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jalview.git
2015-05-07 gmungocJAL-1575 bare bones RestHandler added commit | commitdiff | tree | snapshot
2015-05-07 Jim ProcterJAL-1731 fix JPred4 citation in legacy client code commit | commitdiff | tree | snapshot
2015-05-07 Jim ProcterJAL-1551 formatting commit | commitdiff | tree | snapshot
2015-05-07 Jim ProcterJAL-1601 migrated the JABAWS 2.1 jpred burial represent... commit | commitdiff | tree | snapshot
2015-05-06 gmungocMerge branch 'Release_2_9_Branch' of https://source... commit | commitdiff | tree | snapshot
2015-05-06 gmungocJAL-1725 broadcast empty selection (to clear selection) features/JAL-1725chimeraListener commit | commitdiff | tree | snapshot
2015-05-06 gmungocJAL-1725 limit thread pool size; prefix /jalview to... commit | commitdiff | tree | snapshot
2015-05-06 gmungocJAL-1725 parse atomSpec with submodel; debug output... commit | commitdiff | tree | snapshot
2015-05-06 gmungocJAL-1725 fix for redirect of POST to GET, debug output... commit | commitdiff | tree | snapshot
2015-05-05 gmungocJAL-1725 jetty libraries added to classpath commit | commitdiff | tree | snapshot
2015-05-05 gmungocJAL-1725 first version of Jetty server / chimera select... commit | commitdiff | tree | snapshot
2015-05-01 tcofoegbuMerge branch 'bug/JAL-1700_PDB-rest-api-error-handling... commit | commitdiff | tree | snapshot
2015-05-01 tcofoegbuJAL-1700 Improved the error handling mechanism for... commit | commitdiff | tree | snapshot
2015-05-01 tcofoegbuMerge branch 'bug/JAL-1726_External-integration-test_PD... commit | commitdiff | tree | snapshot
2015-05-01 tcofoegbuJAL-1726 Added external integration test for PDB Rest API commit | commitdiff | tree | snapshot
2015-05-01 gmungocJAL-1684 hook added to test for fields ignored in copy... commit | commitdiff | tree | snapshot
2015-05-01 gmungocJAL-1690 refining 'copy format from' as applied to... commit | commitdiff | tree | snapshot
2015-05-01 gmungocJAL-1690 unused fields removed commit | commitdiff | tree | snapshot
2015-04-30 Mungo CarstairsJAL-845 reduced height to allow for Desktop decorators... commit | commitdiff | tree | snapshot
2015-04-30 tcofoegbuMerge branch 'bug/JAL-1717_make-pbd-id-case_insensitive... commit | commitdiff | tree | snapshot
2015-04-30 tcofoegbuJAL-1717 updated the PDBEntry model and updated the... commit | commitdiff | tree | snapshot
2015-04-29 gmungocJAL-1690 preserve scaling in New View, synch id width... commit | commitdiff | tree | snapshot
2015-04-29 gmungocJAL-1686 ViewStyle.hashCode implemented commit | commitdiff | tree | snapshot
2015-04-28 gmungocMerge branch 'Release_2_9_Branch' of https://source... commit | commitdiff | tree | snapshot
2015-04-28 gmungocJAL-1684 removed reflection from ViewStyle (to Junit... commit | commitdiff | tree | snapshot
2015-04-28 tcofoegbuMerge branch 'features/JAL-1714_specify-mulitple-id_PDB... commit | commitdiff | tree | snapshot
2015-04-28 tcofoegbuJAL-1711 and JAL-1714 documentation updated commit | commitdiff | tree | snapshot
2015-04-28 tcofoegbuMerge branch 'features/JAL-1714_specify-mulitple-id_PDB... commit | commitdiff | tree | snapshot
2015-04-28 tcofoegbuJAL-1711 and JAL-1714 documentation updated commit | commitdiff | tree | snapshot
2015-04-27 tcofoegbuMerge branch 'bug/JAL-1715_PDB-Search-selection-validat... commit | commitdiff | tree | snapshot
2015-04-27 tcofoegbuJAL-1715 implemented selection validation for the new... commit | commitdiff | tree | snapshot
2015-04-27 tcofoegbuMerge branch 'features/JAL-1714_specify-mulitple-id_PDB... commit | commitdiff | tree | snapshot
2015-04-27 tcofoegbuJAL-1714 improved the new PDB Sequence fetcher by enabl... commit | commitdiff | tree | snapshot
