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jalview.git
2019-05-24 Ben SoaresJAL-3141 Fixed tests commit | commitdiff | tree | snapshot
2019-05-24 Ben SoaresJAL-3141 Reworked a lot of BackupFiles to allow the... commit | commitdiff | tree | snapshot
2019-05-22 Ben SoaresMerge branch 'bug/JAL-3141_backupfiles_prefs_widget_dis... commit | commitdiff | tree | snapshot
2019-05-22 gmungocJAL-3111 help file spelling correction commit | commitdiff | tree | snapshot
2019-05-21 gmungocJAL-3273 small correction to expected result calculation commit | commitdiff | tree | snapshot
2019-05-13 Jim ProcterMerge branch 'task/JAL-3247_Install4j_improvements... commit | commitdiff | tree | snapshot
2019-05-13 Ben SoaresMerge branch 'task/JAL-3236_install4j_linux_unix_userla... commit | commitdiff | tree | snapshot
2019-05-13 Ben SoaresJAL-3247 nogradle option on this mac build/install... commit | commitdiff | tree | snapshot
2019-05-13 Ben SoaresJAL-3247 JAL-3254 JAL-3260 Fixed: JVL file jalview... commit | commitdiff | tree | snapshot
2019-05-10 Jim ProcterMerge branch 'task/JAL-3246_local_getdown_files' into... commit | commitdiff | tree | snapshot
2019-05-10 Ben SoaresJAL-3246 JAL-3247 Reworked JVL files as getdown.txt... commit | commitdiff | tree | snapshot
2019-05-10 Jim ProcterMerge branch 'task/JAL-3236_install4j_linux_unix_userla... commit | commitdiff | tree | snapshot
2019-05-09 Ben SoaresJAL-3236 Added unixInstaller to install4jMediaTypes... commit | commitdiff | tree | snapshot
2019-05-09 Jim ProcterMerge branch 'task/JAL-3246_local_getdown_files' into... commit | commitdiff | tree | snapshot
2019-05-09 Ben SoaresJAL-3247 JAL-3254 Ensure .jvp and .jvl appear first... commit | commitdiff | tree | snapshot
2019-05-09 Ben SoaresJAL-3247 JAL-3254 Fixed file association launch behavio... commit | commitdiff | tree | snapshot
2019-05-08 Ben SoaresJAL-3246 add -Pgetdown_local=true to use local files commit | commitdiff | tree | snapshot
2019-05-08 Ben SoaresJAL-3247 JAL-3254 changing default location of jalview... commit | commitdiff | tree | snapshot
2019-05-08 Ben SoaresJAL-3247 JAL-3254 Getdown now opening any files thrown... commit | commitdiff | tree | snapshot
2019-05-08 Ben SoaresJAL-3247 JAL-3254 Automatically creating correct file... commit | commitdiff | tree | snapshot
2019-05-08 Ben SoaresJAL-3247 JAL-3254 Automatically creating correct file... commit | commitdiff | tree | snapshot
2019-05-08 Ben SoaresJAL-3247 Script to produce auto file association files... commit | commitdiff | tree | snapshot
2019-05-08 Ben SoaresJAL-3247 Note in launcher.log when using a JVL file commit | commitdiff | tree | snapshot
2019-05-07 Ben SoaresJAL-3247 Changed JVL file to be a props file, with... commit | commitdiff | tree | snapshot
2019-05-07 Ben SoaresJAL-3247 Script to automatically install Jalview from... commit | commitdiff | tree | snapshot
2019-05-07 Ben SoaresJAL-3247 Auto generated file associations from jalview... commit | commitdiff | tree | snapshot
2019-05-06 Ben SoaresJAL-3247 Allowing 'file' protocol URL with empty domain... commit | commitdiff | tree | snapshot
2019-05-06 Ben SoaresJAL-3247 Code changes to getdown. Double click open... commit | commitdiff | tree | snapshot
2019-05-06 Ben SoaresJAL-3247 improvements commit | commitdiff | tree | snapshot
2019-05-06 Ben SoaresJAL-3247 Some getdown image file changes/tidying commit | commitdiff | tree | snapshot
2019-05-06 gmungocJAL-3240 known issue for release notes commit | commitdiff | tree | snapshot
2019-05-06 gmungocJAL-3239 release note commit | commitdiff | tree | snapshot
2019-05-06 gmungocJAL-3244 release note commit | commitdiff | tree | snapshot
2019-05-06 gmungocMerge remote-tracking branch 'origin/bug/JAL-3239monosp... commit | commitdiff | tree | snapshot
