jalview.git
2024-06-21 Ben SoaresMerge branch 'develop' into feature/JAL-3631_allow_jalv...
2024-06-21 Ben SoaresJAL-3631 Changed label for consistency
2024-06-21 Jim ProcterMerge branch 'improvement/JAL-4409_implement_extra_sche...
2024-06-21 Ben SoaresMerge branch 'improvement/JAL-4409_implement_extra_sche...
2024-06-21 Ben SoaresJAL-4409 Add two empty args to getdown call from instal...
2024-06-21 Ben SoaresJAL-4409 Don't merge JVL configs when changing appbase improvement/JAL-4409_implement_extra_schemes_in_getdown
2024-06-20 Ben SoaresJAL-4409 Use fixed 'latest' artifact URL
2024-06-20 Ben SoaresJAL-4409 Changes in BUILD channel appbase to tie in...
2024-06-20 Ben SoaresJAL-3631 Now sending launcher.appdir from within getdown
2024-06-19 Ben SoaresJAL-3631 Rename/rationalise informational system proper...
2024-06-18 Ben SoaresJAL-3631 macos dev install script incorporated into...
2024-06-18 Ben SoaresJAL-4358 slight improvement to detecting desktop creati...
2024-06-18 Ben SoaresJAL-3631 gradle-build-and-re-install script, works...
2024-06-18 Ben SoaresJAL-3631 Substantial additions to Getdown (through...
2024-06-17 Ben SoaresJAL-3631 Allow quick deployment of gradle build on...
2024-06-14 Ben SoaresMerge branch 'develop' into feature/JAL-3631_allow_jalv...
2024-06-14 Ben SoaresJAL-3631 Got rid of the USER_EXECUTABLE_NAME as it...
2024-06-14 Ben SoaresJAL-3631 Removed old non-user launcher. Labelled USERSP...
2024-06-14 Ben SoaresJAL-3631 JAL-4104 More consistent system property names...
2024-06-14 Ben SoaresJAL-3631 Allow -Pinstall4j_build_ids=MACOS-AARCH64...
2024-06-13 Ben SoaresJAL-3845 Add a popup error message, with instructions...
2024-06-13 Ben SoaresJAL-3631 New Installer icons. Getdown check that the...
2024-06-12 Ben SoaresJAL-3631 Name changes to system properties and a fallba...
2024-06-12 Ben SoaresJAL-3631 Spot system property triggers in getdown to...
2024-06-12 Ben SoaresJAL-3631 Add a new launcher in install4j to pass new...
2024-06-10 Ben SoaresMerge branch 'bug/JAL-4421_customise_volume_name_of_DMG...
2024-06-10 Jim ProcterJAL-4159 remove errant jalview source .zip
2024-06-07 Ben SoaresMerge branch 'develop' into improvement/JAL-4409_implem...
2024-06-07 Ben SoaresJAL-4421 Update the dev_masos_installer.sh to use new... bug/JAL-4421_customise_volume_name_of_DMG_installers
2024-06-06 Ben SoaresJAL-4420 Added some more filename extensions
2024-06-06 Ben SoaresJAL-4072 Add zip-slip check in getdown
2024-06-06 Jim ProcterMerge branch 'bug/JAL-4421_customise_volume_name_of_DMG...
2024-06-06 Ben SoaresJAL-4358 Add the JALVIEW: CREATED DESKTOP line to java...
2024-06-05 Ben SoaresJAL-4420 Allow associated files to be dragged on separa...
2024-06-05 Ben SoaresJAL-4409 Small refactoring of ArgParserUtils to allow...
2024-06-05 Ben SoaresMerge branch 'develop' into bug/JAL-4421_customise_volu...
2024-06-05 Ben SoaresJAL-4421 Downgrading ds_store to 1.3.0 for build server...
2024-06-05 Ben SoaresJAL-4421 Configuration for positioning icons in DMG
2024-06-05 Ben SoaresJAL-4421 Add --appname --appxpos --appypos to position...
2024-06-04 Ben SoaresJAL-4421 Remove the disk_image_alias from the backgroun...
2024-06-04 Ben SoaresJAL-4421 Allow JSON config file to be options (no icon...
2024-06-04 Jim ProcterMerge branch 'improvement/JAL-4409_implement_extra_sche...
2024-06-04 Jim ProcterJAL-4409 don't ignore gitignore !
2024-06-04 Jim ProcterJAL-4418 first development release for 2.11.4.0 - relea...
2024-06-04 Jim ProcterMerge branch 'feature/JAL-4159_pasimap' into develop
2024-06-04 Jim ProcterMerge branch 'releases/Release_2_11_3_Branch' into...
2024-06-04 Ben SoaresJAL-4421 Put correct VolumeIcon.icns file onto DMG...
2024-06-03 Ben SoaresJAL-4421 Icns to use as .VolumeIcon.icns in DMG volumes...
2024-06-03 Ben SoaresJAL-4421 Also add DMG filename to python script. Necess...
