtils.deUniquify to not use... improvement/JAL-3848_slivka_0.8
2021-07-25 Jim ProcterJAL-2994 disable tests for FileUtils path search method...
2021-07-25 Jim ProcterJAL-3848 slivka preferences in javascript
2021-07-25 Jim ProcterJAL-3848 reinstate Fetch DB References submenu
2021-07-25 Jim ProcterJAL-3848 update jalview core with slivka classes, examp...
2021-07-25 Jim ProcterJAL-3848 add compbio and jalview to direct connection...
2021-07-25 Jim ProcterJAL-3853 - tweak test again - since failed a few commit...
2021-07-25 Jim ProcterJAL-3848 update swingJS runtime and transpiler to 3.3.1
2021-07-25 Jim ProcterMerge branch 'improvement/JAL-3848_slivka_0.8' of https...
2021-07-23 Mateusz WarownyJAL-3848 Update slivka client javajs library.
2021-07-22 Jim ProcterJAL-3671 hardwire log4j.root logger to INFO to supress...
2021-07-22 Jim ProcterJAL-3848 enable slivka services dialog in JalviewJS
2021-07-22 Jim ProcterJAL-3853 JAL-1870 toggle to enable/disable posterior...
2021-07-22 Jim ProcterJAL-3853 JAL-1870 patch tests for annotation colour...
2021-07-22 Jim ProcterJAL-1950 patch groovy bootstrap for importing hmmer3...
2021-07-22 Jim ProcterJAL-3853 patch sequence annotation report code and...
2021-07-22 Jim ProcterJAL-3848 ensure annotation from a service gets a calcId...
2021-07-22 Jim ProcterJAL-3848 don’t include sequence limits in sequence...
2021-07-22 Jim ProcterJAL-3848 - actually test the Slivka and JABAWS disorder...
2021-07-21 Mateusz WarownyJAL-3848 print exception for failed align jobs
2021-07-21 Mateusz WarownyJAL-3848 add latest slivka-client fixes.
2021-07-09 Mateusz WarownyMerge branch 'jpred-fix' into bug/JAL-3807_jpred-with... bug/JAL-3807_jpred-with-slivka
2021-07-09 Mateusz WarownyJAL-3807 Fix SlivkaWSInstance not fetching alignments.
2021-07-09 Mateusz WarownyMerge branch 'bug/JAL-3849_aacon-parameters' into impro...
2021-07-09 Mateusz WarownyJAL-3690 Remove references to old AlignCalcManager. bug/JAL-3849_aacon-parameters
2021-07-08 Mateusz WarownyJAL-3848 SlivkaParamSet: reformat code and add service...
2021-07-08 Mateusz WarownyJAL-3848 Update slivka client library.
2021-07-08 Mateusz WarownyJAL-3849 Remove join() which blocked the ui.
2021-02-22 Mateusz WarownyJAL-3807 - Add single sequence capabilities to jws2...
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