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2015-11-30 Jim ProcterJAL-1950 optionally just delete any redundant sequences... commit | commitdiff | tree | snapshot
2015-11-17 Jim ProcterJAL-1950 represent duplicate sequences by their represe... commit | commitdiff | tree | snapshot
2015-11-16 Jim ProcterJAL-1950 group hits by architecture commit | commitdiff | tree | snapshot
2015-11-16 Jim ProcterJAL-1950 formatting commit | commitdiff | tree | snapshot
2015-11-16 Jim ProcterJAL-1958 modulate per-sequence shading with local score... commit | commitdiff | tree | snapshot
2015-11-16 Jim ProcterJAL-1950 add domain architecture feature commit | commitdiff | tree | snapshot
2015-11-09 Jim ProcterJAL-1950 JAL-1958 bitscore is more effective for shadin... commit | commitdiff | tree | snapshot
2015-11-09 Jim ProcterJAL-1950 - JAL-1958 hardwired hack to explore shading... commit | commitdiff | tree | snapshot
2015-11-09 Jim ProcterJAL-1950 transfer posterior probability onto hit sequences commit | commitdiff | tree | snapshot
2015-11-09 Jim ProcterJAL-1950 magic keys for different parts of the JSON... commit | commitdiff | tree | snapshot
2015-11-09 Jim ProcterJAL-1950 javadoc: clarify AlignmentAnnotation.createSeq... commit | commitdiff | tree | snapshot
2015-11-09 Jim ProcterJAL-1950 test positioning of posterior probability... commit | commitdiff | tree | snapshot
2015-11-04 Jim ProcterJAL-1950 hook up JSON result dump parser to hmmerClient commit | commitdiff | tree | snapshot
2015-11-04 Jim ProcterJAL-1950 first stab at Hmmer3 JSON parser and alignment... commit | commitdiff | tree | snapshot
2015-11-04 Jim ProcterJAL-1950 - cache URL as a local file (needs a test... commit | commitdiff | tree | snapshot
2015-11-02 Jim ProcterJAL-1950 keys for hmm search score file parser. not... commit | commitdiff | tree | snapshot
2015-11-02 Jim ProcterJAL-1950 structuring methods and note on parsing flat... commit | commitdiff | tree | snapshot
2015-11-02 Jim ProcterJAL-1934 conditional evaluation structure not needed commit | commitdiff | tree | snapshot
2015-11-02 Jim ProcterJAL-1934 new preference to disable gap character normal... commit | commitdiff | tree | snapshot
2015-10-28 Jim ProcterJAL-1950 JAL-715 fall through for 201 ‘CREATED’ codes... commit | commitdiff | tree | snapshot
2015-10-28 Jim ProcterJAL-1950 extremely rough prototype submission/poll... commit | commitdiff | tree | snapshot
2015-10-28 Jim ProcterJAL-715 tidy up the job poll loop ready to adapt for... commit | commitdiff | tree | snapshot
2015-10-28 Jim ProcterJAL-715 JAL-724 refactored multi harmony definition... commit | commitdiff | tree | snapshot
2015-10-23 gmungocJAL-1943 don't try to unmarshal non-xml files in V1... commit | commitdiff | tree | snapshot
2015-10-22 gmungocJAL-1932 TrimRegionCommand bug fix, tests and purge... commit | commitdiff | tree | snapshot
2015-10-16 Jim ProcterJAL-1925 version change commit | commitdiff | tree | snapshot
2015-10-16 Jim ProcterJAL-1925 update what's new and release notes commit | commitdiff | tree | snapshot
2015-10-15 Jim ProcterJAL-1791 remove blanket sign of examples/*.jar commit | commitdiff | tree | snapshot
2015-10-15 Jim ProcterJAL-1791 id rather than name attrib commit | commitdiff | tree | snapshot
2015-10-15 Jim ProcterJAL-1791 sign the applet with/out timestamps commit | commitdiff | tree | snapshot
2015-10-15 Jim ProcterJAL-1791 add explicit proxy for benefit of jalview... commit | commitdiff | tree | snapshot