2024-05-31 Ben SoaresJAL-4421 Add DS_Store customisation to gradle. Add...
2024-05-31 Ben SoaresJAL-4421 Python script for customising DS_Store. Separ...
2024-05-29 Ben SoaresJAL-4409 Allow more URI schemes (e.g. file) to be opene...
2024-05-29 Ben SoaresJAL-4409 Allow more URI schemes (e.g. file) to filter...
2024-05-29 Ben SoaresJAL-4414 Add SocketTimeoutException to exceptions that...
2024-05-29 Ben SoaresJAL-3196 Need more memory for the install4j process...
2024-05-28 Ben SoaresJAL-4409 JAL-4160 Don't let getdown turn jalviewX:...
2024-05-28 Ben SoaresJAL-4417 Use a specified props file for consistent...
2024-05-28 Ben SoaresJAL-4409 TEMPORARY don't clean up image files from...
2024-05-28 Ben SoaresJAL-4409 Ensure the specific scheme jalviewx is only...
2024-05-28 Ben SoaresJAL-4409 Don't insist on HttpURLConnection, allows...
2024-05-27 Ben SoaresMerge branch 'develop' into improvement/JAL-4409_implem...
2024-05-24 Jim ProcterJAL-4159 fix up test for applicable filters for pasimap feature/JAL-4159_pasimap
2024-05-24 Jim ProcterJAL-4159 fix PairwiseAlignmentPanelTest - reinstate...
2024-05-24 Jim ProcterJAL-4159 peek in a Jalview project's PCA viewer's title...
2024-05-24 Jim ProcterJAL-4257 JAL-4159 JAL-789 tidy up passing of score...
2024-05-24 James ProcterJAL-789 pairwise alignment via calculations dialog...
2024-05-24 James ProcterJAL-4366 compute coverage on each side of the pairwise...
2024-05-24 Jim ProcterMerge branch 'jims/feature/JAL-4159_pasimap' into featu...
2024-05-24 Jim ProcterMerge branch 'features/JAL-4257_adjustablegapparams_nw...
2024-05-23 Jim ProcterJAL-4159 fix sense of console/alignment output suppress...
2024-05-23 Jim ProcterJAL-4159 disable the score model combo box when pasimap...
2024-05-23 MorellThomasmend
2024-05-23 MorellThomasFix PaSiMap taking scoreModels input and allow AlignSeq...
2024-05-23 MorellThomasFix PaSiMap not having the eigenvalues saved
2024-05-22 MorellThomasrevert build.gradle changes
2024-05-22 MorellThomasSave PaSiMap with Jalview Session
2024-05-22 MorellThomasRectanuglar selection changed to Mouse Button 3 drag
2024-05-21 Jim ProcterJAL-4259 set title using original alignment window... spike/JAL-4159_pasimap_2114_series
2024-05-21 Jim ProcterJAL-4159 implement bounds for PASIMAP calculation ...
2024-05-21 Jim ProcterJAL-4159 connectivity should be computed for the sequen...
2024-05-21 Jim ProcterJAL-4159 PASiMap currently doesn't support different...
2024-05-21 Jim ProcterJAL-4159 sometimes the progress bar may not be availabl...
2024-05-21 Ben SoaresJAL-1054 Change one more (unused) url.openStream to...
2024-05-21 Ben SoaresJAL-1054 Change the rest of the url.openConnection...
2024-05-21 Ben SoaresJAL-4409 Adjust usage of HttpUtils.equivalentJalviewURL...
2024-05-21 Ben SoaresJAL-4409 Make HttpUtils.equivalentJalviewUrlString...
2024-05-21 Jim ProcterMerge branch 'feature/JAL-4159_pasimap' into spike...
2024-05-21 Jim ProcterJAL-4356 release date for 2.11.3.3 is 22nd May 2025
2024-05-21 Jim ProcterJAL-4356 release date for 2.11.3.3 is 22nd May 2025 releases/Release_2_11_3_Branch Release_2_11_3_3
2024-05-20 Ben SoaresJAL-4409 Also interpret jalviewX:// URIs in Jalview...
2024-05-20 Ben SoaresJAL-4397 Another fix on linux
2024-05-17 Ben SoaresJAL-4420 Add some debugging statements
2024-05-17 Ben SoaresJAL-4420 Tests for new FileUtils methods
2024-05-17 Ben SoaresJAL-4420 Allow preprocessing of arguments if they are...
2024-05-17 Ben SoaresJAL-4409 Checking getdown jars up to date
2024-05-17 Ben SoaresJAL-3409 Add newline back into Buffered Reader in getdo...
2024-05-17 Ben SoaresJAL-4409 corrected the umount of dmg to hdiutil detach...
2024-05-16 Ben SoaresJAL-4409 Added remote JVL files for Linux/Windows
2024-05-16 Ben SoaresJAL-4409 Added multiple file open to getdown. Added...
2024-05-16 Jim ProcterJAL-4356 release notes for JAL-3978 patch
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