2015-04-27 Jim ProcterJAL-1645 Release_2_9 branch build tag commit | commitdiff | tree | snapshot
2015-04-27 gmungocMerge branch 'Release_2_8_3_Branch' of https://source... commit | commitdiff | tree | snapshot
2015-04-27 gmungocJAL-1691 more stable linked scrolling across split... commit | commitdiff | tree | snapshot
2015-04-24 tcofoegbuMerge branch 'features/JAL-1711_PDB-specify-chain'... commit | commitdiff | tree | snapshot
2015-04-24 tcofoegbuMerge branch 'Release_2_8_3_Branch' of https://source... commit | commitdiff | tree | snapshot
2015-04-24 tcofoegbuJAL-1710, JAL-1711 Bug fix for exception thrown when... commit | commitdiff | tree | snapshot
2015-04-24 gmungocJAL-1691 prevent propagation of scrolling on mouseover... commit | commitdiff | tree | snapshot
2015-04-24 tcofoegbuMerge branch 'bug/JAL-1707_retrieve-pdb-structure-for... commit | commitdiff | tree | snapshot
2015-04-24 tcofoegbuJAL-1707 bug fix - also search using sequence name commit | commitdiff | tree | snapshot
2015-04-23 gmungocJAL-1702 corrected check for 'no colours selected' commit | commitdiff | tree | snapshot
2015-04-23 gmungocJAL-1706 distinguish between 'font too small' and ... commit | commitdiff | tree | snapshot
2015-04-23 gmungocJAL-1681 create mappings before AlignFrame to ensure... commit | commitdiff | tree | snapshot
2015-04-23 gmungocJAL-845 only 'follow' sort command in coding complement... commit | commitdiff | tree | snapshot
2015-04-23 gmungocJAL-845 set split frame divider safely for eXpand Views commit | commitdiff | tree | snapshot
2015-04-23 gmungocMerge branch 'Release_2_8_3_Branch' of https://source... commit | commitdiff | tree | snapshot
2015-04-23 gmungocJAL-1706 fixed to correctly restore the last dialog... commit | commitdiff | tree | snapshot
2015-04-22 tcofoegbuJAL-1667_1668 updated help doc commit | commitdiff | tree | snapshot
2015-04-22 tcofoegbuMerge branch 'features/JAL-1667_1668-documentation... commit | commitdiff | tree | snapshot
2015-04-22 tcofoegbuJAL-1667_1668 added help documentation for PDB Sequence... commit | commitdiff | tree | snapshot
2015-04-22 gmungocJAL-845 fix SplitFrame sizing on eXpand Views commit | commitdiff | tree | snapshot
2015-04-22 gmungoc'Test' added to help identify "too small" font families... commit | commitdiff | tree | snapshot
2015-04-22 gmungocJAL-1690 fix NPE on Cancel when not in split frame commit | commitdiff | tree | snapshot
2015-04-21 tcofoegbuJAL-1667_1668 Updated documentation commit | commitdiff | tree | snapshot
2015-04-21 gmungocJAL-1693 mappings added back to the original alignment commit | commitdiff | tree | snapshot
2015-04-21 gmungocJAL-1702 wording improved; also some duplicate entries... commit | commitdiff | tree | snapshot
2015-04-21 tcofoegbuJAL-1667_1668 Documentation - Added a separate help... commit | commitdiff | tree | snapshot
2015-04-20 gmungocJAL-1690 shorter text to fit in FontChooser dialog commit | commitdiff | tree | snapshot
2015-04-20 gmungocJAL-1701 first draft of help page for Split View (not... commit | commitdiff | tree | snapshot
2015-04-17 tcofoegbuMerge branch 'bug/JAL-1697_browse-local-structures... commit | commitdiff | tree | snapshot
2015-04-17 tcofoegbuJAL-1697 added ablity to select/view cached structures... bug/JAL-1697_browse-local-structures commit | commitdiff | tree | snapshot
2015-04-17 tcofoegbuMerge branch 'bug/JAL-1698_Append-Structures' into... commit | commitdiff | tree | snapshot
2015-04-17 tcofoegbuJAL-1698 bug fix to enable addition of a single structu... bug/JAL-1698_Append-Structures commit | commitdiff | tree | snapshot
2015-04-17 tcofoegbuJAL-1668 updated documentation commit | commitdiff | tree | snapshot
