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jalview.git
2011-09-14
jprocter
test data for JAL-701
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2011-09-14
jprocter
patch for NPE (not clear if NPE is evidence of deeper...
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2011-09-14
jprocter
JAL-766 JAL-733 - new alignment->jmol associations...
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2011-09-14
jprocter
JAL-766 JAL-733 - new alignment->jmol associations...
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2011-09-14
jprocter
fix for JAL-930
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2011-09-14
jprocter
JAL-766 JAL-733 - new alignment->jmol associations...
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2011-09-12
jprocter
JAL-927 ensure api method calls that affect GUI state...
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2011-09-05
jprocter
note about ensuring callers of loadAlignment(..) save...
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2011-08-30
jprocter
patch for JAL-731
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2011-08-30
jprocter
patch for JAL-729 - NPE avoided and cut and paste impor...
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2011-08-30
jprocter
JAL-915 - ensured that exceptions are not raised in...
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2011-08-30
jprocter
fix for JAL-917 - ensure all sequence strings are made...
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2011-08-30
jprocter
fix for JAL-917 - ensure all sequence strings are made...
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2011-08-30
jprocter
JAL-715 - conditional to hide the RSBS service editing...
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2011-08-30
jprocter
JAL-715 rsbs service editing
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2011-08-30
jprocter
JAL-715 JalviewDialog for RSBS service editing pane
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2011-08-30
jprocter
JAL-715 store/reset .jalview_properties setting for...
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2011-08-30
jprocter
JAL-715 serialise and deserialise multiple rest client...
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2011-08-30
jprocter
JAL-715 - notify user of parsing problems for results...
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2011-08-30
jprocter
retrieve URL for datasource of packed set
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2011-08-30
jprocter
ensure parsing errors and 'lack of data' errors are...
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2011-08-30
jprocter
JAL-715 need to URLencode constant values when serializ...
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2011-08-29
jprocter
JAL-715 - grammar for warning message.
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2011-08-29
jprocter
added notes on third party library licencing and update...
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2011-08-29
jprocter
JAL-919, JAL-715 - prototype service editing dialog...
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2011-08-29
jprocter
JAL-633, JAL-591 - refactored ArgumentI.getValue from...
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2011-08-29
jprocter
refactored popup dialog boilerplate code to own class
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2011-08-29
jprocter
JAL-633 simple concrete parameter and option objects...
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2011-08-29
jprocter
JAL-633, JAL-591 - refactored ArgumentI.getValue from...
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2011-08-25
jprocter
constructor only needs GUI container interface
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2011-08-25
jprocter
JAL-591 - refactored web service parameter dialog to...
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2011-08-25
jprocter
JAL-715 - better validation logic
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2011-08-25
jprocter
debug dialog
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2011-08-25
jprocter
JAL-715 - prevent empty elements being generated
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2011-08-24
jprocter
JAL-715 dialog for interactively editing a new or exist...
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2011-08-24
jprocter
new Swing and SWT capable form layout manager - miglayout
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2011-08-24
jprocter
JAL-715 bugfixes and refactor of parsing code for use...
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2011-08-24
jprocter
refactor labelled button creator to JvSwingUtils
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2011-08-23
jprocter
JAL-715 - simple tests and functions for IO of service...
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2011-08-23
jprocter
JAL-715 - allow rest service attributes to be exported...
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2011-08-19
jprocter
JAL-908 JAL-912 JAL-516 documented annotation HTML...
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2011-08-19
jprocter
JAL-908,JAL-701 - patch applet to strip HTML tags from...
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2011-08-19
jprocter
JAL-908 JAL-701 refactored HTML escape/unescape code...
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2011-08-18
jprocter
testdata for JAL-701 and JAL-908
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2011-08-18
jprocter
remove debug message
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2011-08-18
jprocter
fix for JAL-701 - ensure '<' appears in tooltip in...
