jalview.git
2023-09-08 Mateusz WarownyJAL-4199 Add tests to the "Functional" group
2023-06-22 Mateusz WarownyJAL-4199 Introduce AlignmentAction tests
2023-06-22 Mateusz WarownyJAL-4199 Initialize jobs and tasks with status CREATED
2023-06-19 Mateusz WarownyJAL-4199 Test basic service parameter construction
2023-06-14 Mateusz WarownyJAL-4199 Test URL settings and basic service discovery
2023-06-14 Mateusz WarownyJAL-4199 Update slivka client
2023-04-24 Mateusz WarownyJAL-4155 Replace unsafe casting to AlignmentPanel with...
2023-04-24 James ProcterJAL-4155 Viewport holds a reference to its AlignmentVie...
2023-03-28 Mateusz WarownyJAL-4154 Remove not-bamboo flag from testGetVisibleWidth
2023-03-28 Mateusz WarownyJAL-4154 Update AlignmentPanelTest to use new forArch...
2023-03-28 Mateusz WarownyJAL-4154 Add Platform.forArch method.
2023-03-28 Mateusz WarownyMerge branch 'JAL-4152-typed-singleton-provider' into...
2023-03-28 Mateusz WarownyMerge branch 'development/Release_2_12_Branch' into...
2023-03-24 Mateusz WarownyJAL-4152 Remove redundant casts from getInstance usages. JAL-4152-typed-singleton-provider
2023-03-22 Mateusz WarownyJAL-4152 Make return type of getInstance a generic...
2023-03-17 Mateusz WarownyJAL-4146 Fix SeqCanvasTest setup
2023-03-15 Mateusz WarownyJAL-4146 Change occurrences of <br/> to <br>
2023-03-14 Mateusz WarownyJAL-4146 Patch parseColourString test to expect null...
2023-03-01 Mateusz WarownyJAL-4136 Replace uses of isBlank with isEmpty
2023-02-24 Mateusz WarownyJAL-4135 replace stream.toString(Charset) calls with...
2023-02-22 Mateusz WarownyJAL-4130 Replace Collection#forEach call with for loop
2023-02-22 Mateusz WarownyJAL-4130 Avoid using thenComparing of the Comparator...
2023-02-17 Mateusz WarownyJAL-4131 Replace usages of requireNonNullElse
2023-02-16 Mateusz WarownyJAL-4130 Workaround the j2s issue with final variables...
2023-02-06 Mateusz WarownyJAL-3878 Change Cache.log calls to Console
2023-02-06 Mateusz WarownyMerge branch 'JAL-3878_ws-overhaul-3' into mmw/Release_...
2023-01-20 Jim ProcterMerge branch 'develop' into development/Release_2_12_Br...
2023-01-20 Jim ProcterMerge branch 'patch/JAL-4114_updated_3dbeacons_api...
2023-01-20 Jim ProcterJAL-4114 model_page_url not required in v2.0 response patch/JAL-4114_updated_3dbeacons_api
2023-01-20 Jim ProcterJAL-4102 update 2.12 from 2.11.2.6 patch release -...
2023-01-20 Jim ProcterJAL-4102 update date and release notes for 2.11.2.6
2023-01-20 Jim ProcterMerge branch 'patch/JAL-4114_updated_3dbeacons_api...
2023-01-20 Jim ProcterMerge branch 'patch/Release_2_11_2_6_Branch' into develop
2023-01-20 Jim ProcterJAL-2353 primary ref candidates that should be promoted... patch/Release_2_11_2_6_Branch
2023-01-20 Jim ProcterJAL-4114 missing mock server response
2023-01-20 Jim ProcterJAL-4114 only rank model qualities that are computed...
2023-01-20 Jim ProcterJAL-4114 alphafold now marked as AB-INITIO so adjust...
2023-01-20 Jim ProcterJAL-4114 additional warnings when PDBe doesn’t return...
2023-01-20 Jim ProcterJAL-4114 patch REST client for changed JSON schema...
2023-01-20 Jim ProcterJAL-4114 formatting
2023-01-20 Jim ProcterJAL-4114 updated mock tests and responses for v2.0 api
2023-01-06 Jim ProcterMerge branch 'improvement/JAL-4111_suffixed_DEVELOP_cha...
2023-01-06 Ben SoaresJAL-4111 Added commit and date text to splashscreens...
2023-01-05 Ben SoaresJAL-4111 improvement to convert -draw argument
2023-01-05 Ben SoaresJAL-4111 Use ImageMagick to add commit and build time...