2015-04-14 gmungocJAL-1693 generate multiple exon sequences for 1-many... commit | commitdiff | tree | snapshot
2015-04-14 tcofoegbuMerge branch 'bug/Jal-1696_disable-pdb_id-field-setting... commit | commitdiff | tree | snapshot
2015-04-14 tcofoegbuJAL-1696 disabled editing of PDB Id field from settings bug/Jal-1696_disable-pdb_id-field-settings commit | commitdiff | tree | snapshot
2015-04-14 tcofoegbuMerge branch 'Release_2_8_3_Branch' of https://source... commit | commitdiff | tree | snapshot
2015-04-13 gmungocJAL-1695 enableSplitFrame=true for applet example commit | commitdiff | tree | snapshot
2015-04-13 gmungocJAL-1690 adjusted wording commit | commitdiff | tree | snapshot
2015-04-13 gmungocJAL-1693 make exon alignment for get-xref splitframe... commit | commitdiff | tree | snapshot
2015-04-13 gmungocJAL-1681 work around ConcurrentModificationException... commit | commitdiff | tree | snapshot
2015-04-13 gmungocJAL-1690 show 'scale protein' in protein _and_ dna... commit | commitdiff | tree | snapshot
2015-04-13 gmungocJAL-1695 new property ENABLE_SPLIT_FRAME commit | commitdiff | tree | snapshot
2015-04-13 gmungocJAL-1695 parameter controls whether SplitFrame is enabled commit | commitdiff | tree | snapshot
2015-04-08 gmungocJAL-1684 adjusting parameters for split frame applet... commit | commitdiff | tree | snapshot
2015-04-08 gmungocJAL-1690 scaleProteinAsCdna new applet parameter documented commit | commitdiff | tree | snapshot
2015-04-08 gmungocJAL-1270 protection against NullPointer when run as... commit | commitdiff | tree | snapshot
2015-04-08 gmungocJAL-1691 applet SplitFrame scrolling; pull up of 5... commit | commitdiff | tree | snapshot
2015-04-08 gmungocJAL-1270 separated standalone tests out of Jws2ParamVie... commit | commitdiff | tree | snapshot
2015-04-07 gmungocJAL-1270 test added commit | commitdiff | tree | snapshot
2015-04-07 gmungocJAL-1691 linked scrollling in split frame (Desktop) commit | commitdiff | tree | snapshot
2015-04-07 gmungocJAL-1691 defensive check for null commit | commitdiff | tree | snapshot
2015-04-02 gmungocJAL-1690 'scale protein as cDNA' options in Preferences... commit | commitdiff | tree | snapshot
2015-04-01 gmungocJAL-845 fixed start/end range of a mapped SequenceGroup commit | commitdiff | tree | snapshot
2015-04-01 gmungocJAL-1264 reinstate Show annotations menu item commit | commitdiff | tree | snapshot
2015-03-30 gmungocJAL-1264 remove broken applet build dependencies commit | commitdiff | tree | snapshot
2015-03-30 gmungocJAL-1270 fall back on compbio if no localhost:8080... commit | commitdiff | tree | snapshot
2015-03-30 gmungocJAL-1596 refactoring to allow unit tests to start and... commit | commitdiff | tree | snapshot
2015-03-30 gmungocJAL-1270 Cache.logger initialisation added commit | commitdiff | tree | snapshot
2015-03-27 tcofoegbuMerge branch 'merge/JAL-1667_PDBe_Search_API' into... commit | commitdiff | tree | snapshot
2015-03-27 tcofoegbuJAL-1667 updated the collection type for searchSummaryF... commit | commitdiff | tree | snapshot
2015-03-27 tcofoegbuMerge branch 'merge/JAL-1667_PDBe_Search_API' into... commit | commitdiff | tree | snapshot
2015-03-27 tcofoegbumerge commit commit | commitdiff | tree | snapshot
2015-03-26 tcofoegbuJAL-1667 updated parseJsonExceptionString method in... features/JAL-1667_PDBe_Search_API commit | commitdiff | tree | snapshot
2015-03-26 tcofoegbuUpdated BioJsHTMLOutputTest asserts to include error... commit | commitdiff | tree | snapshot
2015-03-26 tcofoegbuMerge branch 'Release_2_8_3_Branch' of https://source... commit | commitdiff | tree | snapshot
2015-03-26 tcofoegbuModified BioJsHTMLOutputTest to test specific json... commit | commitdiff | tree | snapshot
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