2019-05-06 gmungocJAL-3244 delete obsolete method commit | commitdiff | tree | snapshot
2019-05-03 Ben SoaresJAL-3247 First attempt at getdown code to add macOS... commit | commitdiff | tree | snapshot
2019-05-03 Ben SoaresJAL-3247 Part way towards adding double-click opening... commit | commitdiff | tree | snapshot
2019-05-02 Ben SoaresJAL-3247 Improved file associations on macOS and Windows commit | commitdiff | tree | snapshot
2019-05-02 gmungocJAL-3239 draw EPS or SVG one character at a time (even... bug/JAL-3239monospacedEps commit | commitdiff | tree | snapshot
2019-05-02 gmungocMerge branch 'bug/JAL-3244jmolWindows' into develop commit | commitdiff | tree | snapshot
2019-05-02 gmungocJAL-3244 renamed Platform method for clarity bug/JAL-3244jmolWindows commit | commitdiff | tree | snapshot
2019-05-02 Ben Soaresadding another getdown file (produced during a getdown... commit | commitdiff | tree | snapshot
2019-05-02 Ben SoaresJAL-3247 jvp jvl File associations, JRE variablised... commit | commitdiff | tree | snapshot
2019-05-01 Ben SoaresFixed -Djvl=true in install4j JVM invocation commit | commitdiff | tree | snapshot
2019-05-01 Ben SoaresExtra JVL file association in the installer. Shadowed... commit | commitdiff | tree | snapshot
2019-05-01 gmungocJAL-3244 ignore file path separator when comparing... commit | commitdiff | tree | snapshot
2019-05-01 Ben SoaresMerge branch 'task/JAL-3243_PDB_free_text_error' into... commit | commitdiff | tree | snapshot
2019-04-30 Ben SoaresJAL-3243 Replaced javax.ws jar compatible with jersey... task/JAL-3243_PDB_free_text_error commit | commitdiff | tree | snapshot
2019-04-30 Ben SoaresJAL-3196 Correcting the source for getdown (already... commit | commitdiff | tree | snapshot
2019-04-30 gmungocJAL-3241 simplified enum constructors for classloadabil... commit | commitdiff | tree | snapshot
2019-04-29 gmungocJAL-2738 JAL-2743 update unit test to match new VCF... commit | commitdiff | tree | snapshot
2019-04-29 gmungocJAL-3003 help page mention EPS doesn't support transparency commit | commitdiff | tree | snapshot
2019-04-26 Jim ProcterJAL-3236 see also previous commit - tweak the install4j... commit | commitdiff | tree | snapshot
2019-04-26 Ben SoaresAdded a unixInstaller and unixArchive media-type to... commit | commitdiff | tree | snapshot
2019-04-26 Ben SoaresMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2019-04-26 Ben SoaresRemoving old commented out 'org.gradle.java.home='... commit | commitdiff | tree | snapshot
2019-04-26 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie... commit | commitdiff | tree | snapshot
2019-04-26 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2019-04-26 gmungocJAL-2743 class Javadoc commit | commitdiff | tree | snapshot
2019-04-26 gmungocJAL-2738 JAL-2743 properties to map VCF header to speci... commit | commitdiff | tree | snapshot
2019-04-26 Ben SoaresAlso removing eclipse .project and .settings from the... commit | commitdiff | tree | snapshot
2019-04-26 Ben SoaresRemoving .classpath from this branch commit | commitdiff | tree | snapshot
2019-04-26 Jim ProcterJAL-3150 examples/exampleFile.jvp for updated manual... commit | commitdiff | tree | snapshot
2019-04-26 Ben SoaresJAL-3233 Added isAMac check for -Xdock:icon addition... commit | commitdiff | tree | snapshot
2019-04-26 gmungocJAL-3010 borderless 'x' for "delete this filter condition" commit | commitdiff | tree | snapshot
2019-04-26 gmungocJAL-2808 better tooltip 'delete this condition' commit | commitdiff | tree | snapshot
2019-04-25 Jalview Build BoxJAL-3234 tidy up stdout on build commit | commitdiff | tree | snapshot
2019-04-25 Jalview Build BoxJAL-3234 allow gradle builds to run without having... commit | commitdiff | tree | snapshot