2023-01-05 Ben SoaresJAL-4111 Fixed channel.props to allow replacement of...
2023-01-05 Benedict Soares... JAL-4111 fixed DMG background image for generic Develop...
2022-12-22 Ben SoaresJAL-4111 Allow -PCHANNEL=DEVELOP-version for new appbas...
2022-12-21 Jim ProcterJAL-3362 update release to 2.12 alpha/JAL-3362_Jalview_212_alpha
2022-12-16 Jim ProcterJAL-4110 added line to build.gradle that allows stdout... update/JAL-4108_212_testng_jar_update
2022-12-16 Jim ProcterJAL-4109 examine -Djalview.loglevel on startup to decid...
2022-12-16 Jim ProcterJAL-4107 JAL-4108 updated testNG and other test depende...
2022-12-16 Jim ProcterJAL-4107 patching tests after merge spike/jims_dec_2022_212_merge
2022-12-16 Jim ProcterJAL-4107 fix merge and avoid NPE
2022-12-16 Jim ProcterJAL-4107 remove old jMol jar
2022-12-14 Jim ProcterJAL-4107 fix test compilation issues
2022-12-14 Jim ProcterMerge branch 'develop' into update_212_Dec_merge_with_2...
2022-12-13 Jim ProcterMerge branch 'alpha/origin_2022_JAL-3066_Jalview_212_sl...
2022-12-12 Mateusz WarownyWIP mmw/JAL-3878_ws-overhaul-3
2022-11-30 Jim ProcterJAL-4102 bump version number
2022-11-30 Jim ProcterJAL-4102 2.11.2.6 hotfix release notes - JAL-4101 JAL...
2022-11-30 Ben SoaresJAL-4101 Updated Rfam* tests
2022-11-30 Ben SoaresJAL-4101 Updated DEFAULT_RFAM_BASEURL
2022-11-30 Jim ProcterJAL-2353 patch for Ensembl refs from uniprot - needs...
2022-11-29 Ben SoaresJAL-4101 Updated Rfam* tests
2022-11-29 Ben SoaresJAL-4101 Updated DEFAULT_RFAM_BASEURL
2022-11-21 Jim ProcterMerge commit 'alpha/update_2_12_for_2_11_2_series_merge...
2022-10-26 Ben SoaresJAL-3416 (and others) increasing number of STDERR lines...
2022-10-25 Ben SoaresJAL-3416 Making FlatLaF default for macs due to a probl...
2022-10-11 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch Release_2_11_2_5
2022-10-11 Jim ProcterJAL-4065 final fix for 2.11.2.5 - 5pm BST release
2022-10-11 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch
2022-10-11 Jim ProcterJAL-4065 revised to avoid a visit from the apostrophe...
2022-10-11 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch
2022-10-11 Jim ProcterJAL-4073 update tests
2022-10-11 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch
2022-10-11 Jim ProcterMerge branch 'develop' of https://source.jalview.org...
2022-10-11 Jim ProcterJAL-4073 fix PEBCAK failure
2022-10-11 Ben SoaresJAL-4014 Changed gecos display names to match labels...
2022-10-11 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch
2022-10-11 Jim ProcterJAL-4065 revised whatsNew to make sense !
2022-10-11 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch
2022-10-11 Jim ProcterJAL-4065 release 2.11.2.5 date is 11th Oct
2022-10-07 Jim ProcterJAL-4065 update citations for Pfam and Rfam and added...
2022-10-07 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch
2022-10-07 Jim ProcterJAL-4065 2.11.2.5 release version bump
2022-10-07 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch
2022-10-07 Jim ProcterJAL-4065 release notes and updated release date for...
2022-10-06 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch
2022-10-06 Jim Procterstable url for PFAM retrieval via interpro api :) JAL...
2022-10-06 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch
2022-10-06 Jim ProcterJAL-1551 formatting
2022-10-06 Jim ProcterJAL-4065 release notes for JAL-4073 JAL-4074
2022-10-06 Jim ProcterJAL-4073 Pfam retrieval now works via a template includ...
2022-10-06 Jim ProcterPatch for JAL-4074 - any content ending in ‘gzip’ recog...
2022-09-15 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch
2022-09-15 Jim ProcterJAL-4065 release notes for JAL-4014 and JAL-4063 in...
2022-09-15 Jim ProcterMerge branch 'develop' into releases/Release_2_11_2_Branch
2022-09-15 Jim ProcterJAL-4065 - new release notes featuring JAL-3612 fix
2022-09-14 Jim ProcterMerge branch 'bug/JAL-3612_overviewFeatureOrdering...
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