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jalview.git
2024-01-11
James Procter
JAL-4366 remove some tortuous repetition in computeMapp...
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2024-01-11
James Procter
JAL-4366 incomplete test verifying a 3di alignment...
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2024-01-11
James Procter
JAL-4366 new mapping type for 3di/protein sequence...
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2024-01-11
James Procter
JAL-4366 allow a 3di alignment to be loaded and shown...
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2023-12-17
James Procter
JAL-4366 account for 3dmat matrix in tests
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2023-12-16
James Procter
JAL-4366 1:1 mapping requires exact sequence length...
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2023-12-16
James Procter
JAL-789 pairwise alignment via calculations dialog...
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2023-12-16
James Procter
JAL-4366 mat3di score model
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2023-12-15
James Procter
JAL-4366 hacked in a 1:1 mapping
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2023-12-15
James Procter
JAL-1551 formatting
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2023-12-15
James Procter
JAL-4366 build a mapping to a PDBChain with an arbitrar...
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2023-12-15
James Procter
JAL-4366 compute coverage on each side of the pairwise...
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2023-12-14
James Procter
JAL-4356 update release notes
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2023-12-14
James Procter
Merge branch 'bug/JAL-4353_cannot_output_multiple_diffe...
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2023-12-14
James Procter
Merge branch 'bug/JAL-4353_cannot_output_multiple_diffe...
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2023-12-14
James Procter
JAL-4353 wait for files to be written fully before...
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2023-12-14
James Procter
JAL-4217 singleThread all tests
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2023-12-14
James Procter
Merge branch 'bug/JAL-2934proportionalScrolling' into...
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2023-12-14
James Procter
Merge branch 'develop' into bug/JAL-2934proportionalScr...
bug/JAL-2934proportionalScrolling
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2023-12-12
Ben Soares
JAL-4353 bigger tighter test
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2023-12-12
James Procter
JAL-4217 don’t try and export an image when Jmol is...
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2023-12-12
Ben Soares
Merge branch 'bug/JAL-4353_cannot_output_multiple_diffe...
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2023-12-12
James Procter
Merge branch 'develop' into bug/JAL-4353_cannot_output_...
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2023-12-12
James Procter
JAL-4217 close internal frame on the swing thread to...
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2023-12-12
Ben Soares
JAL-4353 helper method and test for primary/secondary...
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2023-12-12
James Procter
Merge branch 'bug/JAL-4353_cannot_output_multiple_diffe...
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2023-12-12
James Procter
JAL-4353 failing test
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2023-12-12
James Procter
JAL-4353 fix assert that successive test output files...
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2023-12-11
James Procter
JAL-4192 more specific info about versions needed
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2023-12-06
Ben Soares
JAL-4353 re-used random color code
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2023-12-06
Ben Soares
JAL-4353 Preserve the user given 'linkedId' with ArgVal...
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2023-12-06
James Procter
JAL-4356 bump RELEASE
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2023-12-06
James Procter
JAL-4356 new release notes and whats new for 2.11.3...
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2023-12-06
James Procter
Merge branch 'patch/JAL-840_clustalx_docs_fix' into...
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2023-12-06
James Procter
Merge branch 'bug/JAL-2934proportionalScrolling' into...
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2023-12-06
Ben Soares
JAL-4353 Add a 'random' colour to produce a random...
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2023-12-05
Ben Soares
JAL-4353 Add secondary Types for Args, for STRUCTUREIMA...
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2023-12-01
Ben Soares
JAL-4243 Updated bio.tools record and JSON (version...
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2023-11-30
James Procter
JAL-4351 update release notes for JAL-4342
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2023-11-30
James Procter
Merge branch 'patch/JAL-4342_emptyannotationsexport...
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2023-11-30
James Procter
JAL-4342 test and patch checking annotation csv export...
patch/JAL-4342_emptyannotationsexport
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2023-11-30
James Procter
Patch fixes JAL-4165 - added to release notes JAL-4351
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2023-11-30
James Procter
JAL-4351 2.11.3.2 scheduled for 1st December release
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2023-11-30
James Procter
Merge branch 'bug/JAL-4344_structureimage_cl_arg_only_c...
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2023-11-30
Ben Soares
JAL-4344 careful application of -Djava.awt.headless...
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2023-11-22
James Procter
JAL-4343 fix insufficient-caffeine error - add whats...
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2023-11-22
James Procter
JAL-4343 release today, update notes for JAL-4348 and...
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2023-11-22
James Procter
Merge branch 'patch/JAL-4345_pae_epas1_doubleclick...
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2023-11-21
James Procter
JAL-4345 patch and release notes
patch/JAL-4345_pae_epas1_doubleclick
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2023-11-20
Ben Soares
JAL-4348 Add newer versions of Chimera and ChimeraX...
