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jalview.git
2018-01-16 kiramtJAL-2759 setup hideBitSet over range for hideInsertions commit | commitdiff | tree | snapshot
2018-01-16 gmungocJAL-2885 uniprot now https, uniprot/ensembl/pfam/xfam... commit | commitdiff | tree | snapshot
2018-01-16 gmungocJAL-1270 JAL-2885 clear properties before load commit | commitdiff | tree | snapshot
2018-01-16 kiramtJAL-2759 Unit test for PopupMenu hideInsertions code commit | commitdiff | tree | snapshot
2018-01-16 kiramtJAL-2759 Moved alignment annotation code out of HiddenC... commit | commitdiff | tree | snapshot
2018-01-16 kiramtJAL-2759 Replaced StringBuffer with StringBuilder;... commit | commitdiff | tree | snapshot
2018-01-15 kiramtJAL-2759 More compact iterator usage; after review commit | commitdiff | tree | snapshot
2018-01-15 kiramtJAL-2759 First pass instantiate hiddenColumns collectio... commit | commitdiff | tree | snapshot
2018-01-15 kiramtJAL-2759 getVisContigsIterator returns VisibleContigsIt... commit | commitdiff | tree | snapshot
2018-01-15 kiramtJAL-2759 Rename hideInsertionsFor to hideList, after... commit | commitdiff | tree | snapshot
2018-01-15 kiramtJAL-2759 Refactor of hideInsertionsFor after review commit | commitdiff | tree | snapshot
2018-01-15 kiramtJAL-2759 Simplified HiddenColumns constructor after... commit | commitdiff | tree | snapshot
2018-01-15 kiramtJAL-2759 Changed VisibleColsCollection constructor... commit | commitdiff | tree | snapshot
2018-01-15 kiramtJAL-2759 Minor doc and naming changes commit | commitdiff | tree | snapshot
2018-01-15 kiramtJAL-2759 Updated absoluteToVisibleColumn doc (prev... commit | commitdiff | tree | snapshot
2018-01-15 kiramtJAL-2759 Rename findColumnPosition and adjustForHiddenC... commit | commitdiff | tree | snapshot
2018-01-15 kiramtJAL-2759 Renamed BoundedHiddenColsIterator to HiddenCol... commit | commitdiff | tree | snapshot
2018-01-15 kiramtJAL-2759 Comments and renaming for has(Many)HiddenColum... commit | commitdiff | tree | snapshot
2018-01-15 kiramtJAL-2759 Tidy up javadoc and naming in HiddenColumnsCur... commit | commitdiff | tree | snapshot
2018-01-15 kiramtJAL-2759 Updated HiddenColumnsTest::testIsVisible follo... commit | commitdiff | tree | snapshot
2018-01-15 kiramtJAL-2759 Update to getHiddenBoundaryRight + unit test... commit | commitdiff | tree | snapshot
2018-01-15 kiramtJAL-2759 Updates following review commit | commitdiff | tree | snapshot
2018-01-12 kiramtJAL-2886 trivial unit test fix commit | commitdiff | tree | snapshot
2018-01-11 kiramtMerge remote-tracking branch 'origin/task/JAL-2662... commit | commitdiff | tree | snapshot
2018-01-11 kiramtJAL-2662 Updated README task/JAL-2662 commit | commitdiff | tree | snapshot
2017-12-19 Jim ProcterJAL-2880 disabled non-functional test - Jmol parser... commit | commitdiff | tree | snapshot
2017-12-01 Jim ProcterMerge branch 'develop' into bugs/JAL-2780_JAL-2781_pdbn... commit | commitdiff | tree | snapshot
2017-11-30 Jim ProcterJAL-2858 tweak OSX specific jar resources in JNLP commit | commitdiff | tree | snapshot
2017-11-30 Jim ProcterMerge branch 'develop' into releases/Release_2_10_3_Branch commit | commitdiff | tree | snapshot
2017-11-30 Jim ProcterJAL-2849 release notes commit | commitdiff | tree | snapshot
2017-11-30 Jim ProcterMerge branch 'bug/JAL-2849' into develop commit | commitdiff | tree | snapshot
2017-11-30 Jim ProcterJAL-2849 JAL-2863 file format preferences TODO
