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jalview.git
2007-02-12
amwaterhouse
version 3.7
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2007-02-12
amwaterhouse
date added
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2007-02-12
amwaterhouse
>0 rather than -1 check
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2007-02-12
jprocter
tranfer pdbresno features to dataset sequence.
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2007-02-12
amwaterhouse
Reload jar files
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2007-02-12
amwaterhouse
Hashtable for previously loaded pdb files
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2007-02-12
amwaterhouse
Make checkbox bigger for text on mac
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2007-02-09
jprocter
running jalview from the command line.
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2007-02-09
jprocter
added command line help documentation and preferences...
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2007-02-09
jprocter
added 'show overview' preference.
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2007-02-08
jprocter
fix on newquestionaire notification bug (again)
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2007-02-07
amwaterhouse
formatted
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2007-02-07
amwaterhouse
restore unformatted state
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2007-02-07
amwaterhouse
Formatting
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2007-02-07
amwaterhouse
formatting
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2007-02-07
amwaterhouse
Extend annotation if too short
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2007-02-07
amwaterhouse
reload, just close this frame and open a new one
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2007-02-07
amwaterhouse
2.2.1 changes
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2007-02-07
amwaterhouse
removed
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2007-02-06
jprocter
hardwired default user questionnaire url and by default...
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2007-02-06
jprocter
more bugfixes.
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2007-02-06
amwaterhouse
2.2.1 updates
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2007-02-06
amwaterhouse
Dont add null description to tooltip
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2007-02-06
amwaterhouse
Applet params cant read tab character
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2007-02-06
amwaterhouse
Allow for frame insets
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2007-02-06
amwaterhouse
Format label
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2007-02-06
jprocter
debug log message
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2007-02-05
jprocter
simplified and refactored along with cgi-script.
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2007-02-05
amwaterhouse
Alignment editing columns 0 and 1 fixed
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2007-02-05
jprocter
command line hook for questionnaire url argument.
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2007-02-05
jprocter
kkv change
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2007-02-05
jprocter
client side machinery for user questionnaire responses
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2007-02-05
amwaterhouse
Fixed bug in trim right annotation adjust
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2007-02-05
amwaterhouse
stop flickering annotationPanel
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2007-02-05
amwaterhouse
Fixed bug in trim right annotation adjust
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2007-02-05
amwaterhouse
image is panel size
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2007-02-05
amwaterhouse
applet can define groups as parameters
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2007-02-02
amwaterhouse
Dont add group if seqs not found
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2007-02-02
amwaterhouse
getWidth -1 for trim right
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2007-02-02
amwaterhouse
check annotation size when cutting
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2007-02-02
amwaterhouse
annotation might have been deleted
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2007-02-02
amwaterhouse
catch control down before editing null pointer
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2007-02-02
amwaterhouse
22 = scrollbar and insets widthcvs diff gui/AlignmentPa...
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2007-02-02
amwaterhouse
Must allow for scollbar and frame insets when getting...
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2007-02-02
amwaterhouse
LookandFeel must be set in headless state as window...
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2007-02-01
amwaterhouse
removed deprecated bits
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2007-02-01
amwaterhouse
find colours uncommented
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2007-02-01
amwaterhouse
sequence.getStart() in findTrueIndex
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2007-02-01
amwaterhouse
get fontmetrics from pg
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2007-02-01
amwaterhouse
Dont add null tooltip
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2007-02-01
amwaterhouse
New description
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2007-02-01
amwaterhouse
tooltips
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2007-02-01
amwaterhouse
set description for groups
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2007-02-01
amwaterhouse
Doesnt move with mouse, friendlier for mac users
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2007-02-01
amwaterhouse
Dont repaint tooltip
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2007-02-01
amwaterhouse
One class for edit name/description
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2007-01-31
amwaterhouse
slightly larger window edit name/desc
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2007-01-31
amwaterhouse
edit annotation name/description
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2007-01-31
amwaterhouse
Can edit annotation name/description
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2007-01-31
amwaterhouse
Consensus, conservation, quality labels may have changed
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2007-01-31
amwaterhouse
aligned not used
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2007-01-31
amwaterhouse
Dont export annotations if not visible
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2007-01-31
amwaterhouse
Unique name for new group and treegroup
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2007-01-31
amwaterhouse
Adjust features when cutting and pasting
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2007-01-31
amwaterhouse
make new dataset seq if residues deleted
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2007-01-31
amwaterhouse
copy feature: check for null values
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2007-01-31
amwaterhouse
aligned not used
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2007-01-30
amwaterhouse
Check valid residues in ss
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2007-01-30
amwaterhouse
Check seqs in group exist in this alignment
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2007-01-30
amwaterhouse
Any character non aa or nucleotide is a space
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2007-01-30
amwaterhouse
moved painting routine
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2007-01-30
amwaterhouse
consensusColouring never used
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2007-01-30
amwaterhouse
Draw helices correctly
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2007-01-30
amwaterhouse
Use util toHexString
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2007-01-30
amwaterhouse
Output groups in annotation file
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2007-01-29
amwaterhouse
Dont clear graphics g before drawing the image
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2007-01-29
amwaterhouse
Image for labels, stops flickering
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2007-01-29
amwaterhouse
New view copies annotations across
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2007-01-29
amwaterhouse
Tooltips for group names, descriptions
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2007-01-29
amwaterhouse
Description added
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2007-01-29
amwaterhouse
SequenceGroup parsing added to annotation file
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2007-01-29
amwaterhouse
ID_ITALICS option in preferences
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2007-01-29
amwaterhouse
scaleAbove, left and right set when tab selection changes
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2007-01-29
amwaterhouse
Marios annotation bug fixed
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2007-01-26
amwaterhouse
AnnotationId is hashcode of object
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2007-01-26
amwaterhouse
Only set the sequence oncecvs diff datamodel/Alignment...
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2007-01-26
amwaterhouse
Adjusts annotations for sequence edits
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2007-01-26
amwaterhouse
If its null, set tip empty
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2007-01-26
jprocter
preliminary documentation for DNA->protein codon featur...
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2007-01-26
jprocter
added doc for PDBResNum features
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2007-01-25
amwaterhouse
Command takes alignment, not gapChar
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2007-01-25
amwaterhouse
Annotations move when full alignment edited
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2007-01-25
amwaterhouse
Annotation adjustment moved to EditCommand
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2007-01-25
amwaterhouse
Remove unneccessary lines
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2007-01-25
amwaterhouse
AlignmentAnnotations require id
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2007-01-25
amwaterhouse
Allow for hidden columns
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2007-01-25
amwaterhouse
Only output visible annotations
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2007-01-25
amwaterhouse
load/get Annotation
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2007-01-25
amwaterhouse
Remove unnecessary line
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2007-01-25
amwaterhouse
Output annotations
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