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2023-11-20
James Procter
JAL-4343 patch for JAL-4347 uniprot non-pos feature...
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2023-11-17
James Procter
JAL-4343 release notes for JAL-4340 and JAL-4243
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2023-11-17
James Procter
JAL-4343 bump version
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2023-11-16
Ben Soares
JAL-4243 Updated bio.tools record for 2.11.3.0
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2023-11-16
Ben Soares
JAL-4340 Change launch scripts to be xresources to...
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2023-11-15
James Procter
JAL-4090 JAL-4334 patch in release notes
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2023-11-15
James Procter
Merge branch 'bug/JAL-4334_unknownstartenduniprotfeatur...
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2023-11-15
James Procter
Merge branch 'patch/JAL-4222_100s_timeout_on_imagexport...
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2023-11-15
James Procter
JAL-4273 actually pass startSeq etc on to rendering...
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2023-11-15
James Procter
JAL-4090 fix up release notes new known issues
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2023-11-15
James Procter
JAL-4222 bail if we wait too long for Jmol to save...
patch/JAL-4222_100s_timeout_on_imagexport
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2023-11-15
James Procter
JAL-4090 blocker patch JAL-3772 tidy up groovy console...
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2023-11-15
James Procter
JAL-4090 JAL-4334 position status when start, end or...
bug/JAL-4334_unknownstartenduniprotfeatures
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2023-11-15
James Procter
JAL-4090 JAL-4338 known defect
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2023-11-15
James Procter
JAL-4090 release 15th November 2023
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2023-11-15
James Procter
JAL-4090 JAL-3858 fix up PAE docs - drop the EBI image...
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2023-11-13
James Procter
JAL-4090 JAL-1551 source license
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2023-11-13
James Procter
JAL-4090 relese date 14th Nov 2023
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2023-11-13
James Procter
JAL-4236 don’t look for headers in JalviewJS
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2023-11-13
James Procter
JAL-4336 set preferred dimensions for JTextBox workarou...
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2023-11-13
James Procter
JAL-4090 fix JAL-4236 - just put the name of the class...
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2023-11-13
James Procter
JAL-4331 construct and pass on overview title before...
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2023-11-13
James Procter
JAL-4334 failing test using whole of Q29079 accession...
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2023-11-09
Ben Soares
JAL-4090 minor missing word correction to whatsnew
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2023-11-03
James Procter
JAL-4090 JAL-1551 spotlessApply
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2023-11-03
James Procter
JAL-4090 tweak what’s new
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2023-11-02
James Procter
JAL-4090 reported new known issue JAL-4328
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2023-11-02
James Procter
JAL-4192 minimal specification of gradle version in...
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2023-11-02
James Procter
JAL-4090 fix up release notes - add notes or JAL-4216...
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2023-11-02
James Procter
JAL-4169 fix up urls to faq and documentation
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2023-11-02
James Procter
JAL-4090 known issue report for JAL-4517
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2023-11-02
James Procter
JAL-4090 release notes for JAL-1713 JAL-2528 and known...
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2023-11-02
James Procter
JAL-4090 JAL-3921 release notes
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2023-11-02
James Procter
Merge branch 'patch/JAL-3921_jmol_session_save' into...
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2023-11-02
James Procter
Merge branch 'develop' into patch/JAL-3921_jmol_session...
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2023-11-02
James Procter
JAL-4217 wrap progress bar creation in an invokeLater...
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2023-11-02
James Procter
JAL-3088 release notes JAL-4090
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2023-11-02
James Procter
JAL-1551 formatting
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2023-11-02
James Procter
Merge branch 'patch/JAL-3088_finalbracenotinrightplace...
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2023-11-02
James Procter
Merge branch 'develop' into patch/JAL-3088_finalbraceno...
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2023-11-02
James Procter
JAL-4090 update release date to friday 3rd November
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2023-11-02
James Procter
JAL-4090 JAL-4293 JAL-4325 release notes
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2023-11-02
James Procter
JAL-4090 JAL-4218 patch and release notes - don’t inclu...
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2023-11-02
James Procter
JAL-4090 marked JAL-4290 as a knowndefect
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2023-11-02
James Procter
JAL-4090 JAL-4110 JAL-3599 release notes
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2023-11-02
James Procter
JAL-4090 JAL-4310 JAL-4298 JAL-4282 JAL-4223 release...
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2023-11-02
James Procter
JAL-4090 JAL-4147 documentation for revised sequence...
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2023-11-02
James Procter
JAL-4090 release notes for JAL-4304,JAL-4305 and JAL...
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2023-11-02
James Procter
JAL-4289 JAL-4253 lower end of group boundary vertical...
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2023-11-01
James Procter
JAL-4090 JAL-4281 JAL-4311 release notes
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