2015-10-15 Jim ProcterJAL-1791 fix ant target dependencies commit | commitdiff | tree | snapshot
2015-10-15 Jim ProcterJAL-1791 make timestamping optional using -Dtimestamp commit | commitdiff | tree | snapshot
2015-10-15 Jim ProcterJAL-1791 add jalview.tsaurl for specifying timestamp... commit | commitdiff | tree | snapshot
2015-10-15 Jim ProcterJAL-1791 add jalview.tsaurl for specifying timestamp... commit | commitdiff | tree | snapshot
2015-10-15 Jim ProcterMerge branch 'bug/JAL-1923_290b2_group_annots' into... commit | commitdiff | tree | snapshot
2015-10-15 Jim ProcterJAL-1923 formatting commit | commitdiff | tree | snapshot
2015-10-15 Jim ProcterJAL-1923 add groups to codon-complement and notify... commit | commitdiff | tree | snapshot
2015-10-15 Jim ProcterJAL-1923 fix: don’t add group twice commit | commitdiff | tree | snapshot
2015-10-08 Jim ProcterJAL-1684 updated fragment alignment for example and... commit | commitdiff | tree | snapshot
2015-10-08 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie... commit | commitdiff | tree | snapshot
2015-10-08 Jim ProcterJAL-1894 add licensing commit | commitdiff | tree | snapshot
2015-10-08 tcofoegbuJAL-1912 JAL-1896 release notes updated commit | commitdiff | tree | snapshot
2015-10-08 Jim ProcterJAL-1894 update what's new commit | commitdiff | tree | snapshot
2015-10-08 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie... commit | commitdiff | tree | snapshot
2015-10-08 tcofoegbuJAL-1912 JAL-1896 release notes updated commit | commitdiff | tree | snapshot
2015-10-08 gmungocJAL-1544 typo fix commit | commitdiff | tree | snapshot
2015-10-08 Jim ProcterJAL-1894 formatting commit | commitdiff | tree | snapshot
2015-10-08 Jim ProcterJAL-1894 organise imports commit | commitdiff | tree | snapshot
2015-10-08 tcofoegbumerge commit | commitdiff | tree | snapshot
2015-10-07 Jim ProcterJAL-1894 source formatting commit | commitdiff | tree | snapshot
2015-10-07 Jim ProcterJAL-1894 organise imports commit | commitdiff | tree | snapshot
2015-10-07 Jim ProcterJAL-1894 update release date commit | commitdiff | tree | snapshot
2015-10-07 tcofoegbuJAL-1912 added documentation commit | commitdiff | tree | snapshot
2015-10-07 Jim ProcterJAL-1912 formatting commit | commitdiff | tree | snapshot
2015-10-07 Jim ProcterJAL-1912 javadoc for adjustForAlignment stating current... commit | commitdiff | tree | snapshot
2015-10-07 Jim ProcterJAL-1912 efficiency: look up sequenceMapping once per... commit | commitdiff | tree | snapshot
2015-10-07 Jim ProcterMerge branch 'features/JAL-1912_biojson-per-sequence... commit | commitdiff | tree | snapshot
2015-10-05 tcofoegbuJAL-1912 house keeping commit | commitdiff | tree | snapshot
2015-10-05 tcofoegbuJAL-1912 added null check for SequenceMapping variable... commit | commitdiff | tree | snapshot
2015-10-05 gmungocJAL-1812 set/return currentAlFrame for Groovy in headle... commit | commitdiff | tree | snapshot
2015-10-05 Jim ProcterMerge branch 'develop' into features/JAL-1912_biojson... commit | commitdiff | tree | snapshot
2015-10-05 Jim ProcterJAL-1894 note about menu option bugfix JAL-1865 JAL... commit | commitdiff | tree | snapshot
2015-10-05 Jim ProcterJAL-1894 update release notes for JAL-1815 JAL-1860 commit | commitdiff | tree | snapshot
2015-10-05 gmungocJAL-1684 JAL-1452 new applet parameters defaultColourNuc commit | commitdiff | tree | snapshot