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2017-11-30 Jim ProcterJAL-2849 fix commit | commitdiff | tree | snapshot
2017-11-28 Jim ProcterMerge branch 'bug/JAL-2859_uniprottowrongpdbid' into... commit | commitdiff | tree | snapshot
2017-11-28 Jim ProcterJAL-2740 release notes commit | commitdiff | tree | snapshot
2017-11-28 Jim ProcterMerge branch 'bug/JAL-2740' into develop commit | commitdiff | tree | snapshot
2017-11-28 Jim ProcterJAL-2827 release notes commit | commitdiff | tree | snapshot
2017-11-28 Jim ProcterMerge branch 'bug/JAL-2827' into develop commit | commitdiff | tree | snapshot
2017-11-28 Jim ProcterJAL-2842 release notes commit | commitdiff | tree | snapshot
2017-11-28 Jim ProcterMerge branch 'bug/JAL-2842' into develop commit | commitdiff | tree | snapshot
2017-11-27 Jim ProcterJAL-2859 disambiguate with PDB ID if no file path bug/JAL-2859_uniprottowrongpdbid commit | commitdiff | tree | snapshot
2017-11-27 Jim ProcterJAL-2859 failing test demonstrating sequences with... commit | commitdiff | tree | snapshot
2017-11-27 Jim ProcterMerge branch 'develop' into releases/Release_2_10_3_Branch commit | commitdiff | tree | snapshot
2017-11-27 Jim ProcterJAL-2851 JAL-2858 release notes for 2.10.3b1 commit | commitdiff | tree | snapshot
2017-11-27 Jim ProcterMerge branch 'develop' into releases/Release_2_10_3_Branch commit | commitdiff | tree | snapshot
2017-11-27 Jim ProcterMerge branch 'bug/JAL-2851' into develop commit | commitdiff | tree | snapshot
2017-11-24 kiramtJAL-2759 update benchmark code commit | commitdiff | tree | snapshot
2017-11-23 kiramtMerge branch 'develop' into bug/JAL-2851 bug/JAL-2851 commit | commitdiff | tree | snapshot
2017-11-23 kiramtJAL-2851 Fix merge error breaking vertical scrolling commit | commitdiff | tree | snapshot
2017-11-22 kiramtJAL-2842 JAL-2759 change to SeqPanel moveCursor commit | commitdiff | tree | snapshot
2017-11-22 kiramtJAL-2759 code tidy commit | commitdiff | tree | snapshot
2017-11-22 kiramtJAL-2759 performance improvements to hideColumns commit | commitdiff | tree | snapshot
2017-11-22 kiramtJAL-2759 performance tweaks commit | commitdiff | tree | snapshot
2017-11-22 kiramtJAL-2759 HiddenColumns test polishing commit | commitdiff | tree | snapshot
2017-11-21 kiramtJAL-2759 corrected old getVisibleBlocksIterator calls... commit | commitdiff | tree | snapshot
2017-11-21 kiramtJAL-2759 Remove getVisibleBlocksIterator call commit | commitdiff | tree | snapshot
2017-11-21 kiramtMerge branch 'develop' into feature/JAL-2759 commit | commitdiff | tree | snapshot
2017-11-21 kiramtJAL-2759 BoundedStartRegionIterator test commit | commitdiff | tree | snapshot
2017-11-21 kiramtJAL-2759 unit tests for VisibleContigsIterator commit | commitdiff | tree | snapshot
2017-11-20 Jim ProcterJAL-2698 only allow InstallAnywhere launches with versi... commit | commitdiff | tree | snapshot
2017-11-20 Jim ProcterJAL-2698 patch path for InstallAnywhere build. Webstart... commit | commitdiff | tree | snapshot
2017-11-20 kiramtJAL-2759 cursor option for BoundedStartRegionIterator commit | commitdiff | tree | snapshot
2017-11-20 kiramtJAL-2759 reinstate change from develop (JAL-2636) someh... commit | commitdiff | tree | snapshot
2017-11-20 kiramtJAL-2759 rationalise visible contigs iteration commit | commitdiff | tree | snapshot
2017-11-20 kiramtJAL-2759 improvements to speed up synchronisation;... commit | commitdiff | tree | snapshot
2017-11-17 Jim ProcterJAL-2698 tidy release notes and whats new commit | commitdiff | tree | snapshot