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2011-08-18
jprocter
minor efficiency refactor
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2011-08-18
jprocter
JAL-907 testdata for JAL-701
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2011-08-18
jprocter
JAL-907 - test data directory readme
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2011-08-17
jprocter
JAL-853 use service action attribute to index services...
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2011-08-17
jprocter
remove any trailing '/' from the URL before validation...
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2011-08-17
jprocter
avoid NPE race condition when several threads waiting...
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2011-08-17
jprocter
fix for JAL-888
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2011-08-17
jprocter
fix for JAL-888
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2011-08-17
jprocter
JAL-898 - ensure we only remove a clargs progress bar...
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2011-08-17
jprocter
JAL-813 fix - check whether conservation is applied...
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2011-08-17
jprocter
JAL-867 - rejigged layout to a single splitpane wide...
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2011-08-15
jprocter
JAL-750 automaticScrolling is true by default
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2011-08-15
jprocter
JAL-750 - automaticScrolling=true by default. Refactore...
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2011-08-15
jprocter
JAL-747 - warning dialog if Jalview can't resolve filen...
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2011-08-15
jprocter
JAL-904 added scrollToRow and scrollToColumn methods...
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2011-08-05
jprocter
example script that will submit a muscle jabaws job...
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2011-08-05
jprocter
fetch groovy script from URL (JAL-899) and show progres...
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2011-08-05
jprocter
allow several progress bars on the desktop window ...
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2011-08-03
jprocter
Merge branch 'master' of https://source.jalview.org...
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2011-08-03
jprocter
refactored resolvetocodebase code and reused for resour...
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2011-08-03
jprocter
refactored resolvetocodebase code and reused for resour...
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2011-08-03
jprocter
fix NPE when applets stop. seems to make the simple...
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2011-08-03
jprocter
refactor schema to group swing window geometry attributes
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2011-07-28
jprocter
refer to local default setting for proxy when connecting to
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2011-07-28
jprocter
added 'since 2.x notes to parameters'. User configurabl...
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2011-07-26
jprocter
example alignment for JAL-862 - removed signal peptides
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2011-07-25
jprocter
use proper encoding for storing colour as user preferen...
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2011-07-22
jprocter
todo for JAL-860 - associate multiple sequences with...
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2011-07-22
jprocter
applet min/max annotation shading parameter documentati...
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2011-07-22
jprocter
ensure propagation of colour change on annotation updat...
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2011-07-22
jprocter
fix NPE when annotation colourgradient is applied
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2011-07-22
jprocter
code style
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2011-07-22
jprocter
default parameter for colours in annotation shading...
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2011-07-22
jprocter
method to get a user default colour (JAL-234)
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2011-07-21
jprocter
retrieve all sequences matching a particular name ...
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2011-07-21
jprocter
local instance of deployJava script from Sun/Oracle
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2011-07-21
jprocter
refined applet example on examples page
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2011-07-21
jprocter
better layout and structure display on startup
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2011-07-21
jprocter
ensure contents of hash is extended JAL-876
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2011-07-18
jprocter
fixed mouseover problem - still need to deal with flick...
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2011-07-10
jprocter
progress when saving state (JAL-870) and hack to trap...
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2011-07-09
jprocter
documentation for menu item JAL-860
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2011-07-09
jprocter
menu item and constructor to open a bunch of structures...
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2011-07-09
jprocter
refactored from PopupMenu (for JAL-860)
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2011-07-09
jprocter
todo re JAL-732
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2011-07-09
jprocter
JAL-868 todo
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2011-07-08
jprocter
open each query result from an alignment datasource...
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2011-07-07
jprocter
comment re JAL-153
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2011-07-07
jprocter
Set job title correctly and pass reason why
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2011-07-07
jprocter
extract sequence from DNA bases like 'DG' (JAL-866)
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2011-07-06
jprocter
ensure selseq is trimmed to just sequences included...
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2011-07-05
jprocter
Revert "partial patch for JAL-411 - text rendered above...
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2011-07-05
jprocter
partial patch for JAL-411 - text rendered above features
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2011-07-05
jprocter
ensure javascript and jmol example directories are...
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