jalview.git
2015-06-18 Jim ProcterJAL-1780 JAL-653 moved AlignExportSettings reference...
2015-06-17 Jim ProcterJAL-1784 minimise data duplication, and report out...
2015-06-17 Jim ProcterJAL-1784 refactor parse method to directly parse FilePa...
2015-06-17 Jim ProcterMerge branch 'features/JAL-653_gffalignments' into...
2015-06-17 Jim ProcterMerge branch 'develop' into features/JAL-653_gffalignments features/JAL-653_gffalignments
2015-06-17 Jim ProcterMerge branch 'develop' into features/JAL-1780_export...
2015-06-17 Jim ProcterJAL-1783 add java 1.7 and 1.8 class numbers
2015-06-17 Jim ProcterMerge branch 'develop' into features/JAL-1780_export...
2015-06-17 tcofoegbuJAL-1780 more support for export setting for flatfile... features/JAL-1780_export-settings_flatfile
2015-06-17 tcofoegbuJAL-1780 Export settings for flatfile output
2015-06-17 gmungocJAL-1588 restore ChimeraViewFrame geometry as well
2015-06-17 gmungocMerge branch 'develop' of https://source.jalview.org...
2015-06-17 gmungocJAL-1778 reinstated this.ssm to handle 'close all windo...
2015-06-15 Jim ProcterMerge branch 'bug/JAL-1775' into develop
2015-06-15 Jim ProcterJAL-1665 patch for regression: failing jalview.ws.jabaw...
2015-06-15 Jim ProcterJAL-1775 patch for regression from Anne Menard’s pseudo...
2015-06-15 Jim ProcterMerge branch 'bug/JAL-1775' into develop
2015-06-15 Jim ProcterJAL-1775 patch regression bug when displayChar is null...
2015-06-15 Jim ProcterMerge branch 'bug/JAL-1775' into develop
2015-06-15 Jim Procterfix for JAL-1775 (and reorganise imports)
2015-06-15 Jim ProcterMerge branch 'bug/JAL-1775' into develop
2015-06-15 Jim ProcterJAL-1775 test demonstrating bug
2015-06-15 Jim ProcterJAL-1775 FileLoader javadoc
2015-06-15 Jim ProcterJAL-1775 fix regression from commit 70f9c4700f20a8fa57e...
2015-06-15 Jim ProcterMerge branch 'develop' into bug/JAL-1775
2015-06-15 gmungocMerge branch 'develop' of https://source.jalview.org...
2015-06-15 gmungocJAL-1778 deregister as a listener when panel closed
2015-06-15 Jim ProcterJAL-1775 fix broken test due to missing file (RF0031_un...
2015-06-15 tcofoegbuJAL-1641 clean up
2015-06-15 tcofoegbuJAL-1641 docs for ComplexAlignFile interface
2015-06-15 tcofoegbuclean up
2015-06-12 tcofoegbumerge
2015-06-12 tcofoegbuJAL-1627 removed extra spaces at end of tooltip
2015-06-12 tcofoegbuJAL-1641 refactor
2015-06-10 tcofoegbuupdated build.xml
2015-06-10 gmungocMerge branch 'develop' of https://source.jalview.org...
2015-06-10 gmungocMerge remote-tracking branch
2015-06-10 tcofoegbumerge
2015-06-10 tcofoegbuJAL-1641 updated applet version
2015-06-10 gmungocMerge branch 'develop' of https://source.jalview.org...
2015-06-10 gmungocJAL-1764 save Chimera/Jmol state as separate entries...
2015-06-10 Jim ProcterJAL-1764 add structure view type attribute to project... schema/JAL-1764_structureViewAttribute
2015-06-09 tcofoegbumerge commit
2015-06-09 tcofoegbuJAL-1488 bug-fix for incorrect start/end position in...
2015-06-08 gmungocJAl-1421 fix method reflection argument (properly this...
2015-06-08 gmungocJAL-1421 undid premature 'improvement' of method parame...
2015-06-07 Jim ProcterJAL-429 remove pointless code from phylip parser features/JAL-653_rebased_gffalignments
2015-06-07 Jim ProcterJAL-653 test for GFF file recognition and alignment...
2015-06-07 Jim ProcterJAL-653 GFF recognition for identifyFile and format...