2015-10-05 tcofoegbumerge commit | commitdiff | tree | snapshot
2015-10-05 tcofoegbuJAL-1908 bugfix commit | commitdiff | tree | snapshot
2015-10-05 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie... commit | commitdiff | tree | snapshot
2015-10-05 Jim ProcterJAL-1684 trimmed proteins to just those sequences that... commit | commitdiff | tree | snapshot
2015-10-05 tcofoegbumerge commit | commitdiff | tree | snapshot
2015-10-05 tcofoegbuJAL-1726 updated test error msg commit | commitdiff | tree | snapshot
2015-10-05 tcofoegbuJAL-1912 updated AnnotationDisplaySettingPojo commit | commitdiff | tree | snapshot
2015-10-02 gmungocJAL-1815 restore split frame geometry including horizon... commit | commitdiff | tree | snapshot
2015-10-02 Jim ProcterJAL-1900 JAL-1625 disable iconify button for internal... commit | commitdiff | tree | snapshot
2015-10-01 Jim ProcterJAL-1894 release notes update and 6th October release... commit | commitdiff | tree | snapshot
2015-10-01 tcofoegbuJAL-1912 Double.NaN breaks JSON serialization - added... commit | commitdiff | tree | snapshot
2015-10-01 tcofoegbuJAL-1912 refactor annotation refsequence assignemnt... commit | commitdiff | tree | snapshot
2015-09-30 tcofoegbuhouse keeping commit | commitdiff | tree | snapshot
2015-09-30 tcofoegbuJAL-1860 house keeping commit | commitdiff | tree | snapshot
2015-09-30 tcofoegbuJAL-1852 made disabling querying of unpublished PDB... commit | commitdiff | tree | snapshot
2015-09-30 tcofoegbuJAL-1912 added support of tcoffee annotation and other... commit | commitdiff | tree | snapshot
2015-09-30 tcofoegbumerge commit | commitdiff | tree | snapshot
2015-09-30 tcofoegbuJAL-1852 disable querying of unpublished PDB entries... commit | commitdiff | tree | snapshot
2015-09-30 Jim Procterfix for JAL-1883 commit | commitdiff | tree | snapshot
2015-09-29 tcofoegbuJAL-1896 fixed NPE for RNA Helice without equivalent... commit | commitdiff | tree | snapshot
2015-09-28 tcofoegbumerge commit | commitdiff | tree | snapshot
2015-09-28 tcofoegbuJAL-1896 revised implementation to construct a ColourSc... commit | commitdiff | tree | snapshot
2015-09-28 gmungocJAL-1909 repaint complementary alignment panel after... commit | commitdiff | tree | snapshot
2015-09-25 gmungocJAL-1859 try hoverDelay of 0.1s in Jmol for more respon... commit | commitdiff | tree | snapshot
2015-09-25 tcofoegbumerge commit | commitdiff | tree | snapshot
2015-09-25 tcofoegbuJAL-1907 bugfix for NPE while parsing a features file commit | commitdiff | tree | snapshot
2015-09-25 gmungocJAL-1815 restore split frame geometry correctly includi... commit | commitdiff | tree | snapshot
2015-09-25 tcofoegbumerge commit | commitdiff | tree | snapshot
2015-09-25 tcofoegbuJAL-1860 disabled default enter behaviour on pdb search... commit | commitdiff | tree | snapshot
2015-09-24 gmungocJAL-1905 parse url including & correctly commit | commitdiff | tree | snapshot
2015-09-24 gmungocJAL-1904 parse feature file colours on to alignment... commit | commitdiff | tree | snapshot
2015-09-24 tcofoegbuJAL-1860 only allow enter key when valid selection... commit | commitdiff | tree | snapshot
2015-09-24 tcofoegbuJAL-1860 keyboard operation of pdb sequence fetcher... commit | commitdiff | tree | snapshot
2015-09-24 tcofoegbumerge commit | commitdiff | tree | snapshot
2015-09-24 tcofoegbuJAL-1896 bugfix to enabled Jalview restore clustal... commit | commitdiff | tree | snapshot
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