2019-04-25 Jalview Build BoxMerge branch 'task/JAL-3234_211_codesigning' into develop commit | commitdiff | tree | snapshot
2019-04-25 Jalview Build BoxMerge branch 'bug/JAL-3224_getdown_changed_to_unpack_tg... commit | commitdiff | tree | snapshot
2019-04-25 Ben SoaresJAL-3224 JAL-3225 Fixed help image mangling, moved... commit | commitdiff | tree | snapshot
2019-04-25 Jalview Build BoxMerge branch 'bug/JAL-3224_getdown_changed_to_unpack_tg... commit | commitdiff | tree | snapshot
2019-04-25 Jalview Build BoxJAL-3234 enable codesigning and executable-post-process... commit | commitdiff | tree | snapshot
2019-04-25 Jalview Build BoxJAL-3234 Gradle properties for signing: OSX_KEYSTORE... commit | commitdiff | tree | snapshot
2019-04-25 Ben SoaresJAL-3224 JAL-3225 Some fixes in install4j template... commit | commitdiff | tree | snapshot
2019-04-25 Ben SoaresJAL-3224 JAL-3225 To be compatible with install4j bundl... commit | commitdiff | tree | snapshot
2019-04-25 Ben SoaresJAL-3224 JAL-3225 Added lines to check for updates... commit | commitdiff | tree | snapshot
2019-04-25 Ben SoaresJAL-3224 Tidied up Network installers in install4j... commit | commitdiff | tree | snapshot
2019-04-24 Ben SoaresJAL-3224 minor fix for build.gradle and gradle eclipse commit | commitdiff | tree | snapshot
2019-04-24 Jim ProcterMerge branch 'task/JAL-3225_Integration_Gradle_building... commit | commitdiff | tree | snapshot
2019-04-24 Jim ProcterJAL-1929 JAL-3224 java 8 and java 11 specific getdown... commit | commitdiff | tree | snapshot
2019-04-24 Jim ProcterJAL-1929 JAL-3224 JRE getdown URLs must be relative... commit | commitdiff | tree | snapshot
2019-04-23 Jim ProcterJAL-3130 add JAVA_VERSION to shadowJar classifier so... commit | commitdiff | tree | snapshot
2019-04-23 Jim ProcterJAL-3130 make sure only libDistDir/*.jar are added... commit | commitdiff | tree | snapshot
2019-04-23 Jim ProcterMerge branch 'develop' into bug/JAL-3224_getdown_change... commit | commitdiff | tree | snapshot
2019-04-23 Jim ProcterJAL-1929 JAL-3224 getdown artefacts staged as getdown... commit | commitdiff | tree | snapshot
2019-04-23 Jim ProcterJAL-1929 JAL-3224 getdown channel structure is {build... commit | commitdiff | tree | snapshot
2019-04-22 Jim ProcterJAL-3224 JAL-3196 still trying to specify projectFile... commit | commitdiff | tree | snapshot
2019-04-22 Jim ProcterJAL-3224 JAL-3196 still trying to specify projectFile... commit | commitdiff | tree | snapshot
2019-04-22 Jim ProcterJAL-3224 JAL-3196 specify file object in projectFile... commit | commitdiff | tree | snapshot
2019-04-22 Jim ProcterJAL-3130 JAL-3224 patch URL paths to point to jalview... commit | commitdiff | tree | snapshot
2019-04-22 Jim ProcterJAL-3130 provide absolute module path as J11 compile... commit | commitdiff | tree | snapshot
2019-04-22 Jim ProcterMerge branch 'jims/JAL-3130_Java11_Gradle_publishing... commit | commitdiff | tree | snapshot
2019-04-20 gmungocJAL-2791 tailored message if find fails on selection... commit | commitdiff | tree | snapshot
2019-04-18 gmungocJAL-1793 basic help text for VCF option commit | commitdiff | tree | snapshot
2019-04-18 gmungocJAL-3111 additional release notes commit | commitdiff | tree | snapshot
2019-04-18 gmungocJAL-3111 small simplification of table tags, valign top commit | commitdiff | tree | snapshot
2019-04-18 gmungocJAL-3111 release notes first pass complete commit | commitdiff | tree | snapshot
2019-04-18 Ben SoaresJAL-3130 moved jar needed for getdown to libs (not... commit | commitdiff | tree | snapshot
2019-04-18 Ben SoaresJAL-3224 Removed JREs (these now need to be in ~/buildt... commit | commitdiff | tree | snapshot
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