2015-06-07 Jim ProcterJAL-653 basic GFF3 alignment import wrapper class
2015-06-06 Jim ProcterJAL-653 make sure dummy sequences created during GFF...
2015-06-06 Jim ProcterJAL-653 first stab at parsing GFF3 pragmas to support...
2015-06-06 Jim ProcterJAL-653 gff version number field
2015-06-06 Jim ProcterJAL-653 test and testdata for importing GFF3 file with...
2015-06-06 Jim ProcterJAL-653 missing imports after rebase
2015-06-06 Jim ProcterJAL-653 test for SequenceDummy methods
2015-06-06 Jim ProcterJAL-653 allow a dummy sequence to take on attributes...
2015-06-05 tcofoegbuMerge branch 'bug/JAL-1760_restore-hidden-seqs' into...
2015-06-05 tcofoegbuJAL-1760 JAL-1641 Serialisation of Hidden Seqs and...
2015-06-05 Jim ProcterMerge branch 'develop' into features/JAL-653_gffalignments
2015-06-05 Jim ProcterJAL-653 abstract sequence model to support file backed...
2015-06-05 gmungocJAL-1752 structure highlight scoped to only its mapped...
2015-06-05 gmungocJAL-1588 error dialog if Chimera project opened on...
2015-06-05 gmungocJAL-1622 fix bug computing superposition + associated...
2015-06-05 gmungocJAL-1746 return empty string rather than null in getSta...
2015-06-05 gmungocJAL-1622 Chimera command timeout increased to 5 secs...
2015-06-05 gmungocJAL-1622 duplicate assignment removed (no functional...
2015-06-05 gmungocJAL-1753 JAL-1596 asynchronous command to Chimera ...
2015-06-05 gmungocJAL-1622 code tidy only, no functional change
2015-06-05 gmungocJAL-1749 correcting snafu in last commit
2015-06-05 Jim ProcterJAL-653 refactor sequence interface to separate concret...
2015-06-05 Jim ProcterJAL-845 jim @mungo: should this be in a package local...
2015-06-05 Jim ProcterJAL-1551 formatting
2015-06-05 Jim ProcterJAL-653 set the warningMessage for the file source...
2015-06-05 Jim ProcterJAL-653 GFF attributes parsing mechanism, with first...
2015-06-05 Jim ProcterJAL-653 trim initial tab in sequence feature ATTRIBUTES
2015-06-05 Jim ProcterJAL-653 allow dummy sequences to be created if a sequen...
2015-06-05 Jim ProcterJAL-1551 formatting
2015-06-05 Jim ProcterJAL-653 convenience method to resolve strand attribute...
2015-06-05 Jim ProcterJAL-1115 JAL-653 partial introduction of List interface...
2015-06-05 Jim ProcterJAL-653 JAL-966 TODO and avoid NPE when desktop instanc...
2015-06-05 Jim ProcterJAL-653 codon frames go on the dataset
2015-06-05 Jim ProcterJAL-653 refactored exonerate full output to separate...
2015-06-05 Jim ProcterJAL-653 JAL-845 test to check exonerate cDNA-Protein...
2015-06-05 Jim ProcterJAL-1482 JAL-653 refactor feature file import code...
2015-06-05 Jim ProcterJAL-1482 refactor setTableData to more sensible name...
2015-06-05 Jim ProcterJAL-1551 formatting
2015-06-04 gmungocClear status bar message when initialisation complete
2015-06-04 gmungocJAL-1750 small tidy of AlignSeq.printMapping (+Junit)
2015-06-04 gmungocJAL-1544 spelling in javadoc only
2015-06-04 gmungocJAL-1622 code tidy (+Junit) of collateForPdb()
2015-06-04 gmungocJAL-1747 close all windows on Quit (+small bug fix)
2015-06-04 gmungoctoString method added to aid viewing in the debugger
2015-06-04 gmungocJAL-1270 testToString added
2015-06-04 gmungocJAL-1750 View Mapping scoped to that viewer's mappings...
2015-06-04 gmungocJAL-1743 new Chimera menu option to 'fit to window'
2015-06-04 gmungocJAL-1743 View Chain sub-menu now being populated
2015-06-04 gmungocJAL-1753 statusPanel added (for ProgressBar); 'Fit...
2015-06-04 gmungocJAL-1753 ChimeraViewFrame hosts its own ProgressBar
2015-06-04 gmungocJAL-1742 don't offer to align another chain to the...
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