2017-11-17 Jim ProcterJAL-2698 source code licencing commit | commitdiff | tree | snapshot
2017-11-17 Jim ProcterJAL-2698 tidy up release notes commit | commitdiff | tree | snapshot
2017-11-17 Jim ProcterJAL-2698 Cached PDB Entries -> Cached Structures in... commit | commitdiff | tree | snapshot
2017-11-17 Jim ProcterJAL-2466 revised help text for sort by PID commit | commitdiff | tree | snapshot
2017-11-17 Jim ProcterJAL-2698 what’s new and release notes commit | commitdiff | tree | snapshot
2017-11-17 Jim ProcterJAL-2822 known defect for 2.10.3 commit | commitdiff | tree | snapshot
2017-11-17 Jim ProcterMerge branch 'bug/JAL-2784' into develop commit | commitdiff | tree | snapshot
2017-11-17 Jim ProcterJAL-2841 JAL-2791 new known defect

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2017-11-17 Jim ProcterJAL-2541 known defect commit | commitdiff | tree | snapshot
2017-11-17 Jim ProcterJAL-2684 clarify release notes commit | commitdiff | tree | snapshot
2017-11-17 Jim ProcterMerge branch 'bug/JAL-2821' into develop commit | commitdiff | tree | snapshot
2017-11-17 Jim ProcterJAL-2840 release notes commit | commitdiff | tree | snapshot
2017-11-17 Jim ProcterMerge branch 'bug/JAL-2837' into develop commit | commitdiff | tree | snapshot
2017-11-17 kiramtMerge branch 'develop' into bug/JAL-2837 bug/JAL-2837 commit | commitdiff | tree | snapshot
2017-11-17 Jim ProcterMerge branch 'doc/JAL-2494_JAL-2828_mergefindAnnotation... commit | commitdiff | tree | snapshot
2017-11-17 kiramtMerge branch 'develop' into bug/JAL-2837 commit | commitdiff | tree | snapshot
2017-11-17 Jim ProcterJAL-2811 release note commit | commitdiff | tree | snapshot
2017-11-17 Jim ProcterJAL-2541 not in 2.10.3, JAL-2831 signed off. commit | commitdiff | tree | snapshot
2017-11-17 Jim ProcterJAL-2698 11th hour release today commit | commitdiff | tree | snapshot
2017-11-17 Jim ProcterMerge branch 'bug/JAL-2831' into develop commit | commitdiff | tree | snapshot
2017-11-17 kiramtJAL-2759 Move isVisible to use cursor commit | commitdiff | tree | snapshot
2017-11-17 kiramtJAL-2759 tidy commit | commitdiff | tree | snapshot
2017-11-17 kiramtJAL-2759 Update tests commit | commitdiff | tree | snapshot
2017-11-17 kiramtJAL-2759 Convert reveal to use cursor commit | commitdiff | tree | snapshot
2017-11-17 kiramtJAL-2759 HiddenColumnsCursor tests commit | commitdiff | tree | snapshot
2017-11-16 Jim ProcterJAL-2541 JAL-2829 JAL-2830 JAL-2822 catch all release... commit | commitdiff | tree | snapshot
2017-11-16 Jim ProcterMerge branch 'bug/JAL-2829deleteCharsWithGaps' into... commit | commitdiff | tree | snapshot
2017-11-16 kiramtJAL-2831 Removed unwanted hidden sequences checks bug/JAL-2831 commit | commitdiff | tree | snapshot
2017-11-16 kiramtJAL-2842 remove infinite loop in cursor move bug/JAL-2842 commit | commitdiff | tree | snapshot
2017-11-15 kiramtJAL-2831 Don't show cursor if position in hidden region commit | commitdiff | tree | snapshot
2017-11-15 kiramtMerge branch 'bug/JAL-2811' into bug/JAL-2831 commit | commitdiff | tree | snapshot
2017-11-15 kiramtJAL-2811 Updated following review bug/JAL-2811 commit | commitdiff | tree | snapshot
2017-11-15 kiramtJAL-2840 fix wrapped scrolling when using cursor at... commit | commitdiff | tree | snapshot
2017-11-15 kiramtJAL-2834 JAL-2836 temporarily disabled wrapped mode... commit | commitdiff | tree | snapshot
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